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Technische Universität München
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Searching protein 3-D structures in linear time
Tetsuo Shibuya
LNCS/LNBI
5541
, 2009, pp. 1-15
Optimization-based peptide mass fingerprinting for protein mixture identification
Zengyou He
,
Chao Yang
,
Can Yang
,
Robert Z. Qi
,
Jason Po-Ming Tam
,
Weichuan Yu
LNCS/LNBI
5541
, 2009, pp. 16-30
Boosting protein threading accuracy
Jian Peng
,
Jinbo Xu
LNCS/LNBI
5541
, 2009, pp. 31-45
New perspectives on gene family evolution: Losses in reconciliation and a link with supertrees
Cedric Chauve
,
Nadia El-Mabrouk
LNCS/LNBI
5541
, 2009, pp. 46-58
A probabilistic graphical model for ab initio folding
Feng Zhao
,
Jian Peng
,
Joe DeBartolo
,
Karl F. Freed
,
Tobin R. Sosnick
,
Jinbo Xu
LNCS/LNBI
5541
, 2009, pp. 59-73
Topology-free querying of protein interaction networks
Sharon Bruckner
,
Falk Hüffner
,
Richard M. Karp
,
Ron Shamir
,
Roded Sharan
LNCS/LNBI
5541
, 2009, pp. 74-89
Cross species expression analysis of innate immune response
Yong Lu
,
Roni Rosenfeld
,
Gerard J. Nau
,
Ziv Bar-Joseph
LNCS/LNBI
5541
, 2009, pp. 90-107
Haplotype inference in complex pedigrees
Bonnie Kirkpatrick
,
Javier Rosa
,
Eran Halperin
,
Richard M. Karp
LNCS/LNBI
5541
, 2009, pp. 108-120
Storage and retrieval of individual genomes
Veli Mäkinen
,
Gonzalo Navarro
,
Jouni Sirén
,
Niko Välimäki
LNCS/LNBI
5541
, 2009, pp. 121-137
An online approach for mining collective behaviors from molecular dynamics simulations
Arvind Ramanathan
,
Pratul K. Agarwal
,
Maria Kurnikova
,
Christopher J. Langmead
LNCS/LNBI
5541
, 2009, pp. 138-154
Parameter synthesis in nonlinear dynamical systems: Application to systems biology
Alexandre Donzé
,
Gilles Clermont
,
Axel Legay
,
Christopher J. Langmead
LNCS/LNBI
5541
, 2009, pp. 155-169
Spatial clustering of multivariate genomic and epigenomic information
Rami Jaschek
,
Amos Tanay
LNCS/LNBI
5541
, 2009, pp. 170-183
How many bootstrap replicates are necessary?
Nicholas D. Pattengale
,
Masoud Alipour
,
Olaf R.P. Bininda-Emonds
,
Bernard M.E. Moret
,
Alexandros Stamatakis
LNCS/LNBI
5541
, 2009, pp. 184-200
A robust Bayesian two-sample test for detecting intervals of differential gene expression in microarray time series
Oliver Stegle
,
Katherine Denby
,
David L. Wild
,
Zoubin Ghahramani
,
Karsten M. Borgwardt
LNCS/LNBI
5541
, 2009, pp. 201-216
Incorporating nucleosomes into thermodynamic models of transcription regulation
Tali Raveh-Sadka
,
Michal Levo
,
Eran Segal
LNCS/LNBI
5541
, 2009, pp. 217-217
Combinatorial algorithms for structural variation detection in high throughput sequenced genomes
Fereydoun Hormozdiari
,
Can Alkan
,
Evan E. Eichler
,
S. Cenk Sahinalp
LNCS/LNBI
5541
, 2009, pp. 218-219
Optimizing PCR assays for DNA based cancer diagnostics
Ali Bashir
,
Qing Lu
,
Dennis Carson
,
Benjamin Raphael
,
Yu-Tsueng Liu
,
Vineet Bafna
LNCS/LNBI
5541
, 2009, pp. 220-235
The Multi-State Perfect Phylogeny Problem with missing and removable data: Solutions via integer-programming and chordal graph theory
Dan Gusfield
LNCS/LNBI
5541
, 2009, pp. 236-252
COE: A general approach for efficient genome-wide two-locus epistasis test in disease association study
Xiang Zhang
,
Feng Pan
,
Yuying Xie
,
Fei Zou
,
Wei Wang
LNCS/LNBI
5541
, 2009, pp. 253-269
Overlapping pools for high throughput targeted resequencing
Snehit Prabhu
,
Itsik Pe'er
LNCS/LNBI
5541
, 2009, pp. 270-270
Deep sequencing of a genetically heterogeneous sample: Local haplotype reconstruction and read error correction
Osvaldo Zagordi
,
Lukas Geyrhofer
,
Volker Roth
,
Niko Beerenwinkel
LNCS/LNBI
5541
, 2009, pp. 271-284
Lifting prediction to alignment of RNA pseudoknots
Mathias Möhl
,
Sebastian Will
,
Rolf Backofen
LNCS/LNBI
5541
, 2009, pp. 285-301
Detection of locally over-represented GO terms in protein-protein interaction networks
Mathieu Lavallée-Adam
,
Benoit Coulombe
,
Mathieu Blanchette
LNCS/LNBI
5541
, 2009, pp. 302-320
Protein fragment swapping: A method for asymmetric, selective site-directed recombination
Wei Zheng
,
Karl E. Griswold
,
Chris Bailey-Kellogg
LNCS/LNBI
5541
, 2009, pp. 321-338
Simultaneous alignment and folding of protein sequences
Jérôme Waldispühl
,
Charles W. O'Donnell
,
Sebastian Will
,
Srinivas Devadas
,
Rolf Backofen
,
Bonnie Berger
LNCS/LNBI
5541
, 2009, pp. 339-355
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