@incollection{Alekseyev/07,
AUTHOR = {Alekseyev, Max A.},
TITLE = {Multi-break rearrangements: From circular to linear genomes},
BOOKTITLE = {Proceedings of the ...},
SERIES = {LNCS/LNBI},
VOLUME = {4751},
PAGES = {1-15},
YEAR = {2007},
EDITOR = {Tesler, Glenn and Durand, Dannie},
URL = {http://springerlink.metapress.com/content/5806r8tt00n2l161/fulltext.pdf},
PUBLISHER = {Springer-Verlag},
ADDRESS = {Berlin-Heidelberg},
}
@incollection{Angibaud-Fertin-Rusu-Thevenin-Vialette/07,
AUTHOR = {Angibaud, S{\'e}bastien and Fertin, Guillaume and Rusu, Irena and Th{\'e}venin, Annelyse and Vialette, St{\'e}phane},
TITLE = {A pseudo-Boolean programming approach for computing the breakpoint distance between two genomes with duplicate genes},
BOOKTITLE = {Proceedings of the International Workshop on Comparative Genomics, RECOMB-CG'2007 (San Diego, CA, USA, September 16-18, 2007)},
SERIES = {LNCS/LNBI},
VOLUME = {4751},
PAGES = {16-29},
YEAR = {2007},
EDITOR = {Tesler, Glenn and Durand, Dannie},
URL = {http://springerlink.metapress.com/content/v974512qnq683757/fulltext.pdf},
PUBLISHER = {Springer-Verlag},
ADDRESS = {Berlin-Heidelberg},
}
@incollection{Arndt-Tang/07,
AUTHOR = {Arndt, William and Tang, Jijun},
TITLE = {Improving inversion median computation using commuting reversals and cycle information},
BOOKTITLE = {Proceedings of the International Workshop on Comparative Genomics, RECOMB-CG'2007 (San Diego, CA, USA, September 16-18, 2007)},
SERIES = {LNCS/LNBI},
VOLUME = {4751},
PAGES = {30-44},
YEAR = {2007},
EDITOR = {Tesler, Glenn and Durand, Dannie},
URL = {http://springerlink.metapress.com/content/d1r77w1654740307/fulltext.pdf},
PUBLISHER = {Springer-Verlag},
ADDRESS = {Berlin-Heidelberg},
}
@incollection{Chauve-Doyon-El-Mabrouk/07,
AUTHOR = {Chauve, Cedric and Doyon, Jean-Philippe and El-Mabrouk, Nadia},
TITLE = {Inferring a duplication, speciation and loss history from a gene tree},
BOOKTITLE = {Proceedings of the International Workshop on Comparative Genomics, RECOMB-CG'2007 (San Diego, CA, USA, September 16-18, 2007)},
SERIES = {LNCS/LNBI},
VOLUME = {4751},
PAGES = {45-57},
YEAR = {2007},
EDITOR = {Tesler, Glenn and Durand, Dannie},
URL = {http://springerlink.metapress.com/content/w812601622v37p60/fulltext.pdf},
PUBLISHER = {Springer-Verlag},
ADDRESS = {Berlin-Heidelberg},
PCOMMENT = {extended abstract},
}
@incollection{Gog-Bader/07,
AUTHOR = {Gog, Simon and Bader, Martin},
TITLE = {How to achieve an equivalent simple permutation in linear time},
BOOKTITLE = {Proceedings of the International Workshop on Comparative Genomics, RECOMB-CG'2007 (San Diego, CA, USA, September 16-18, 2007)},
SERIES = {LNCS/LNBI},
VOLUME = {4751},
PAGES = {58-68},
YEAR = {2007},
EDITOR = {Tesler, Glenn and Durand, Dannie},
URL = {http://springerlink.metapress.com/content/m367463x4q122141/fulltext.pdf},
PUBLISHER = {Springer-Verlag},
ADDRESS = {Berlin-Heidelberg},
}
@incollection{Goodman-Ollikainen-Sholley/07,
AUTHOR = {Goodman, Daniel and Ollikainen, Noah and Sholley, Chris},
TITLE = {Baculovirus phylogeny based on genome rearrangements},
BOOKTITLE = {Proceedings of the International Workshop on Comparative Genomics, RECOMB-CG'2007 (San Diego, CA, USA, September 16-18, 2007)},
SERIES = {LNCS/LNBI},
VOLUME = {4751},
PAGES = {69-82},
YEAR = {2007},
EDITOR = {Tesler, Glenn and Durand, Dannie},
URL = {http://springerlink.metapress.com/content/62660124881k0055/fulltext.pdf},
PUBLISHER = {Springer-Verlag},
ADDRESS = {Berlin-Heidelberg},
}
@incollection{Guo-Schuurmans/07,
AUTHOR = {Guo, Yuhong and Schuurmans, Dale},
TITLE = {Learning gene regulatory networks via globally regularized risk minimization},
BOOKTITLE = {Proceedings of the International Workshop on Comparative Genomics, RECOMB-CG'2007 (San Diego, CA, USA, September 16-18, 2007)},
SERIES = {LNCS/LNBI},
VOLUME = {4751},
PAGES = {83-95},
YEAR = {2007},
EDITOR = {Tesler, Glenn and Durand, Dannie},
URL = {http://springerlink.metapress.com/content/e182166432143064/fulltext.pdf},
PUBLISHER = {Springer-Verlag},
ADDRESS = {Berlin-Heidelberg},
}
@incollection{Lajoie-Bertrand-El-Mabrouk/07,
