@incollection{Atias-Sharan/10,
AUTHOR = {Atias, Nir and Sharan, Roded},
TITLE = {An algorithmic framework for predicting side-effects of drugs},
BOOKTITLE = {Proceedings of the 14th Annual International Conference on Research in Computational Molecular Biology, RECOMB'2010 (Lisbon, Portugal, April 25-28, 2010)},
SERIES = {LNCS/LNBI},
VOLUME = {6044},
PAGES = {1-14},
YEAR = {2010},
EDITOR = {Berger, Bonnie},
URL = {http://springerlink.metapress.com/content/l167l6r27l722473/fulltext.pdf},
PUBLISHER = {Springer-Verlag},
ADDRESS = {Berlin-Heidelberg},
}
@incollection{Ay-Kahveci/10,
AUTHOR = {Ay, Ferhat and Kahveci, Tamer},
TITLE = {SubMAP: Aligning metabolic pathways with subnetwork mappings},
BOOKTITLE = {Proceedings of the 14th Annual International Conference on Research in Computational Molecular Biology, RECOMB'2010 (Lisbon, Portugal, April 25-28, 2010)},
SERIES = {LNCS/LNBI},
VOLUME = {6044},
PAGES = {15-30},
YEAR = {2010},
EDITOR = {Berger, Bonnie},
URL = {http://springerlink.metapress.com/content/x3161m011l160896/fulltext.pdf},
PUBLISHER = {Springer-Verlag},
ADDRESS = {Berlin-Heidelberg},
}
@incollection{Bercovici-Geiger/10,
AUTHOR = {Bercovici, Sivan and Geiger, Dan},
TITLE = {Admixture aberration analysis: Application to mapping in admixed population using pooled DNA},
BOOKTITLE = {Proceedings of the 14th Annual International Conference on Research in Computational Molecular Biology, RECOMB'2010 (Lisbon, Portugal, April 25-28, 2010)},
SERIES = {LNCS/LNBI},
VOLUME = {6044},
PAGES = {31-49},
YEAR = {2010},
EDITOR = {Berger, Bonnie},
URL = {http://springerlink.metapress.com/content/56408x54kw4q2021/fulltext.pdf},
PUBLISHER = {Springer-Verlag},
ADDRESS = {Berlin-Heidelberg},
}
@incollection{Bercovici-Sharon-Pinter-Shlomi/10,
AUTHOR = {Bercovici, Sivan and Sharon, Itai and Pinter, Ron Y. and Shlomi, Tomer},
TITLE = {Pathway-based functional analysis of metagenomes},
BOOKTITLE = {Proceedings of the 14th Annual International Conference on Research in Computational Molecular Biology, RECOMB'2010 (Lisbon, Portugal, April 25-28, 2010)},
SERIES = {LNCS/LNBI},
VOLUME = {6044},
PAGES = {50-64},
YEAR = {2010},
EDITOR = {Berger, Bonnie},
URL = {http://springerlink.metapress.com/content/c3413j84m11235v2/fulltext.pdf},
PUBLISHER = {Springer-Verlag},
ADDRESS = {Berlin-Heidelberg},
}
@incollection{Caldas-Kaski/10,
AUTHOR = {Caldas, Jos{\'e} and Kaski, Samuel},
TITLE = {Hierarchical generative biclustering for microRNA expression analysis},
BOOKTITLE = {Proceedings of the 14th Annual International Conference on Research in Computational Molecular Biology, RECOMB'2010 (Lisbon, Portugal, April 25-28, 2010)},
SERIES = {LNCS/LNBI},
VOLUME = {6044},
PAGES = {65-79},
YEAR = {2010},
EDITOR = {Berger, Bonnie},
URL = {http://springerlink.metapress.com/content/44r2uhk438762121/fulltext.pdf},
PUBLISHER = {Springer-Verlag},
ADDRESS = {Berlin-Heidelberg},
}
@incollection{Chowdhury-Nibbe-Chance-Koyuturk/10,
AUTHOR = {Chowdhury, Salim A. and Nibbe, Rod K. and Chance, Mark R. and Koyut{\"u}rk, Mehmet},
TITLE = {Subnetwork state functions define dysregulated subnetworks in cancer},
BOOKTITLE = {Proceedings of the 14th Annual International Conference on Research in Computational Molecular Biology, RECOMB'2010 (Lisbon, Portugal, April 25-28, 2010)},
