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Not all scale free networks are born equal: The role of the seed graph in PPI network emulation
Fereydoun Hormozdiari
,
Petra Berenbrink
,
Natas̑a Prz̑ulj
,
Cenk Sahinalp
LNCS/LNBI
4532
, 2007, pp. 1-13
Probabilistic paths for protein complex inference
Hailiang Huang
,
Lan V. Zhang
,
Frederick P. Roth
,
Joel S. Bader
LNCS/LNBI
4532
, 2007, pp. 14-28
Markov additive chains and applications to fragment statistics for peptide mass fingerprinting
Hans-Michael Kaltenbach
,
Sebastian Böcker
,
Sven Rahmann
LNCS/LNBI
4532
, 2007, pp. 29-41
A context-specific network of protein-DNA and protein-protein interactions reveals new regulatory motifs in human B cells
Celine Lefebvre
,
Wei Keat Lim
,
Katia Basso
,
Riccardo Dalla Favera
,
Andrea Califano
LNCS/LNBI
4532
, 2007, pp. 42-56
Identification and evaluation of functional modules in gene co-expression networks
Jianhua Ruan
,
Weixiong Zhang
LNCS/LNBI
4532
, 2007, pp. 57-76
A linear discrete dynamic system model for temporal gene interaction and regulatory network influence in response to bioethanol conversion inhibitor HMF for ethanologenic yeast
Mingzhou (Joe) Song
,
Z. Lewis Liu
LNCS/LNBI
4532
, 2007, pp. 77-95
A computational approach for the identification of site-specific protein glycosylations through ion-trap mass spectrometry
Yin Wu
,
Yehia Mechref
,
Iveta Klouckova
,
Milos V. Novotny
,
Haixu Tang
LNCS/LNBI
4532
, 2007, pp. 96-107
De novo signaling pathway predictions based on protein-protein interaction, targeted therapy and protein microarray analysis
Derek Ruths
,
Jen-Te Tseng
,
Luay Nakhleh
,
Prahlad T. Ram
LNCS/LNBI
4532
, 2007, pp. 108-118
Alignment of mass spectrometry data by clique finding and optimization
Daniel Fasulo
,
Anne-Katrin Emde
,
Lu-Yong Wang
,
Karin Noy
,
Nathan Edwards
LNCS/LNBI
4532
, 2007, pp. 119-129