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Multi-break rearrangements: From circular to linear genomes
Max A. Alekseyev
LNCS/LNBI
4751
, 2007, pp. 1-15
A pseudo-Boolean programming approach for computing the breakpoint distance between two genomes with duplicate genes
Sébastien Angibaud
,
Guillaume Fertin
,
Irena Rusu
,
Annelyse Thévenin
,
Stéphane Vialette
LNCS/LNBI
4751
, 2007, pp. 16-29
Improving inversion median computation using commuting reversals and cycle information
William Arndt
,
Jijun Tang
LNCS/LNBI
4751
, 2007, pp. 30-44
Inferring a duplication, speciation and loss history from a gene tree
Cedric Chauve
,
Jean-Philippe Doyon
,
Nadia El-Mabrouk
LNCS/LNBI
4751
, 2007, pp. 45-57
How to achieve an equivalent simple permutation in linear time
Simon Gog
,
Martin Bader
LNCS/LNBI
4751
, 2007, pp. 58-68
Baculovirus phylogeny based on genome rearrangements
Daniel Goodman
,
Noah Ollikainen
,
Chris Sholley
LNCS/LNBI
4751
, 2007, pp. 69-82
Learning gene regulatory networks via globally regularized risk minimization
Yuhong Guo
,
Dale Schuurmans
LNCS/LNBI
4751
, 2007, pp. 83-95
Evolution of tandemly arrayed genes in multiple species
Mathieu Lajoie
,
Denis Bertrand
,
Nadia El-Mabrouk
LNCS/LNBI
4751
, 2007, pp. 96-109
Selecting genomes for reconstruction of ancestral genomes
Guoliang Li
,
Jian Ma
,
Louxin Zhang
LNCS/LNBI
4751
, 2007, pp. 110-121
A heuristic algorithm for reconstructing ancestral gene orders with duplications
Jian Ma
,
Aakrosh Ratan
,
Louxin Zhang
,
Webb Miller
,
David Haussler
LNCS/LNBI
4751
, 2007, pp. 122-135
Reconstructing an inversion history in the Anopheles gambiae complex
Ai Xia
,
Maria V. Sharakhova
,
Igor V. Sharakhov
LNCS/LNBI
4751
, 2007, pp. 136-148
Recovering true rearrangement events on phylogenetic trees
Hao Zhao
,
Guillaume Bourque
LNCS/LNBI
4751
, 2007, pp. 149-161
Parts of the problem of polyploids in rearrangement phylogeny
Chunfang Zheng
,
Qian Zhu
,
David Sankoff
LNCS/LNBI
4751
, 2007, pp. 162-176
A rigorous analysis of the pattern of intron conservation supports the Coelomata clade of animals
Jie Zheng
,
Igor B. Rogozin
,
Eugene V. Koonin
,
Teresa M. Przytycka
LNCS/LNBI
4751
, 2007, pp. 177-191