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An algorithmic framework for predicting side-effects of drugs
Nir Atias
,
Roded Sharan
LNCS/LNBI
6044
, 2010, pp. 1-14
SubMAP: Aligning metabolic pathways with subnetwork mappings
Ferhat Ay
,
Tamer Kahveci
LNCS/LNBI
6044
, 2010, pp. 15-30
Admixture aberration analysis: Application to mapping in admixed population using pooled DNA
Sivan Bercovici
,
Dan Geiger
LNCS/LNBI
6044
, 2010, pp. 31-49
Pathway-based functional analysis of metagenomes
Sivan Bercovici
,
Itai Sharon
,
Ron Y. Pinter
,
Tomer Shlomi
LNCS/LNBI
6044
, 2010, pp. 50-64
Hierarchical generative biclustering for microRNA expression analysis
José Caldas
,
Samuel Kaski
LNCS/LNBI
6044
, 2010, pp. 65-79
Subnetwork state functions define dysregulated subnetworks in cancer
Salim A. Chowdhury
,
Rod K. Nibbe
,
Mark R. Chance
,
Mehmet Koyutürk
LNCS/LNBI
6044
, 2010, pp. 80-95
Proteome coverage prediction for integrated proteomics datasets
Manfred Claassen
,
Ruedi Aebersold
,
Joachim M. Buhmann
LNCS/LNBI
6044
, 2010, pp. 96-109
Discovering regulatory overlapping RNA transcripts
Timothy Danford
,
Robin Dowell
,
Sudeep Agarwala
,
Paula Grisafi
,
Gerald Fink
,
David Gifford
LNCS/LNBI
6044
, 2010, pp. 110-122
Alignment-free phylogenetic reconstruction
Constantinos Daskalakis
,
Sebastien Roch
LNCS/LNBI
6044
, 2010, pp. 123-137
Inference of isoforms from short sequence reads
Jianxing Feng
,
Wei Li
,
Tao Jiang
LNCS/LNBI
6044
, 2010, pp. 138-157
The Clark phase-able sample size problem: Long-range phasing and loss of heterozygosity in GWAS
Bjarni V. Halldórsson
,
Derek Aguiar
,
Ryan Tarpine
,
Sorin Istrail
LNCS/LNBI
6044
, 2010, pp. 158-173
A new algorithm for improving the resolution of cryo-EM density maps
Michael Hirsch
,
Bernhard Schölkopf
,
Michael Habeck
LNCS/LNBI
6044
, 2010, pp. 174-188
Towards automated structure-based NMR resonance assignment
Richard Jang
,
Xin Gao
,
Ming Li
LNCS/LNBI
6044
, 2010, pp. 189-207
Gapped Spectral Dictionaries and their applications for database searches of tandem mass spectra
Kyowon Jeong
,
Sangtae Kim
,
Nuno Bandeira
,
Pavel A. Pevzner
LNCS/LNBI
6044
, 2010, pp. 208-232
naiveBayesCall: An efficient model-based base-calling algorithm for high-throughput sequencing
Wei-Chun Kao
,
Yun S. Song
LNCS/LNBI
6044
, 2010, pp. 233-247
Extracting between-pathway models from E-MAP interactions using Expected Graph Compression
David R. Kelley
,
Carl Kingsford
LNCS/LNBI
6044
, 2010, pp. 248-262
Simultaneous identification of causal genes and dys-regulated pathways in complex diseases
Yoo-Ah Kim
,
Stefan Wuchty
,
Teresa M. Przytycka
LNCS/LNBI
6044
, 2010, pp. 263-280
Incremental signaling pathway modeling by data integration
Geoffrey Koh
,
David Hsu
,
P.S. Thiagarajan
LNCS/LNBI
6044
, 2010, pp. 281-296
The poisson margin test for normalisation free significance analysis of NGS data
Adam Kowalczyk
,
Justin Bedo
,
Thomas Conway
,
Bryan Beresford-Smith
LNCS/LNBI
6044
, 2010, pp. 297-309
Compressing genomic sequence fragments using
SlimGene
Christos Kozanitis
,
Chris Saunders
,
Semyon Kruglyak
,
Vineet Bafna
,
George Varghese
LNCS/LNBI
6044
, 2010, pp. 310-324
On the genealogy of asexual diploids
Fumei Lam
,
Charles H. Langley
,
Yun S. Song
LNCS/LNBI
6044
, 2010, pp. 325-340
Genovo: De novo assembly for metagenomes
Jonathan Laserson
,
Vladimir Jojic
,
Daphne Koller
LNCS/LNBI
6044
, 2010, pp. 341-356
MoGUL: Detecting common insertions and deletions in a population
Seunghak Lee
,
Eric Xing
,
Michael Brudno
LNCS/LNBI
6044
, 2010, pp. 357-368
Generalized Buneman pruning for inferring the most parsimonious multi-state phylogeny
Navodit Misra
,
Guy Blelloch
,
R. Ravi
,
Russell Schwartz
LNCS/LNBI
6044
, 2010, pp. 369-383
Seed design framework for mapping SOLiD reads
Laurent Noé
,
Marta Gîrdea
,
Gregory Kucherov
LNCS/LNBI
6044
, 2010, pp. 384-396
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