SERIES = {LNCS/LNBI},
VOLUME = {6044},
PAGES = {80-95},
YEAR = {2010},
EDITOR = {Berger, Bonnie},
URL = {http://springerlink.metapress.com/content/l78l1q2972412q18/fulltext.pdf},
PUBLISHER = {Springer-Verlag},
ADDRESS = {Berlin-Heidelberg},
}
@incollection{Claassen-Aebersold-Buhmann/10,
AUTHOR = {Claassen, Manfred and Aebersold, Ruedi and Buhmann, Joachim M.},
TITLE = {Proteome coverage prediction for integrated proteomics datasets},
BOOKTITLE = {Proceedings of the 14th Annual International Conference on Research in Computational Molecular Biology, RECOMB'2010 (Lisbon, Portugal, April 25-28, 2010)},
SERIES = {LNCS/LNBI},
VOLUME = {6044},
PAGES = {96-109},
YEAR = {2010},
EDITOR = {Berger, Bonnie},
URL = {http://springerlink.metapress.com/content/wh0m54821l215412/fulltext.pdf},
PUBLISHER = {Springer-Verlag},
ADDRESS = {Berlin-Heidelberg},
}
@incollection{Danford-Dowell-Agarwala-Grisafi-Fink-Gifford/10,
AUTHOR = {Danford, Timothy and Dowell, Robin and Agarwala, Sudeep and Grisafi, Paula and Fink, Gerald and Gifford, David},
TITLE = {Discovering regulatory overlapping RNA transcripts},
BOOKTITLE = {Proceedings of the 14th Annual International Conference on Research in Computational Molecular Biology, RECOMB'2010 (Lisbon, Portugal, April 25-28, 2010)},
SERIES = {LNCS/LNBI},
VOLUME = {6044},
PAGES = {110-122},
YEAR = {2010},
EDITOR = {Berger, Bonnie},
URL = {http://springerlink.metapress.com/content/n37v517555vr3131/fulltext.pdf},
PUBLISHER = {Springer-Verlag},
ADDRESS = {Berlin-Heidelberg},
}
@incollection{Daskalakis-Roch/10,
AUTHOR = {Daskalakis, Constantinos and Roch, Sebastien},
TITLE = {Alignment-free phylogenetic reconstruction},
BOOKTITLE = {Proceedings of the 14th Annual International Conference on Research in Computational Molecular Biology, RECOMB'2010 (Lisbon, Portugal, April 25-28, 2010)},
SERIES = {LNCS/LNBI},
VOLUME = {6044},
PAGES = {123-137},
YEAR = {2010},
EDITOR = {Berger, Bonnie},
URL = {http://springerlink.metapress.com/content/x75pvw4222072018/fulltext.pdf},
PUBLISHER = {Springer-Verlag},
ADDRESS = {Berlin-Heidelberg},
}
@incollection{Feng-Li-Jiang/10,
AUTHOR = {Feng, Jianxing and Li, Wei and Jiang, Tao},
TITLE = {Inference of isoforms from short sequence reads},
BOOKTITLE = {Proceedings of the 14th Annual International Conference on Research in Computational Molecular Biology, RECOMB'2010 (Lisbon, Portugal, April 25-28, 2010)},
SERIES = {LNCS/LNBI},
VOLUME = {6044},
PAGES = {138-157},
YEAR = {2010},
EDITOR = {Berger, Bonnie},
URL = {http://springerlink.metapress.com/content/f0107153186j35n3/fulltext.pdf},
PUBLISHER = {Springer-Verlag},
ADDRESS = {Berlin-Heidelberg},
PCOMMENT = {extended abstract},
}
@incollection{Halldorsson-Aguiar-Tarpine-Istrail/10,
AUTHOR = {Halld{\'o}rsson, Bjarni V. and Aguiar, Derek and Tarpine, Ryan and Istrail, Sorin},
TITLE = {The Clark phase-able sample size problem: Long-range phasing and loss of heterozygosity in GWAS},
BOOKTITLE = {Proceedings of the 14th Annual International Conference on Research in Computational Molecular Biology, RECOMB'2010 (Lisbon, Portugal, April 25-28, 2010)},
SERIES = {LNCS/LNBI},
VOLUME = {6044},
PAGES = {158-173},
YEAR = {2010},
EDITOR = {Berger, Bonnie},
URL = {http://springerlink.metapress.com/content/0550273026243l54/fulltext.pdf},
