Fakultät für Informatik
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Technische Universität München
Lehrstuhl für Effiziente Algorithmen
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Spectral clustering gene ontology terms to group genes by function
Nora Speer
,
Christian Spieth
,
Andreas Zell
LNCS/LNBI
3692
, 2005, pp. 1-12
Dynamic de-novo prediction of microRNAs associated with cell conditions: A search pruned by expression
Chaya Ben-Zaken Zilberstein
,
Michal Ziv-Ukelson
LNCS/LNBI
3692
, 2005, pp. 13-26
Clustering gene expression series with prior knowledge
Laurent Breh́hélin
LNCS/LNBI
3692
, 2005, pp. 27-38
A linear time biclustering algorithm for time series gene expression data
Sara C. Madeira
,
Arlindo L. Oliveira
LNCS/LNBI
3692
, 2005, pp. 39-52
Time-window analysis of developmental gene expression data with multiple genetic backgrounds
Tamir Tuller
,
Efrat Oron
,
Erez Makavy
,
Daniel A. Chamovitz
,
Benny Chor
LNCS/LNBI
3692
, 2005, pp. 53-64
A lookahead branch-and-bound algorithm for the maximum quartet consistency problem
Gang Wu
,
Jia-Huai You
,
Guohui Lin
LNCS/LNBI
3692
, 2005, pp. 65-76
Computing the quartet distance between trees of arbitrary degree
Chris Christiansen
,
Thomas Mailund
,
Christian N.S. Pedersen
,
Martin Randers
LNCS/LNBI
3692
, 2005, pp. 77-88
Using semi-definite programming to enhance supertree resolvability
Shlomo Moran
,
Satish Rao
,
Sagi Snir
LNCS/LNBI
3692
, 2005, pp. 89-103
An efficient reduction from constrained to unconstrained maximum agreement subtree
Z.S. Peng
,
H.F. Ting
LNCS/LNBI
3692
, 2005, pp. 104-115
Pattern identification in biogeography
Ganeshkumar Ganapathy
,
Barbara Goodson
,
Robert Jansen
,
Vijaya Ramachandran
,
Tandy Warnow
LNCS/LNBI
3692
, 2005, pp. 116-127
On the complexity of several haplotyping problems
Rudi Cilibrasi
,
Leo van Iersel
,
Steven Kelk
,
John Tromp
LNCS/LNBI
3692
, 2005, pp. 128-139
A hidden Markov technique for haplotype reconstruction
Pasi Rastas
,
Mikko Koivisto
,
Heikki Mannila
,
Esko Ukkonen
LNCS/LNBI
3692
, 2005, pp. 140-151
Algorithms for imperfect phylogeny haplotyping (IPPH) with a single homoplasy or recombination event
Yun S. Song
,
Yufeng Wu
,
Dan Gusfield
LNCS/LNBI
3692
, 2005, pp. 152-164
A faster algorithm for detecting network motifs
Sebastian Wernicke
LNCS/LNBI
3692
, 2005, pp. 165-177
Reaction motifs in metabolic networks
Vincent Lacroix
,
Cristina G. Fernandes
,
Marie-France Sagot
LNCS/LNBI
3692
, 2005, pp. 178-191
Reconstructing metabolic networks using interval analysis
Warwick Tucker
,
Vincent Moulton
LNCS/LNBI
3692
, 2005, pp. 192-203
A 1.375-approximation algorithm for sorting by transpositions
Isaac Elias
,
Tzvika Hartman
LNCS/LNBI
3692
, 2005, pp. 204-215
A new tight upper bound on the transposition distance
Anthony Labarre
LNCS/LNBI
3692
, 2005, pp. 216-227
Perfect sorting by reversals is not always difficult
Sèverine Bérard
,
Anne Bergeron
,
Cedric Chauve
,
Christophe Paul
LNCS/LNBI
3692
, 2005, pp. 228-238
Minimum recombination histories by branch and bound
B. Rune Lyngs
,
Yun S.Song
,
Jotun Hein
LNCS/LNBI
3692
, 2005, pp. 239-250
A unifying framework for seed sensitivity and its application to subset seeds
Gregory Kucherov
,
Laurent Noé
,
Mikhail Roytberg
LNCS/LNBI
3692
, 2005, pp. 251-263
Generalized planted
(l,d)
-motif problem with negative set
Henry C.M. Leung
,
Francis Y.L. Chin
LNCS/LNBI
3692
, 2005, pp. 264-275
Alignment of tandem repeats with excision, duplication, substitution and indels (EDSI)
Michael Sammeth
,
Thomas Weniger
,
Dag Harmsen
,
Jens Stoye
LNCS/LNBI
3692
, 2005, pp. 276-290
The Peres-Shields order estimator for fixed and variable length Markov models with applications to DNA sequence similarity
Daniel Dalevi
,
Devdatt Dubhashi
LNCS/LNBI
3692
, 2005, pp. 291-302
Multiple structural RNA alignment with Lagrangian relaxation
Markus Bauer
,
Gunnar W. Klau
,
Knut Reinert
LNCS/LNBI
3692
, 2005, pp. 303-314
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