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QNet: A tool for querying protein interaction networks
Banu Dost
,
Tomer Shlomi
,
Nitin Gupta
,
Eytan Ruppin
,
Vineet Bafna
,
Roded Sharan
LNCS/LNBI
4453
, 2007, pp. 1-15
Pairwise global alignment of protein interaction networks by matching neighborhood topology
Rohit Singh
,
Jinbo Xu
,
Bonnie Berger
LNCS/LNBI
4453
, 2007, pp. 16-31
Reconstructing the topology of protein complexes
Allister Bernard
,
David S. Vaughn
,
Alexander J. Hartemink
LNCS/LNBI
4453
, 2007, pp. 32-46
Network legos: Building blocks of cellular wiring diagrams
T.M. Murali
,
Corban G. Rivera
LNCS/LNBI
4453
, 2007, pp. 47-61
An efficient method for dynamic analysis of gene regulatory networks and insilico gene perturbation experiments
Abhishek Garg
,
Ioannis Xenarios
,
Luis Mendoza
,
Giovanni DeMicheli
LNCS/LNBI
4453
, 2007, pp. 62-76
A feature-based approach to modeling protein-DNA interactions
Eilon Sharon
,
Eran Segal
LNCS/LNBI
4453
, 2007, pp. 77-91
Network motif discovery using subgraph enumeration and symmetry-breaking
Joshua A. Grochow
,
Manolis Kellis
LNCS/LNBI
4453
, 2007, pp. 92-106
Nucleosome occupancy information improves de novo motif discovery
Leelavati Narlikar
,
Raluca Gordân
,
Alexander J. Hartemink
LNCS/LNBI
4453
, 2007, pp. 107-121
Framework for identifying common aberrations in DNA copy number data
Amir Ben-Dor
,
Doron Lipson
,
Anya Tsalenko
,
Mark Reimers
,
Lars O. Baumbusch
,
Michael T. Barrett
,
John N. Weinstein
,
Anne-Lise Brresen-Dale
,
Zohar Yakhini
LNCS/LNBI
4453
, 2007, pp. 122-136
Estimating genome-wide copy number using allele specific mixture models
Wenyi Wang
,
Benilton Carvalho
,
Nate Miller
,
Jonathan Pevsner
,
Aravinda Chakravarti
,
Rafael A. Irizarry
LNCS/LNBI
4453
, 2007, pp. 137-150
GIMscan: A new statistical method for analyzing whole-genome array CGH data
Yanxin Shi
,
Fan Guo
,
Wei Wu
,
Eric P. Xing
LNCS/LNBI
4453
, 2007, pp. 151-165
Production-passage-time approximation: A new approximation method to accelerate the simulation process of enzymatic reactions
Hiroyuki Kuwahara
,
Chris Myers
LNCS/LNBI
4453
, 2007, pp. 166-180
Shift-invariant adaptive double threading: Learning MHC II - peptide binding
Noah Zaitlen
,
Manuel Reyes-Gomez
,
David Heckerman
,
Nebojsa Jojic
LNCS/LNBI
4453
, 2007, pp. 181-195
Reconstructing the phylogeny of mobile elements
Sean O'Rourke
,
Noah Zaitlen
,
Nebojsa Jojic
,
Eleazar Eskin
LNCS/LNBI
4453
, 2007, pp. 196-210
Beyond galled trees - Decomposition and computation of galled networks
Daniel H. Huson
,
Tobias H. Klöpper
LNCS/LNBI
4453
, 2007, pp. 211-225
Variational upper bounds for probabilistic phylogenetic models
Ydo Wexler
,
Dan Geiger
LNCS/LNBI
4453
, 2007, pp. 226-237
Heuristics for the gene-duplication problem: A
\Theta(n)
speed-up for the local search
Mukul S. Bansal
,
J. Gordon Burleigh
,
Oliver Eulenstein
,
André Wehe
LNCS/LNBI
4453
, 2007, pp. 238-252
Support vector training of protein alignment models
Chun-Nam John Yu
,
Thorsten Joachims
,
Ron Elber
,
Jaroslaw Pillardy
LNCS/LNBI
4453
, 2007, pp. 253-267
Tools for simulating and analyzing RNA folding kinetics
Xinyu Tang
,
Shawna Thomas
,
Lydia Tapia
,
Nancy M. Amato
LNCS/LNBI
4453
, 2007, pp. 268-282
Multiple sequence alignment based on profile alignment of intermediate sequences
Yue Lu
,
Sing-Hoi Sze
LNCS/LNBI
4453
, 2007, pp. 283-295
Connectedness profiles in protein networks for the analysis of gene expression data
Joël Pradines
,
Vlado Danc̑ík
,
Alan Ruttenberg
,
Victor Farutin
LNCS/LNBI
4453
, 2007, pp. 296-310
Multivariate segmentation in the analysis of transcription tiling array data
Antonio Piccolboni
LNCS/LNBI
4453
, 2007, pp. 311-324
A Bayesian model that links microarray mRNA measurements to mass spectrometry protein measurements
Anitha Kannan
,
Andrew Emili
,
Brendan J. Frey
LNCS/LNBI
4453
, 2007, pp. 325-338
Rearrangements in genomes with centromeres part I: Translocations
Michal Ozery-Flato
,
Ron Shamir
LNCS/LNBI
4453
, 2007, pp. 339-353
Identification of deletion polymorphisms from haplotypes
Erik Corona
,
Benjamin Raphael
,
Eleazar Eskin
LNCS/LNBI
4453
, 2007, pp. 354-365
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