PUBLISHER = {Springer-Verlag},
ADDRESS = {Berlin-Heidelberg},
}
@incollection{Hirsch-Scholkopf-Habeck/10,
AUTHOR = {Hirsch, Michael and Sch{\"o}lkopf, Bernhard and Habeck, Michael},
TITLE = {A new algorithm for improving the resolution of cryo-EM density maps},
BOOKTITLE = {Proceedings of the 14th Annual International Conference on Research in Computational Molecular Biology, RECOMB'2010 (Lisbon, Portugal, April 25-28, 2010)},
SERIES = {LNCS/LNBI},
VOLUME = {6044},
PAGES = {174-188},
YEAR = {2010},
EDITOR = {Berger, Bonnie},
URL = {http://springerlink.metapress.com/content/8u05xn811j356832/fulltext.pdf},
PUBLISHER = {Springer-Verlag},
ADDRESS = {Berlin-Heidelberg},
}
@incollection{Jang-Gao-Li/10,
AUTHOR = {Jang, Richard and Gao, Xin and Li, Ming},
TITLE = {Towards automated structure-based NMR resonance assignment},
BOOKTITLE = {Proceedings of the 14th Annual International Conference on Research in Computational Molecular Biology, RECOMB'2010 (Lisbon, Portugal, April 25-28, 2010)},
SERIES = {LNCS/LNBI},
VOLUME = {6044},
PAGES = {189-207},
YEAR = {2010},
EDITOR = {Berger, Bonnie},
URL = {http://springerlink.metapress.com/content/g2762005w61177u9/fulltext.pdf},
PUBLISHER = {Springer-Verlag},
ADDRESS = {Berlin-Heidelberg},
}
@incollection{Jeong-Kim-Bandeira-Pevzner/10,
AUTHOR = {Jeong, Kyowon and Kim, Sangtae and Bandeira, Nuno and Pevzner, Pavel A.},
TITLE = {Gapped Spectral Dictionaries and their applications for database searches of tandem mass spectra},
BOOKTITLE = {Proceedings of the 14th Annual International Conference on Research in Computational Molecular Biology, RECOMB'2010 (Lisbon, Portugal, April 25-28, 2010)},
SERIES = {LNCS/LNBI},
VOLUME = {6044},
PAGES = {208-232},
YEAR = {2010},
EDITOR = {Berger, Bonnie},
URL = {http://springerlink.metapress.com/content/q504v0wxg5500943/fulltext.pdf},
PUBLISHER = {Springer-Verlag},
ADDRESS = {Berlin-Heidelberg},
}
@incollection{Kao-Song/10,
AUTHOR = {Kao, Wei-Chun and Song, Yun S.},
TITLE = {naiveBayesCall: An efficient model-based base-calling algorithm for high-throughput sequencing},
BOOKTITLE = {Proceedings of the 14th Annual International Conference on Research in Computational Molecular Biology, RECOMB'2010 (Lisbon, Portugal, April 25-28, 2010)},
SERIES = {LNCS/LNBI},
VOLUME = {6044},
PAGES = {233-247},
YEAR = {2010},
EDITOR = {Berger, Bonnie},
URL = {http://springerlink.metapress.com/content/h727345p22915122/fulltext.pdf},
PUBLISHER = {Springer-Verlag},
ADDRESS = {Berlin-Heidelberg},
}
@incollection{Kelley-Kingsford/10,
AUTHOR = {Kelley, David R. and Kingsford, Carl},
TITLE = {Extracting between-pathway models from E-MAP interactions using Expected Graph Compression},
BOOKTITLE = {Proceedings of the 14th Annual International Conference on Research in Computational Molecular Biology, RECOMB'2010 (Lisbon, Portugal, April 25-28, 2010)},
SERIES = {LNCS/LNBI},
VOLUME = {6044},
PAGES = {248-262},
YEAR = {2010},
EDITOR = {Berger, Bonnie},
URL = {http://springerlink.metapress.com/content/j62j5r5741n10222/fulltext.pdf},
PUBLISHER = {Springer-Verlag},
ADDRESS = {Berlin-Heidelberg},
}
@incollection{Kim-Wuchty-Przytycka/10,
AUTHOR = {Kim, Yoo-Ah and Wuchty, Stefan and Przytycka, Teresa M.},
