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An interactive map of regulatory networks of Pseudomonas aeruginosa genome
Weihui Wu
,
Yongling Song
,
Shouguang Jin
,
Su-Shing Chen
LNCS/LNBI
4023
, 2007, pp. 1-10
The pathalyzer: A tool for analysis of signal transduction pathways
David L. Dill
,
Merrill A. Knapp
,
Pamela Gage
,
Carolyn Talcott
,
Keith Laderoute
,
Patrick Lincoln
LNCS/LNBI
4023
, 2007, pp. 11-22
Decomposition of overlapping protein complexes: A graph theoretical method for analyzing static and dynamic protein associations
Elena Zotenko
,
Katia S. Guimarães
,
Raja Jothi
,
Teresa M. Przytycka
LNCS/LNBI
4023
, 2007, pp. 23-38
Comparison of protein-protein interaction confidence assignment schemes
Silpa Suthram
,
Tomer Shlomi
,
Eytan Ruppin
,
Roded Sharan
,
Trey Ideker
LNCS/LNBI
4023
, 2007, pp. 39-50
Characterization of the effects of TF binding site variations on gene expression towards predicting the functional outcomes of regulatory SNPs
Michal Lapidot
,
Yitzhak Pilpel
LNCS/LNBI
4023
, 2007, pp. 51-61
Comparative systems biology of the sporulation initiation network in prokaryotes
Michiel de Hoon
,
Dennis Vitkup
LNCS/LNBI
4023
, 2007, pp. 62-69
Improvement of computing times in Boolean networks using chi-square tests
Haseong Kim
,
Jae K. Lee
,
Taesung Park
LNCS/LNBI
4023
, 2007, pp. 70-79
Build a dictionary, learn a grammar, decipher stegoscripts, and discover genomic regulatory elements
Guandong Wang
,
Weixiong Zhang
LNCS/LNBI
4023
, 2007, pp. 80-94
Causal inference of regulator-target pairs by gene mapping of expression phenotypes
David Kulp
,
Manjunatha Jagalur
LNCS/LNBI
4023
, 2007, pp. 95-106
Examination of the tRNA adaptation index as a predictor of protein expression levels
Orna Man
,
Joel L. Sussman
,
Yitzhak Pilpel
LNCS/LNBI
4023
, 2007, pp. 107-118
Improved duplication models for proteome network evolution
Gürkan Bebek
,
Petra Berenbrink
,
Colin Cooper
,
Tom Friedetzky
,
Joseph H. Nadeau
,
S. Cenk Sahinalp
LNCS/LNBI
4023
, 2007, pp. 119-137
Application of expectation maximization clustering to transcription factor binding positions for cDNA microarray analysis
Chih-Yu Chen
,
Von-Wun Soo
,
Chi-Li Kuo
LNCS/LNBI
4023
, 2007, pp. 138-149
Combinatorial genetic regulatory network analysis tools for high throughput transcriptomic data
Elissa J. Chesler
,
Michael A. Langston
LNCS/LNBI
4023
, 2007, pp. 150-165
Topological robustness of the protein-protein interaction networks
Chien-Hung Huang
,
Jywe-Fei Fang
,
Jeffrey J.P. Tsai
,
Ka-Lok Ng
LNCS/LNBI
4023
, 2007, pp. 166-177
A Bayesian approach for integrating transcription regulation and gene expression: Application to Saccharomyces Cerevisiae Cell Cycle data
Sudhakar Jonnalagadda
,
Rajagopalan Srinivasan
LNCS/LNBI
4023
, 2007, pp. 178-187
Probabilistic in silico prediction of protein-peptide interactions
Wolfgang Lehrach
,
Dirk Husmeier
,
Christopher K.I. Williams
LNCS/LNBI
4023
, 2007, pp. 188-197
Improved pattern-driven algorithms for motif finding in DNA sequences
Sing-Hoi Sze
,
Xiaoyan Zhao
LNCS/LNBI
4023
, 2007, pp. 198-211
Annotation of promoter regions in microbial genomes based on DNA structural and sequence properties
Huiquan Wang
,
Craig J. Benham
LNCS/LNBI
4023
, 2007, pp. 212-224
An interaction-dependent model for transcription factor binding
Li-San Wang
,
Shane T. Jensen
,
Sridhar Hannenhalli
LNCS/LNBI
4023
, 2007, pp. 225-234
Computational characterization and identification of core promoters of MicroRNA genes in C. elegans, H. sapiens and A. thaliana
Xuefeng Zhou
,
Jianhua Ruan
,
Guandong Wang
,
Weixiong Zhang
LNCS/LNBI
4023
, 2007, pp. 235-248
A comprehensive kinetic model of the exocytotic process: Evaluation of the reaction mechanism
Aviv Mezer
,
Eran Bosis
,
Uri Ashery
,
Esther Nachliel
,
Menachem Gutman
LNCS/LNBI
4023
, 2007, pp. 249-257