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A hidden Markov model based scoring function for mass spectrometry database search
Yunhu Wan
,
Ting Chen
LNCS/LNBI
3500
, 2005, pp. 342-356
EigenMS: De novo analysis of peptide tandem mass spectra by spectral graph partitioning
Marshall Bern
,
David Goldberg
LNCS/LNBI
3500
, 2005, pp. 357-372
Biology as information
Eric Lander
LNCS/LNBI
3500
, 2005, pp. 373-373
Using multiple alignments to improve gene prediction
Samuel S. Gross
,
Michael R. Brent
LNCS/LNBI
3500
, 2005, pp. 374-388
Learning interpretable SVMs for biological sequence classification
S. Sonnenburg
,
G. Rätsch
,
C. Schäfer
LNCS/LNBI
3500
, 2005, pp. 389-407
Segmentation conditional random fields (SCRFs): A new approach for protein fold recognition
Yan Liu
,
Jaime Carbonell
,
Peter Weigele
,
Vanathi Gopalakrishnan
LNCS/LNBI
3500
, 2005, pp. 408-422
Rapid protein side-chain packing via tree decomposition
Jinbo Xu
LNCS/LNBI
3500
, 2005, pp. 423-439
Recognition of binding patterns common to a set of protein structures
Maxim Shatsky
,
Alexandra Shulman-Peleg
,
Ruth Nussinov
,
Haim J. Wolfson
LNCS/LNBI
3500
, 2005, pp. 440-455
Predicting protein-peptide binding affinity by learning peptide-peptide distance functions
Chen Yanover
,
Tomer Hertz
LNCS/LNBI
3500
, 2005, pp. 456-471
Amino acid sequence control of the folding of the parallel
\beta
-helix, the simplest
\beta
-sheet fold
Jonathan King
,
Cammie Haase-Pettingell
,
Ryan Simkovsky
,
Peter Weigele
LNCS/LNBI
3500
, 2005, pp. 472-473
A practical approach to significance assessment in alignment with gaps
Nicholas Chia
,
Ralf Bundschuh
LNCS/LNBI
3500
, 2005, pp. 474-488
Alignment of optical maps
Anton Valouev
,
Lei Li
,
Yu-Chi Liu
,
David C. Schwartz
,
Yi Yang
,
Yu Zhang
,
Michael S. Waterman
LNCS/LNBI
3500
, 2005, pp. 489-504
Engineering gene regulatory networks: A reductionist approach to systems biology
James J. Collins
LNCS/LNBI
3500
, 2005, pp. 505-505
Modeling the combinatorial functions of multiple transcription factors
Chen-Hsiang Yeang
,
Tommi Jaakkola
LNCS/LNBI
3500
, 2005, pp. 506-521
Predicting transcription factor binding sites using structural knowledge
Tommy Kaplan
,
Nir Friedman
,
Hanah Margalit
LNCS/LNBI
3500
, 2005, pp. 522-537
Motif discovery through predictive modeling of gene regulation
Manuel Middendorf
,
Anshul Kundaje
,
Mihir Shah
,
Yoav Freund
,
Chris H. Wiggins
,
Christina Leslie
LNCS/LNBI
3500
, 2005, pp. 538-552
HAPLOFREQ - Estimating haplotype frequencies efficiently
Eran Halperin
,
Elad Hazan
LNCS/LNBI
3500
, 2005, pp. 553-568
Improved recombination lower bounds for haplotype data
Vineet Bafna
,
Vikas Bansal
LNCS/LNBI
3500
, 2005, pp. 569-584
A linear-time algorithm for the Perfect Phylogeny Haplotyping (PPH) problem
Zhihong Ding
,
Vladimir Filkov
,
Dan Gusfield
LNCS/LNBI
3500
, 2005, pp. 585-600
Human genome sequence variation and the inherited basis of common disease
David Altshuler
LNCS/LNBI
3500
, 2005, pp. 601-602
Stability of rearrangement measures in the comparison of genome sequences
David Sankoff
,
Matthew Mazowita
LNCS/LNBI
3500
, 2005, pp. 603-614
On sorting by translocations
Anne Bergeron
,
Julia Mixtacki
,
Jens Stoye
LNCS/LNBI
3500
, 2005, pp. 615-629
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