TITLE = {Simultaneous identification of causal genes and dys-regulated pathways in complex diseases},
BOOKTITLE = {Proceedings of the 14th Annual International Conference on Research in Computational Molecular Biology, RECOMB'2010 (Lisbon, Portugal, April 25-28, 2010)},
SERIES = {LNCS/LNBI},
VOLUME = {6044},
PAGES = {263-280},
YEAR = {2010},
EDITOR = {Berger, Bonnie},
URL = {http://springerlink.metapress.com/content/t212v25n084033w5/fulltext.pdf},
PUBLISHER = {Springer-Verlag},
ADDRESS = {Berlin-Heidelberg},
}
@incollection{Koh-Hsu-Thiagarajan/10,
AUTHOR = {Koh, Geoffrey and Hsu, David and Thiagarajan, P.S.},
TITLE = {Incremental signaling pathway modeling by data integration},
BOOKTITLE = {Proceedings of the 14th Annual International Conference on Research in Computational Molecular Biology, RECOMB'2010 (Lisbon, Portugal, April 25-28, 2010)},
SERIES = {LNCS/LNBI},
VOLUME = {6044},
PAGES = {281-296},
YEAR = {2010},
EDITOR = {Berger, Bonnie},
URL = {http://springerlink.metapress.com/content/k3m24x4004p6w03l/fulltext.pdf},
PUBLISHER = {Springer-Verlag},
ADDRESS = {Berlin-Heidelberg},
}
@incollection{Kowalczyk-Bedo-Conway-Beresford-Smith/10,
AUTHOR = {Kowalczyk, Adam and Bedo, Justin and Conway, Thomas and Beresford-Smith, Bryan},
TITLE = {The poisson margin test for normalisation free significance analysis of NGS data},
BOOKTITLE = {Proceedings of the 14th Annual International Conference on Research in Computational Molecular Biology, RECOMB'2010 (Lisbon, Portugal, April 25-28, 2010)},
SERIES = {LNCS/LNBI},
VOLUME = {6044},
PAGES = {297-309},
YEAR = {2010},
EDITOR = {Berger, Bonnie},
URL = {http://springerlink.metapress.com/content/u866946m336663j0/fulltext.pdf},
PUBLISHER = {Springer-Verlag},
ADDRESS = {Berlin-Heidelberg},
}
@incollection{Kozanitis-Saunders-Kruglyak-Bafna-Varghese/10,
AUTHOR = {Kozanitis, Christos and Saunders, Chris and Kruglyak, Semyon and Bafna, Vineet and Varghese, George},
TITLE = {Compressing genomic sequence fragments using {\sc SlimGene}},
BOOKTITLE = {Proceedings of the 14th Annual International Conference on Research in Computational Molecular Biology, RECOMB'2010 (Lisbon, Portugal, April 25-28, 2010)},
SERIES = {LNCS/LNBI},
VOLUME = {6044},
PAGES = {310-324},
YEAR = {2010},
EDITOR = {Berger, Bonnie},
URL = {http://springerlink.metapress.com/content/26x76725u8348152/fulltext.pdf},
PUBLISHER = {Springer-Verlag},
ADDRESS = {Berlin-Heidelberg},
}
@incollection{Lam-Langley-Song/10,
AUTHOR = {Lam, Fumei and Langley, Charles H. and Song, Yun S.},
TITLE = {On the genealogy of asexual diploids},
BOOKTITLE = {Proceedings of the 14th Annual International Conference on Research in Computational Molecular Biology, RECOMB'2010 (Lisbon, Portugal, April 25-28, 2010)},
SERIES = {LNCS/LNBI},
VOLUME = {6044},
PAGES = {325-340},
YEAR = {2010},
EDITOR = {Berger, Bonnie},
URL = {http://springerlink.metapress.com/content/ak78t6u18x8n38hg/fulltext.pdf},
PUBLISHER = {Springer-Verlag},
ADDRESS = {Berlin-Heidelberg},
}
@incollection{Laserson-Jojic-Koller/10,
AUTHOR = {Laserson, Jonathan and Jojic, Vladimir and Koller, Daphne},
TITLE = {Genovo: De novo assembly for metagenomes},
BOOKTITLE = {Proceedings of the 14th Annual International Conference on Research in Computational Molecular Biology, RECOMB'2010 (Lisbon, Portugal, April 25-28, 2010)},
