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Integrated protein interaction networks for 11 microbes
Balaji S. Srinivasan
,
Antal F. Novak
,
Jason A. Flannick
,
Serafim Batzoglou
,
Harley H. McAdams
LNCS/LNBI
3909
, 2006, pp. 1-14
Hypergraph model of multi-residue interactions in proteins: Sequentially-constrained partitioning algorithms for optimization of site-directed protein recombination
Xiaoduan Ye
,
Alan M. Friedman
,
Chris Bailey-Kellogg
LNCS/LNBI
3909
, 2006, pp. 15-29
Biological networks: Comparison, conservation, and evolutionary trees
Benny Chor
,
Tamir Tuller
LNCS/LNBI
3909
, 2006, pp. 30-44
Assessing significance of connectivity and conservation in protein interaction networks
Mehmet Koyutürk
,
Ananth Grama
,
Wojciech Szpankowski
LNCS/LNBI
3909
, 2006, pp. 45-59
Clustering short gene expression profiles
Ling Wang
,
Marco Ramoni
,
Paola Sebastiani
LNCS/LNBI
3909
, 2006, pp. 60-68
A patient-gene model for temporal expression profiles in clinical studies
Naftali Kaminski
,
Ziv Bar-Joseph
LNCS/LNBI
3909
, 2006, pp. 69-82
Global interaction networks probed by mass spectrometry
Anne-Claude Gavin
LNCS/LNBI
3909
, 2006, pp. 83-83
Statistical evaluation of genome rearrangement
David Sankoff
LNCS/LNBI
3909
, 2006, pp. 84-84
An improved statistic for detecting over-represented gene ontology annotations in gene sets
Steffen Grossmann
,
Sebastian Bauer
,
Peter N. Robinson
,
Martin Vingron
LNCS/LNBI
3909
, 2006, pp. 85-98
Protein function annotation based on ortholog clusters extracted from incomplete genomes using combinatorial optimization
Akshay Vashist
,
Casimir Kulikowski
,
Ilya Muchnik
LNCS/LNBI
3909
, 2006, pp. 99-113
Detecting microRNA targets by linking sequence, microRNA and gene expression data
Jim C. Huang
,
Quaid D. Morris
,
Brendan J. Frey
LNCS/LNBI
3909
, 2006, pp. 114-129
RNA secondary structure prediction via energy density minimization
Can Alkan
,
Emre Karakoc
,
S. Cenk Sahinalp
,
Peter Unrau
,
H. Alexander Ebhardt
,
Kaizhong Zhang
,
Jeremy Buhler
LNCS/LNBI
3909
, 2006, pp. 130-142
Structural alignment of pseudoknotted RNA
Banu Dost
,
Buhm Han
,
Shaojie Zhang
,
Vineet Bafna
LNCS/LNBI
3909
, 2006, pp. 143-158
Stan Ulam and computational biology
Michael S. Waterman
LNCS/LNBI
3909
, 2006, pp. 159-159
CONTRAlign: Discriminative training for protein sequence alignment
Chuong B. Do
,
Samuel S. Gross
,
Serafim Batzoglou
LNCS/LNBI
3909
, 2006, pp. 160-174
Clustering near-identical sequences for fast homology search
Michael Cameron
,
Yaniv Bernstein
,
Hugh E. Williams
LNCS/LNBI
3909
, 2006, pp. 175-189
New methods for detecting lineage-specific selection
Adam Siepel
,
Katherine S. Pollard
,
David Haussler
LNCS/LNBI
3909
, 2006, pp. 190-205
A probabilistic model for gene content evolution with duplication, loss, and horizontal transfer
Miklós Csŭrös
,
István Miklós
LNCS/LNBI
3909
, 2006, pp. 206-220
A sublinear-time randomized approximation scheme for the Robinson-Foulds metric
Nicholas D. Pattengale
,
Bernard M.E. Moret
LNCS/LNBI
3909
, 2006, pp. 221-230
Algorithms to distinguish the role of gene-conversion from single-crossover recombination in the derivation of SNP sequences in populations
Yun S. Song
,
Zhihong Ding
,
Dan Gusfield
,
Charles H. Langley
,
Yufeng Wu
LNCS/LNBI
3909
, 2006, pp. 231-245
Inferring common origins from mtDNA
Ajay K. Royyuru
,
Gabriela Alexe
,
Daniel Platt
,
Ravi Vijaya-Satya
,
Laxmi Parida
,
Saharon Rosset
,
Gyan Bhanot
LNCS/LNBI
3909
, 2006, pp. 246-247
Efficient enumeration of phylogenetically informative substrings
Stanislav Angelov
,
Boulos Harb
,
Sampath Kannan
,
Sanjeev Khanna
,
Junhyong Kim
LNCS/LNBI
3909
, 2006, pp. 248-264
Phylogenetic profiling of insertions and deletions in vertebrate genomes
Sagi Snir
,
Lior Pachter
LNCS/LNBI
3909
, 2006, pp. 265-280
Maximal accurate forests from distance matrices
Constantinos Daskalakis
,
Cameron Hill
,
Alexandar Jaffe
,
Radu Mihaescu
,
Elehanan Mossel
,
Satish Rao
LNCS/LNBI
3909
, 2006, pp. 281-295
Leveraging information across HLA alleles/supertypes improves epitope prediction
David Heckerman
,
Carl Kadie
,
Jennifer Listgarten
LNCS/LNBI
3909
, 2006, pp. 296-308
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