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Technische Universität München
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Reconstructing domain compositions of ancestral multi-domain proteins
Behshad Behzadi
,
Martin Vingron
LNCS/LNBI
4205
, 2006, pp. 1-10
Domain architecture in homolog identification
N. Song
,
R.D. Sedgewick
,
D. Durand
LNCS/LNBI
4205
, 2006, pp. 11-23
Inferring positional homologs with common intervals of sequences
Guillaume Blin
,
Annie Chateau
,
Cedric Chauve
,
Yannick Gingras
LNCS/LNBI
4205
, 2006, pp. 24-38
On genome evolution with accumulated change and innovation
Damian Wójtowicz
,
Jerzy Tiuryn
LNCS/LNBI
4205
, 2006, pp. 39-50
Paths and cycles in breakpoint graphs of random multichromosomal genomes
Wei Xu
,
Chunfang Zheng
,
David Sankoff
LNCS/LNBI
4205
, 2006, pp. 51-62
Common intervals and symmetric difference in a model-free phylogenomics, with an application to streptophyte evolution
Zaky Adam
,
Monique Turmel
,
Claude Lemieux
,
David Sankoff
LNCS/LNBI
4205
, 2006, pp. 63-74
How pseudo-Boolean programming can help genome rearrangement distance computation
Sébastien Angibaud
,
Guillaume Fertin
,
Irena Rusu
,
Stéphane Vialette
LNCS/LNBI
4205
, 2006, pp. 75-86
Sorting by translocations via reversals theory
Michal Ozery-Flato
,
Ron Shamir
LNCS/LNBI
4205
, 2006, pp. 87-98
Inferring gene orders from gene maps using the breakpoint distance
Guillaume Blin
,
Eric Blais
,
Pierre Guillon
,
Mathieu Blanchette
,
Nadia El-Mabrouk
LNCS/LNBI
4205
, 2006, pp. 99-112
Ordering partially assembled genomes using gene arrangements
Éric Gaul
,
Mathieu Blanchette
LNCS/LNBI
4205
, 2006, pp. 113-128
Evolution of tandemly repeated sequences through duplication and inversion
Denis Bertrand
,
Mathieu Lajoie
,
Nadia El-Mabrouk
,
Olivier Gascuel
LNCS/LNBI
4205
, 2006, pp. 129-140
A PQ framework for reconstructions of common ancestors and phylogeny
Laxmi Parida
LNCS/LNBI
4205
, 2006, pp. 141-155
Intron loss dynamics in mammals
Jasmin Coulombe-Huntington
,
Jacek Majewski
LNCS/LNBI
4205
, 2006, pp. 156-170
Finding maximum likelihood indel scenarios
Abdoulaye Baniré Diallo
,
Vladimir Makarenkov
,
Mathieu Blanchette
LNCS/LNBI
4205
, 2006, pp. 171-185
Conservation patterns in
cis
-elements reveal compensatory mutations
Perry Evans
,
Greg Donahue
,
Sridhar Hannenhalli
LNCS/LNBI
4205
, 2006, pp. 186-199
Transcription factor centric discovery of regulatory elements in mammalian genomes using alignment-independent conservation maps
Nilanjana Banerjee
,
Andrea Califano
LNCS/LNBI
4205
, 2006, pp. 200-214
Identifiability issues in phylogeny-based detection of horizontal gene transfer
Cuong Than
,
Derek Ruths
,
Hideki Innan
,
Luay Nakhleh
LNCS/LNBI
4205
, 2006, pp. 215-229
Integrated protein interaction networks for 11 microbes
Balaji S. Srinivasan
,
Antal F. Novak
,
Jason A. Flannick
,
Serafim Batzoglou
,
Harley H. McAdams
LNCS/LNBI
3909
, 2006, pp. 1-14
Hypergraph model of multi-residue interactions in proteins: Sequentially-constrained partitioning algorithms for optimization of site-directed protein recombination
Xiaoduan Ye
,
Alan M. Friedman
,
Chris Bailey-Kellogg
LNCS/LNBI
3909
, 2006, pp. 15-29
Biological networks: Comparison, conservation, and evolutionary trees
Benny Chor
,
Tamir Tuller
LNCS/LNBI
3909
, 2006, pp. 30-44
Assessing significance of connectivity and conservation in protein interaction networks
Mehmet Koyutürk
,
Ananth Grama
,
Wojciech Szpankowski
LNCS/LNBI
3909
, 2006, pp. 45-59
Clustering short gene expression profiles
Ling Wang
,
Marco Ramoni
,
Paola Sebastiani
LNCS/LNBI
3909
, 2006, pp. 60-68
A patient-gene model for temporal expression profiles in clinical studies
Naftali Kaminski
,
Ziv Bar-Joseph
LNCS/LNBI
3909
, 2006, pp. 69-82
Global interaction networks probed by mass spectrometry
Anne-Claude Gavin
LNCS/LNBI
3909
, 2006, pp. 83-83
Statistical evaluation of genome rearrangement
David Sankoff
LNCS/LNBI
3909
, 2006, pp. 84-84
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