SERIES = {LNCS/LNBI},
VOLUME = {6044},
PAGES = {341-356},
YEAR = {2010},
EDITOR = {Berger, Bonnie},
URL = {http://springerlink.metapress.com/content/bp66353827t15464/fulltext.pdf},
PUBLISHER = {Springer-Verlag},
ADDRESS = {Berlin-Heidelberg},
}
@incollection{Lee-Xing-Brudno/10,
AUTHOR = {Lee, Seunghak and Xing, Eric and Brudno, Michael},
TITLE = {MoGUL: Detecting common insertions and deletions in a population},
BOOKTITLE = {Proceedings of the 14th Annual International Conference on Research in Computational Molecular Biology, RECOMB'2010 (Lisbon, Portugal, April 25-28, 2010)},
SERIES = {LNCS/LNBI},
VOLUME = {6044},
PAGES = {357-368},
YEAR = {2010},
EDITOR = {Berger, Bonnie},
URL = {http://springerlink.metapress.com/content/32w7184r7057461w/fulltext.pdf},
PUBLISHER = {Springer-Verlag},
ADDRESS = {Berlin-Heidelberg},
}
@incollection{Misra-Blelloch-Ravi-Schwartz/10,
AUTHOR = {Misra, Navodit and Blelloch, Guy and Ravi, R. and Schwartz, Russell},
TITLE = {Generalized Buneman pruning for inferring the most parsimonious multi-state phylogeny},
BOOKTITLE = {Proceedings of the 14th Annual International Conference on Research in Computational Molecular Biology, RECOMB'2010 (Lisbon, Portugal, April 25-28, 2010)},
SERIES = {LNCS/LNBI},
VOLUME = {6044},
PAGES = {369-383},
YEAR = {2010},
EDITOR = {Berger, Bonnie},
URL = {http://springerlink.metapress.com/content/c7u2g48277t65u02/fulltext.pdf},
PUBLISHER = {Springer-Verlag},
ADDRESS = {Berlin-Heidelberg},
}
@incollection{Noe-Girdea-Kucherov/10,
AUTHOR = {No{\'e}, Laurent and G{\^{i}}rdea, Marta and Kucherov, Gregory},
TITLE = {Seed design framework for mapping SOLiD reads},
BOOKTITLE = {Proceedings of the 14th Annual International Conference on Research in Computational Molecular Biology, RECOMB'2010 (Lisbon, Portugal, April 25-28, 2010)},
SERIES = {LNCS/LNBI},
VOLUME = {6044},
PAGES = {384-396},
YEAR = {2010},
EDITOR = {Berger, Bonnie},
URL = {http://springerlink.metapress.com/content/41535x341gu34131/fulltext.pdf},
PUBLISHER = {Springer-Verlag},
ADDRESS = {Berlin-Heidelberg},
}
@incollection{Pasaniuc-Zaitlen-Halperin/10,
AUTHOR = {Pa{\c{s}}aniuc, Bogdan and Zaitlen, Noah and Halperin, Eran},
TITLE = {Accurate estimation of expression levels of homologous genes in RNA-seq experiments},
BOOKTITLE = {Proceedings of the 14th Annual International Conference on Research in Computational Molecular Biology, RECOMB'2010 (Lisbon, Portugal, April 25-28, 2010)},
SERIES = {LNCS/LNBI},
VOLUME = {6044},
PAGES = {397-409},
YEAR = {2010},
EDITOR = {Berger, Bonnie},
URL = {http://springerlink.metapress.com/content/5pmp3w5u61758382/fulltext.pdf},
PUBLISHER = {Springer-Verlag},
ADDRESS = {Berlin-Heidelberg},
}
@incollection{Paten-Diekhans-Earl-St_John-Ma-Suh-Haussler/10,
AUTHOR = {Paten, Benedict and Diekhans, Mark and Earl, Dent and St. John, John and Ma, Jian and Suh, Bernard and Haussler, David},
TITLE = {Cactus graphs for genome comparisons},
BOOKTITLE = {Proceedings of the 14th Annual International Conference on Research in Computational Molecular Biology, RECOMB'2010 (Lisbon, Portugal, April 25-28, 2010)},
SERIES = {LNCS/LNBI},
VOLUME = {6044},
PAGES = {410-425},
YEAR = {2010},
EDITOR = {Berger, Bonnie},
