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Technische Universität München
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Computational biology: Its challenges past, present, and future
Temple F. Smith
LNCS/LNBI
4955
, 2008, pp. 1-2
Bootstrapping the interactome: Unsupervised identification of protein complexes in yeast
Caroline C. Friedel
,
Jan Krumsiek
,
Ralf Zimmer
LNCS/LNBI
4955
, 2008, pp. 3-16
CompostBin: A DNA composition-based algorithm for binning environmental shotgun reads
Sourav Chatterji
,
Ichitaro Yamazaki
,
Zhaojun Bai
,
Jonathan A. Eisen
LNCS/LNBI
4955
, 2008, pp. 17-28
Reconstructing the evolutionary history of complex human gene clusters
Yu Zhang
,
Giltae Song
,
Tomás̑ Vinaȓ
,
Eric D. Green
,
Adam Siepel
,
Webb Miller
LNCS/LNBI
4955
, 2008, pp. 29-49
Ab initio whole genome shotgun assembly with mated short reads
Paul Medvedev
,
Michael Brudno
LNCS/LNBI
4955
, 2008, pp. 50-64
Orchestration of DNA methylation
Howard Cedar
LNCS/LNBI
4955
, 2008, pp. 65-65
BayCis: A Bayesian hierarchical HMM for cis-regulatory module decoding in metazoan genomes
Tien-ho Lin
,
Pradipta Ray
,
Geir K. Sandve
,
Selen Uguroglu
,
Eric P. Xing
LNCS/LNBI
4955
, 2008, pp. 66-81
A combined expression-interaction model for inferring the temporal activity of transcription factors
Yanxin Shi
,
Itamar Simon
,
Tom Mitchell
,
Ziv Bar-Joseph
LNCS/LNBI
4955
, 2008, pp. 82-97
A fast, alignment-free, conservation-based method for transcription factor binding site discovery
Raluca Gordân
,
Leelavati Narlikar
,
Alexander J. Hartemink
LNCS/LNBI
4955
, 2008, pp. 98-111
The statistical power of phylogenetic motif models
John Hawkins
,
Timothy L. Bailey
LNCS/LNBI
4955
, 2008, pp. 112-126
Automatic recognition of cells (ARC) for 3D images of C. elegans
Fuhui Long
,
Hanchuan Peng
,
Xiao Liu
,
Stuart Kim
,
Gene Myers
LNCS/LNBI
4955
, 2008, pp. 128-139
Spectrum fusion: Using multiple mass spectra for de novo peptide sequencing
Ritendra Datta
,
Marshall Bern
LNCS/LNBI
4955
, 2008, pp. 140-153
A fragmentation event model for peptide identification by mass spectrometry
Yu Lin
,
Yantao Qiao
,
Shiwei Sun
,
Chungong Yu
,
Gongjin Dong
,
Dongbo Bu
LNCS/LNBI
4955
, 2008, pp. 154-166
A Bayesian approach to protein inference problem in shotgun proteomics
Yong Fuga Li
,
Randy J. Arnold
,
Yixue Li
,
Predrag Radivojac
,
Quanhu Sheng
,
Haixu Tang
LNCS/LNBI
4955
, 2008, pp. 167-180
De novo sequencing of nonribosomal peptides
Nuno Bandeira
,
Julio Ng
,
Dario Meluzzi
,
Roger G. Linington
,
Pieter Dorrestein
,
Pavel A. Pevzner
LNCS/LNBI
4955
, 2008, pp. 181-195
Systems metabolic engineering
Sang Yup Lee
LNCS/LNBI
4955
, 2008, pp. 196-196
Protein function prediction based on patterns in biological networks
Mustafa Kirac
,
Gultekin Ozsoyoglu
LNCS/LNBI
4955
, 2008, pp. 197-213
Automatic parameter learning for multiple network alignment
Jason Flannick
,
Antal Novak
,
Chuong B. Do
,
Balaji S. Srinivasan
,
Serafim Batzoglou
LNCS/LNBI
4955
, 2008, pp. 214-231
An integrative network approach to map the transcriptome to the phenome
Michael R. Mehan
,
Juan Nunez-Iglesias
,
Mrinal Kalakrishnan
,
Michael S. Waterman
,
Xianghong Jasmine Zhou
LNCS/LNBI
4955
, 2008, pp. 232-245
Fast and accurate alignment of multiple protein networks
Maxim Kalaev
,
Vineet Bafna
,
Roded Sharan
LNCS/LNBI
4955
, 2008, pp. 246-256
High-resolution modeling of cellular signaling networks
Michael Baym
,
Chris Bakal
,
Norbert Perrimon
,
Bonnie Berger
LNCS/LNBI
4955
, 2008, pp. 257-271
At the origin of life: How did folded proteins evolve?
Andrei Lupas
LNCS/LNBI
4955
, 2008, pp. 272-272
Locating multiple gene duplications through reconciled trees
J. Gordon Burleigh
,
Mukul S. Bansal
,
Andre Wehe
,
Oliver Eulenstein
LNCS/LNBI
4955
, 2008, pp. 273-284
Rapid and accurate protein side chain prediction with local backbone information
Jing Zhang
,
Xin Gao
,
Jinbo Xu
,
Ming Li
LNCS/LNBI
4955
, 2008, pp. 285-299
Algorithms for joint optimization of stability and diversity in planning combinatorial libraries of chimeric proteins
Wei Zheng
,
Alan M. Friedman
,
Chris Bailey-Kellogg
LNCS/LNBI
4955
, 2008, pp. 300-314
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