Fakultät für Informatik
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Technische Universität München
Lehrstuhl für Effiziente Algorithmen
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AREM: Aligning short reads from ChIP-sequencing by expectation maximization
Daniel Newkirk
,
Jacob Biesinger
,
Alvin Chon
,
Kyoko Yokomori
,
Xiaohui Xie
LNCS/LNBI
6577
, 2011, pp. 283-297
Blocked pattern matching problem and its applications in proteomics
Julio Ng
,
Amihood Amir
,
Pavel A. Pevzner
LNCS/LNBI
6577
, 2011, pp. 298-319
A three-dimensional model of the yeast genome
William Noble
,
Zhi-jun Duan
,
Mirela Andronescu
,
Kevin Schutz
,
Sean McIlwain
,
Yoo Jung Kim
,
Choli Lee
,
Jay Shendure
,
Stanley Fields
,
C. Anthony Blau
LNCS/LNBI
6577
, 2011, pp. 320-320
Optimization of combinatorial mutagenesis
Andrew S. Parker
,
Karl E. Griswold
,
Chris Bailey-Kellogg
LNCS/LNBI
6577
, 2011, pp. 321-335
Seeing more is knowing more: V3D enables real-time 3D visualization and quantitative analysis of large-scale biological image data sets
Hanchuan Peng
,
Fuhui Long
LNCS/LNBI
6577
, 2011, pp. 336-336
T-IDBA: A de novo iterative de Bruijn graph assembler for transcriptome
Yu Peng
,
Henry C.M. Leung
,
S.M. Yiu
,
Francis Y.L. Chin
LNCS/LNBI
6577
, 2011, pp. 337-338
Experiment specific expression patterns
Tobias Petri
,
Robert Küffner
,
Ralf Zimmer
LNCS/LNBI
6577
, 2011, pp. 339-354
Geometric interpretation of gene expression by sparse reconstruction of transcript profiles
Yosef Prat
,
Menachem Fromer
,
Michal Linial
,
Nathan Linial
LNCS/LNBI
6577
, 2011, pp. 355-357
A ribosome flow model for analyzing translation elongation
Shlomi Reuveni
,
Isaac Meilijson
,
Martin Kupiec
,
Eytan Ruppin
,
Tamir Tuller
LNCS/LNBI
6577
, 2011, pp. 358-360
Design of protein-protein interactions with a novel ensemble-based scoring algorithm
Kyle E. Roberts
,
Patrick R. Cushing
,
Prisca Boisguerin
,
Dean R. Madden
,
Bruce R. Donald
LNCS/LNBI
6577
, 2011, pp. 361-376
Computing fragmentation trees from metabolite multiple mass spectrometry data
Kerstin Scheubert
,
Franziska Hufsky
,
Florian Rasche
,
Sebastian Böcker
LNCS/LNBI
6577
, 2011, pp. 377-391
Metric labeling and semi-metric embedding for protein annotation prediction
Emre Sefer
,
Carl Kingsford
LNCS/LNBI
6577
, 2011, pp. 392-407
Efficient traversal of beta-sheet protein folding pathways using ensemble models
Solomon Shenker
,
Charles W. O'Donnell
,
Srinivas Devadas
,
Bonnie Berger
,
Jérôme Waldispühl
LNCS/LNBI
6577
, 2011, pp. 408-423
Optimally orienting physical networks
Dana Silverbush
,
Michael Elberfeld
,
Roded Sharan
LNCS/LNBI
6577
, 2011, pp. 424-436
Opera: Reconstructing optimal genomic scaffolds with high-throughput paired-end sequences
Song Gao
,
Niranjan Nagarajan
,
Wing-Kin Sung
LNCS/LNBI
6577
, 2011, pp. 437-451
Increasing power of groupwise association test with likelihood ratio test
Jae Hoon Sul
,
Buhm Han
,
Eleazar Eskin
LNCS/LNBI
6577
, 2011, pp. 452-467
Conservative extensions of linkage disequilibrium measures from pairwise to multi-loci and algorithms for optimal tagging SNP selection
Ryan Tarpine
,
Fumei Lam
,
Sorin Istrail
LNCS/LNBI
6577
, 2011, pp. 468-482
Protein loop closure using orientational restraints from NMR data
Chittaranjan Tripathy
,
Jianyang Zeng
,
Pei Zhou
,
Bruce Randall Donald
LNCS/LNBI
6577
, 2011, pp. 483-498
De Novo
discovery of mutated driver pathways in cancer
Fabio Vandin
,
Eli Upfal
,
Benjamin J. Raphael
LNCS/LNBI
6577
, 2011, pp. 499-500
An unbiased adaptive sampling algorithm for the exploration of RNA mutational landscapes under evolutionary pressure
Jérôme Waldispühl
,
Yann Ponty
LNCS/LNBI
6577
, 2011, pp. 501-515
Nonparametric combinatorial sequence models
Fabian L. Wauthier
,
Michael I. Jordan
,
Nebojsa Jojic
LNCS/LNBI
6577
, 2011, pp. 516-530
Algorithms for MDC-based multi-locus phylogeny inference
Yun Yu
,
Tandy Warnow
,
Luay Nakhleh
LNCS/LNBI
6577
, 2011, pp. 531-545
Rich parameterization improves RNA structure prediction
Shay Zakov
,
Yoav Goldberg
,
Michael Elhadad
,
Michal Ziv-Ukelson
LNCS/LNBI
6577
, 2011, pp. 546-562
A Bayesian approach for determining protein side-chain rotamer conformations using unassigned NOE data
Jianyang Zeng
,
Kyle E. Roberts
,
Pei Zhou
,
Bruce R. Donald
LNCS/LNBI
6577
, 2011, pp. 563-578
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