URL = {http://springerlink.metapress.com/content/l130m480x143j8m5/fulltext.pdf},
PUBLISHER = {Springer-Verlag},
ADDRESS = {Berlin-Heidelberg},
}
@incollection{Peng-Leung-Yiu-Chin/10,
AUTHOR = {Peng, Yu and Leung, Henry C.M. and Yiu, S.M. and Chin, Francis Y.L.},
TITLE = {IDBA --- A practical iterative de Bruijn graph de novo assembler},
BOOKTITLE = {Proceedings of the 14th Annual International Conference on Research in Computational Molecular Biology, RECOMB'2010 (Lisbon, Portugal, April 25-28, 2010)},
SERIES = {LNCS/LNBI},
VOLUME = {6044},
PAGES = {426-440},
YEAR = {2010},
EDITOR = {Berger, Bonnie},
URL = {http://springerlink.metapress.com/content/622866948lh233g7/fulltext.pdf},
PUBLISHER = {Springer-Verlag},
ADDRESS = {Berlin-Heidelberg},
}
@incollection{Reynolds-Weng-Bilmes-Noble/10,
AUTHOR = {Reynolds, Sheila M. and Weng, Zhiping and Bilmes, Jeff A. and Noble, William Stafford},
TITLE = {Predicting nucleosome positioning using multiple evidence tracks},
BOOKTITLE = {Proceedings of the 14th Annual International Conference on Research in Computational Molecular Biology, RECOMB'2010 (Lisbon, Portugal, April 25-28, 2010)},
SERIES = {LNCS/LNBI},
VOLUME = {6044},
PAGES = {441-455},
YEAR = {2010},
EDITOR = {Berger, Bonnie},
URL = {http://springerlink.metapress.com/content/ek182gu762576713/fulltext.pdf},
PUBLISHER = {Springer-Verlag},
ADDRESS = {Berlin-Heidelberg},
}
@incollection{Saha-Hoch-Khuller-Raschid-Zhang/10,
AUTHOR = {Saha, Barna and Hoch, Allison and Khuller, Samir and Raschid, Louiqa and Zhang, Xiao-Ning},
TITLE = {Dense subgraphs with restrictions and applications to gene annotation graphs},
BOOKTITLE = {Proceedings of the 14th Annual International Conference on Research in Computational Molecular Biology, RECOMB'2010 (Lisbon, Portugal, April 25-28, 2010)},
SERIES = {LNCS/LNBI},
VOLUME = {6044},
PAGES = {456-472},
YEAR = {2010},
EDITOR = {Berger, Bonnie},
URL = {http://springerlink.metapress.com/content/f8k6615356w53212/fulltext.pdf},
PUBLISHER = {Springer-Verlag},
ADDRESS = {Berlin-Heidelberg},
}
@incollection{Salari-Mohl-Will-Sahinalp-Backofen/10,
AUTHOR = {Salari, Raheleh and M{\"o}hl, Mathias and Will, Sebastian and Sahinalp, S. Cenk and Backofen, Rolf},
TITLE = {Time and space efficient RNA-RNA interaction prediction via sparse folding},
BOOKTITLE = {Proceedings of the 14th Annual International Conference on Research in Computational Molecular Biology, RECOMB'2010 (Lisbon, Portugal, April 25-28, 2010)},
SERIES = {LNCS/LNBI},
VOLUME = {6044},
PAGES = {473-490},
YEAR = {2010},
EDITOR = {Berger, Bonnie},
URL = {http://springerlink.metapress.com/content/yu41l3486779325n/fulltext.pdf},
PUBLISHER = {Springer-Verlag},
ADDRESS = {Berlin-Heidelberg},
}
@incollection{Setty-Gusev-Peer/10,
AUTHOR = {Setty, Manu N. and Gusev, Alexander and Pe'er, Itsik},
TITLE = {HLA type inference via haplotypes identical by descent},
BOOKTITLE = {Proceedings of the 14th Annual International Conference on Research in Computational Molecular Biology, RECOMB'2010 (Lisbon, Portugal, April 25-28, 2010)},
SERIES = {LNCS/LNBI},
VOLUME = {6044},
PAGES = {491-505},
YEAR = {2010},
EDITOR = {Berger, Bonnie},
URL = {http://springerlink.metapress.com/content/8804174663313g21/fulltext.pdf},
PUBLISHER = {Springer-Verlag},
ADDRESS = {Berlin-Heidelberg},
}
