Fakultät für Informatik
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Technische Universität München
Lehrstuhl für Effiziente Algorithmen
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Algorithms for exploring the space of gene tree/species tree reconciliations
Jean-Philippe Doyon
,
Cedric Chauve
,
Sylvie Hamel
LNCS/LNBI
5267
, 2008, pp. 1-13
Limitations of pseudogenes in identifying gene losses
James C. Costello
,
Mira V. Han
,
Matthew W. Hahn
LNCS/LNBI
5267
, 2008, pp. 14-25
Duplication mechanism and disruptions in flanking regions influence the fate of mammalian gene duplicates
Paul Ryvkin
,
Jin Jun
,
Edward Hemphill
,
Craig Nelson
LNCS/LNBI
5267
, 2008, pp. 26-39
Estimating the relative contributions of new genes from retrotransposition and segmental duplication events during mammalian evolution
Jin Jun
,
Paul Ryvkin
,
Edward Hemphill
,
Ion Mȃndoiu
,
Craig Nelson
LNCS/LNBI
5267
, 2008, pp. 40-54
Discovering local patterns of co-evolution
Yifat Felder
,
Tamir Tuller
LNCS/LNBI
5267
, 2008, pp. 55-71
Ancestral reconstruction by asymmetric Wagner parsimony over continuous characters and squared parsimony over distributions
Miklós Csŭrös
LNCS/LNBI
5267
, 2008, pp. 72-86
An alignment-free distance measure for closely related genomes
Bernhard Haubold
,
Mirjana Domazet-Los̑o
,
Thomas Wiehe
LNCS/LNBI
5267
, 2008, pp. 87-99
Gene team tree: A compact representation of all gene teams
Melvin Zhang
,
Hon Wai Leong
LNCS/LNBI
5267
, 2008, pp. 100-112
Integrating sequence and topology for efficient and accurate detection of horizontal gene transfer
Cuong Than
,
Guohua Jin
,
Luay Nakhleh
LNCS/LNBI
5267
, 2008, pp. 113-127
An evolutionary study of the human papillomavirus genomes
Dunarel Badescu
,
Abdoulaye Baniré Diallo
,
Mathieu Blanchette
,
Vladimir Makarenkov
LNCS/LNBI
5267
, 2008, pp. 128-142
An algorithm for inferring mitogenome rearrangements in a phylogenetic tree
Matthias Bernt
,
Daniel Merkle
,
Martin Middendorf
LNCS/LNBI
5267
, 2008, pp. 143-157
Perfect DCJ rearrangement
S`everine Bérard
,
Annie Chateau
,
Cedric Chauve
,
Christophe Paul
,
Eric Tannier
LNCS/LNBI
5267
, 2008, pp. 158-169
Sorting genomes with insertions, deletions and duplications by DCJ
Sophia Yancopoulos
,
Richard Friedberg
LNCS/LNBI
5267
, 2008, pp. 170-183
A fast and exact algorithm for the median of three problem - A graph decomposition approach
Andrew Wei Xu
LNCS/LNBI
5267
, 2008, pp. 184-197
A phylogenetic approach to genetic map refinement
Denis Bertrand
,
Mathieu Blanchette
,
Nadia El-Mabrouk
LNCS/LNBI
5267
, 2008, pp. 198-210
Sorting cancer karyotypes by elementary operations
Michal Ozery-Flato
,
Ron Shamir
LNCS/LNBI
5267
, 2008, pp. 211-225
On computing the breakpoint reuse rate in rearrangement scenarios
Anne Bergeron
,
Julia Mixtacki
,
Jens Stoye
LNCS/LNBI
5267
, 2008, pp. 226-240
Hurdles hardly have to be heeded
Krister M. Swenson
,
Yu Lin
,
Vaibhav Rajan
,
Bernard M.E. Moret
LNCS/LNBI
5267
, 2008, pp. 241-251
Internal validation of ancestral gene order reconstruction in angiosperm phylogeny
David Sankoff
,
Chunfang Zheng
,
P. Kerr Wall
,
Claude dePamphilis
,
Jim Leebens-Mack
,
Victor A. Albert
LNCS/LNBI
5267
, 2008, pp. 252-264
Computational biology: Its challenges past, present, and future
Temple F. Smith
LNCS/LNBI
4955
, 2008, pp. 1-2
Bootstrapping the interactome: Unsupervised identification of protein complexes in yeast
Caroline C. Friedel
,
Jan Krumsiek
,
Ralf Zimmer
LNCS/LNBI
4955
, 2008, pp. 3-16
CompostBin: A DNA composition-based algorithm for binning environmental shotgun reads
Sourav Chatterji
,
Ichitaro Yamazaki
,
Zhaojun Bai
,
Jonathan A. Eisen
LNCS/LNBI
4955
, 2008, pp. 17-28
Reconstructing the evolutionary history of complex human gene clusters
Yu Zhang
,
Giltae Song
,
Tomás̑ Vinaȓ
,
Eric D. Green
,
Adam Siepel
,
Webb Miller
LNCS/LNBI
4955
, 2008, pp. 29-49
Ab initio whole genome shotgun assembly with mated short reads
Paul Medvedev
,
Michael Brudno
LNCS/LNBI
4955
, 2008, pp. 50-64
Orchestration of DNA methylation
Howard Cedar
LNCS/LNBI
4955
, 2008, pp. 65-65
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