AUTHOR = {Lajoie, Mathieu and Bertrand, Denis and El-Mabrouk, Nadia},
TITLE = {Evolution of tandemly arrayed genes in multiple species},
BOOKTITLE = {Proceedings of the International Workshop on Comparative Genomics, RECOMB-CG'2007 (San Diego, CA, USA, September 16-18, 2007)},
SERIES = {LNCS/LNBI},
VOLUME = {4751},
PAGES = {96-109},
YEAR = {2007},
EDITOR = {Tesler, Glenn and Durand, Dannie},
URL = {http://springerlink.metapress.com/content/nw867504tq860872/fulltext.pdf},
PUBLISHER = {Springer-Verlag},
ADDRESS = {Berlin-Heidelberg},
}
@incollection{Li-Ma-Zhang/07,
AUTHOR = {Li, Guoliang and Ma, Jian and Zhang, Louxin},
TITLE = {Selecting genomes for reconstruction of ancestral genomes},
BOOKTITLE = {Proceedings of the International Workshop on Comparative Genomics, RECOMB-CG'2007 (San Diego, CA, USA, September 16-18, 2007)},
SERIES = {LNCS/LNBI},
VOLUME = {4751},
PAGES = {110-121},
YEAR = {2007},
EDITOR = {Tesler, Glenn and Durand, Dannie},
URL = {http://springerlink.metapress.com/content/x200433110468l22/fulltext.pdf},
PUBLISHER = {Springer-Verlag},
ADDRESS = {Berlin-Heidelberg},
}
@incollection{Ma-Ratan-Zhang-Miller-Haussler/07,
AUTHOR = {Ma, Jian and Ratan, Aakrosh and Zhang, Louxin and Miller, Webb and Haussler, David},
TITLE = {A heuristic algorithm for reconstructing ancestral gene orders with duplications},
BOOKTITLE = {Proceedings of the International Workshop on Comparative Genomics, RECOMB-CG'2007 (San Diego, CA, USA, September 16-18, 2007)},
SERIES = {LNCS/LNBI},
VOLUME = {4751},
PAGES = {122-135},
YEAR = {2007},
EDITOR = {Tesler, Glenn and Durand, Dannie},
URL = {http://springerlink.metapress.com/content/u531m71r72464p45/fulltext.pdf},
PUBLISHER = {Springer-Verlag},
ADDRESS = {Berlin-Heidelberg},
}
@incollection{Xia-Sharakhova-Sharakhov/07,
AUTHOR = {Xia, Ai and Sharakhova, Maria V. and Sharakhov, Igor V.},
TITLE = {Reconstructing an inversion history in the Anopheles gambiae complex},
BOOKTITLE = {Proceedings of the International Workshop on Comparative Genomics, RECOMB-CG'2007 (San Diego, CA, USA, September 16-18, 2007)},
SERIES = {LNCS/LNBI},
VOLUME = {4751},
PAGES = {136-148},
YEAR = {2007},
EDITOR = {Tesler, Glenn and Durand, Dannie},
URL = {http://springerlink.metapress.com/content/k463p4n4334g6110/fulltext.pdf},
PUBLISHER = {Springer-Verlag},
ADDRESS = {Berlin-Heidelberg},
}
@incollection{Zhao-Bourque/07,
AUTHOR = {Zhao, Hao and Bourque, Guillaume},
TITLE = {Recovering true rearrangement events on phylogenetic trees},
BOOKTITLE = {Proceedings of the International Workshop on Comparative Genomics, RECOMB-CG'2007 (San Diego, CA, USA, September 16-18, 2007)},
SERIES = {LNCS/LNBI},
VOLUME = {4751},
PAGES = {149-161},
YEAR = {2007},
EDITOR = {Tesler, Glenn and Durand, Dannie},
URL = {http://springerlink.metapress.com/content/4530366v4867j034/fulltext.pdf},
PUBLISHER = {Springer-Verlag},
ADDRESS = {Berlin-Heidelberg},
}
@incollection{Zheng-Zhu-Sankoff/07,
AUTHOR = {Zheng, Chunfang and Zhu, Qian and Sankoff, David},
TITLE = {Parts of the problem of polyploids in rearrangement phylogeny},
BOOKTITLE = {Proceedings of the International Workshop on Comparative Genomics, RECOMB-CG'2007 (San Diego, CA, USA, September 16-18, 2007)},
SERIES = {LNCS/LNBI},
VOLUME = {4751},
PAGES = {162-176},
YEAR = {2007},
EDITOR = {Tesler, Glenn and Durand, Dannie},
URL = {http://springerlink.metapress.com/content/c8hj7l3084137024/fulltext.pdf},
PUBLISHER = {Springer-Verlag},
ADDRESS = {Berlin-Heidelberg},
}
@incollection{Zheng-Rogozin-Koonin-Przytycka/07,
AUTHOR = {Zheng, Jie and Rogozin, Igor B. and Koonin, Eugene V. and Przytycka, Teresa M.},
TITLE = {A rigorous analysis of the pattern of intron conservation supports the Coelomata clade of animals},
BOOKTITLE = {Proceedings of the International Workshop on Comparative Genomics, RECOMB-CG'2007 (San Diego, CA, USA, September 16-18, 2007)},
SERIES = {LNCS/LNBI},
VOLUME = {4751},
PAGES = {177-191},
YEAR = {2007},
EDITOR = {Tesler, Glenn and Durand, Dannie},
URL = {http://springerlink.metapress.com/content/l7710804w3861163/fulltext.pdf},
PUBLISHER = {Springer-Verlag},
ADDRESS = {Berlin-Heidelberg},
}