@incollection{Vandin-Upfal-Raphael/10,
AUTHOR = {Vandin, Fabio and Upfal, Eli and Raphael, Benjamin J.},
TITLE = {Algorithms for detecting significantly mutated pathways in cancer},
BOOKTITLE = {Proceedings of the 14th Annual International Conference on Research in Computational Molecular Biology, RECOMB'2010 (Lisbon, Portugal, April 25-28, 2010)},
SERIES = {LNCS/LNBI},
VOLUME = {6044},
PAGES = {506-521},
YEAR = {2010},
EDITOR = {Berger, Bonnie},
URL = {http://springerlink.metapress.com/content/g432216562962u18/fulltext.pdf},
PUBLISHER = {Springer-Verlag},
ADDRESS = {Berlin-Heidelberg},
}
@incollection{Widmer-Leiva-Altun-Ratsch/10,
AUTHOR = {Widmer, Christian and Leiva, Jose and Altun, Yasemin and R{\"a}tsch, Gunnar},
TITLE = {Leveraging sequence classification by taxonomy-based multitask learning},
BOOKTITLE = {Proceedings of the 14th Annual International Conference on Research in Computational Molecular Biology, RECOMB'2010 (Lisbon, Portugal, April 25-28, 2010)},
SERIES = {LNCS/LNBI},
VOLUME = {6044},
PAGES = {522-534},
YEAR = {2010},
EDITOR = {Berger, Bonnie},
URL = {http://springerlink.metapress.com/content/173xx2220r065g53/fulltext.pdf},
PUBLISHER = {Springer-Verlag},
ADDRESS = {Berlin-Heidelberg},
}
@incollection{Wu-Ye/10,
AUTHOR = {Wu, Yu-Wei and Ye, Yuzhen},
TITLE = {A novel abundance-based algorithm for binning metagenomic sequences using $l$-tuples},
BOOKTITLE = {Proceedings of the 14th Annual International Conference on Research in Computational Molecular Biology, RECOMB'2010 (Lisbon, Portugal, April 25-28, 2010)},
SERIES = {LNCS/LNBI},
VOLUME = {6044},
PAGES = {535-549},
YEAR = {2010},
EDITOR = {Berger, Bonnie},
URL = {http://springerlink.metapress.com/content/201300170l185173/fulltext.pdf},
PUBLISHER = {Springer-Verlag},
ADDRESS = {Berlin-Heidelberg},
}
@incollection{Zeng-Zhou-Donald/10,
AUTHOR = {Zeng, Jianyang and Zhou, Pei and Donald, Bruce Randall},
TITLE = {A Markov random field framework for protein side-chain resonance assignment},
BOOKTITLE = {Proceedings of the 14th Annual International Conference on Research in Computational Molecular Biology, RECOMB'2010 (Lisbon, Portugal, April 25-28, 2010)},
SERIES = {LNCS/LNBI},
VOLUME = {6044},
PAGES = {550-570},
YEAR = {2010},
EDITOR = {Berger, Bonnie},
URL = {http://springerlink.metapress.com/content/j7t87r18132v749r/fulltext.pdf},
PUBLISHER = {Springer-Verlag},
ADDRESS = {Berlin-Heidelberg},
}
@incollection{Chor-Horn-Goldman-Levy-Massingham/10,
AUTHOR = {Chor, Benny and Horn, David and Goldman, Nick and Levy, Yaron and Massingham, Tim},
TITLE = {Genomic DNA $k$-mer spectra: Models and modalities},
BOOKTITLE = {Proceedings of the 14th Annual International Conference on Research in Computational Molecular Biology, RECOMB'2010 (Lisbon, Portugal, April 25-28, 2010)},
SERIES = {LNCS/LNBI},
VOLUME = {6044},
PAGES = {571-571},
YEAR = {2010},
EDITOR = {Berger, Bonnie},
URL = {http://springerlink.metapress.com/content/6u80gw8rl7736450/fulltext.pdf},
PUBLISHER = {Springer-Verlag},
ADDRESS = {Berlin-Heidelberg},
}
@incollection{Goldstein-dos_Reis-Tamuri-Hay/10,
AUTHOR = {Goldstein, Richard and dos Reis, Mario and Tamuri, Asif and Hay, Alan},
TITLE = {Deciphering the swine-flu pandemics of 1918 and 2009},
BOOKTITLE = {Proceedings of the 14th Annual International Conference on Research in Computational Molecular Biology, RECOMB'2010 (Lisbon, Portugal, April 25-28, 2010)},
SERIES = {LNCS/LNBI},
VOLUME = {6044},
PAGES = {572-573},
YEAR = {2010},
EDITOR = {Berger, Bonnie},
URL = {http://springerlink.metapress.com/content/t485lj6pu7541705/fulltext.pdf},
PUBLISHER = {Springer-Verlag},
ADDRESS = {Berlin-Heidelberg},
}
@incollection{Gordan-Hartemink-Bulyk/10,
AUTHOR = {Gord{\^a}n, Raluca and Hartemink, Alexander J. and Bulyk, Martha L.},
TITLE = {Distinguishing direct versus indirect transcription factor-DNA interactions},
BOOKTITLE = {Proceedings of the 14th Annual International Conference on Research in Computational Molecular Biology, RECOMB'2010 (Lisbon, Portugal, April 25-28, 2010)},
SERIES = {LNCS/LNBI},
VOLUME = {6044},
PAGES = {574-574},
YEAR = {2010},
EDITOR = {Berger, Bonnie},
URL = {http://springerlink.metapress.com/content/nt0q870591r08034/fulltext.pdf},
PUBLISHER = {Springer-Verlag},
ADDRESS = {Berlin-Heidelberg},
}
@incollection{Benazet-Bischofberger-Tiecke-Gonalves-Martin-Zuniga-Naef-Zeller/10,
AUTHOR = {Benazet, Jean-Denis and Bischofberger, Mirko and Tiecke, Eva and Gonalves, Alexandre and Martin, James F. and Zuniga, and Aime and Naef, Felix and Zeller, Rolf},
TITLE = {A self-regulatory system of interlinked signaling feedback loops controls mouse limb patterning},
BOOKTITLE = {Proceedings of the 14th Annual International Conference on Research in Computational Molecular Biology, RECOMB'2010 (Lisbon, Portugal, April 25-28, 2010)},
SERIES = {LNCS/LNBI},
VOLUME = {6044},
PAGES = {575-576},
YEAR = {2010},
EDITOR = {Berger, Bonnie},
URL = {http://springerlink.metapress.com/content/k082g5w144866301/fulltext.pdf},
PUBLISHER = {Springer-Verlag},
ADDRESS = {Berlin-Heidelberg},
}
@incollection{Pyne-Hu-Wang-Rossin-Lin-Maier-Baecher-Allan-McLachlan-Tamayo-Hafler-De_Jager-Mesirov/10,
AUTHOR = {Pyne, Saumyadipta and Hu, Xinli and Wang, Kui and Rossin, Elizabeth and Lin, Tsung-I and Maier, Lisa and Baecher-Allan, Clare and McLachlan, Geoffrey and Tamayo, Pablo and Hafler, David and De Jager, Philip and Mesirov, Jill},
TITLE = {Automated high-dimensional flow cytometric data analysis},
BOOKTITLE = {Proceedings of the 14th Annual International Conference on Research in Computational Molecular Biology, RECOMB'2010 (Lisbon, Portugal, April 25-28, 2010)},
SERIES = {LNCS/LNBI},
VOLUME = {6044},
PAGES = {577-577},
YEAR = {2010},
EDITOR = {Berger, Bonnie},
URL = {http://springerlink.metapress.com/content/m478w6447p46533l/fulltext.pdf},
PUBLISHER = {Springer-Verlag},
ADDRESS = {Berlin-Heidelberg},
}
@incollection{Halperin-Linhart-Ulitsky-Shamir/10,
AUTHOR = {Halperin, Yonit and Linhart, Chaim and Ulitsky, Igor and Shamir, Ron},
TITLE = {Discovering transcriptional modules by combined analysis of expression profiles and regulatory sequences},
BOOKTITLE = {Proceedings of the 14th Annual International Conference on Research in Computational Molecular Biology, RECOMB'2010 (Lisbon, Portugal, April 25-28, 2010)},
SERIES = {LNCS/LNBI},
VOLUME = {6044},
PAGES = {578-579},
YEAR = {2010},
EDITOR = {Berger, Bonnie},
URL = {http://springerlink.metapress.com/content/l3114g591842t231/fulltext.pdf},
PUBLISHER = {Springer-Verlag},
ADDRESS = {Berlin-Heidelberg},
}