@incollection{Hormozdiari-Berenbrink-Przulj-Sahinalp/07,
AUTHOR = {Hormozdiari, Fereydoun and Berenbrink, Petra and Pr{\v{z}}ulj, Nata{\v{s}}a and Sahinalp, Cenk},
TITLE = {Not all scale free networks are born equal: The role of the seed graph in PPI network emulation},
BOOKTITLE = {Proceedings of the Joint RECOMB 2006 Satellite Workshops on Systems Biology and on Computational Proteomics (San Diego, CA, USA, December 1-3, 2006)},
SERIES = {LNCS/LNBI},
VOLUME = {4532},
PAGES = {1-13},
YEAR = {2007},
EDITOR = {Ideker, Trey and Bafna, Vineet},
URL = {http://springerlink.metapress.com/content/y00515t76r847272/fulltext.pdf},
PUBLISHER = {Springer-Verlag},
ADDRESS = {Berlin-Heidelberg},
}
@incollection{Huang-Zhang-Roth-Bader/07,
AUTHOR = {Huang, Hailiang and Zhang, Lan V. and Roth, Frederick P. and Bader, Joel S.},
TITLE = {Probabilistic paths for protein complex inference},
BOOKTITLE = {Proceedings of the Joint RECOMB 2006 Satellite Workshops on Systems Biology and on Computational Proteomics (San Diego, CA, USA, December 1-3, 2006)},
SERIES = {LNCS/LNBI},
VOLUME = {4532},
PAGES = {14-28},
YEAR = {2007},
EDITOR = {Ideker, Trey and Bafna, Vineet},
URL = {http://springerlink.metapress.com/content/pr2t604l85147861/fulltext.pdf},
PUBLISHER = {Springer-Verlag},
ADDRESS = {Berlin-Heidelberg},
}
@incollection{Kaltenbach-Bocker-Rahmann/07,
AUTHOR = {Kaltenbach, Hans-Michael and B{\"o}cker, Sebastian and Rahmann, Sven},
TITLE = {Markov additive chains and applications to fragment statistics for peptide mass fingerprinting},
BOOKTITLE = {Proceedings of the Joint RECOMB 2006 Satellite Workshops on Systems Biology and on Computational Proteomics (San Diego, CA, USA, December 1-3, 2006)},
SERIES = {LNCS/LNBI},
VOLUME = {4532},
PAGES = {29-41},
YEAR = {2007},
EDITOR = {Ideker, Trey and Bafna, Vineet},
URL = {http://springerlink.metapress.com/content/01605n285x656248/fulltext.pdf},
PUBLISHER = {Springer-Verlag},
ADDRESS = {Berlin-Heidelberg},
}
@incollection{Lefebvre-Lim-Basso-Favera-Califano/07,
AUTHOR = {Lefebvre, Celine and Lim, Wei Keat and Basso, Katia and Favera, Riccardo Dalla and Califano, Andrea},
TITLE = {A context-specific network of protein-DNA and protein-protein interactions reveals new regulatory motifs in human B cells},
BOOKTITLE = {Proceedings of the Joint RECOMB 2006 Satellite Workshops on Systems Biology and on Computational Proteomics (San Diego, CA, USA, December 1-3, 2006)},
SERIES = {LNCS/LNBI},
VOLUME = {4532},
PAGES = {42-56},
YEAR = {2007},
EDITOR = {Ideker, Trey and Bafna, Vineet},
URL = {http://springerlink.metapress.com/content/83440181j3x1n144/fulltext.pdf},
PUBLISHER = {Springer-Verlag},
ADDRESS = {Berlin-Heidelberg},
}
@incollection{Ruan-Zhang/07,
AUTHOR = {Ruan, Jianhua and Zhang, Weixiong},
TITLE = {Identification and evaluation of functional modules in gene co-expression networks},
BOOKTITLE = {Proceedings of the Joint RECOMB 2006 Satellite Workshops on Systems Biology and on Computational Proteomics (San Diego, CA, USA, December 1-3, 2006)},
SERIES = {LNCS/LNBI},
VOLUME = {4532},
PAGES = {57-76},
YEAR = {2007},
EDITOR = {Ideker, Trey and Bafna, Vineet},
URL = {http://springerlink.metapress.com/content/gv784n60qx30620w/fulltext.pdf},
PUBLISHER = {Springer-Verlag},
ADDRESS = {Berlin-Heidelberg},
}
@incollection{Song-Liu/07,
AUTHOR = {Song, Mingzhou (Joe) and Liu, Z. Lewis},
TITLE = {A linear discrete dynamic system model for temporal gene interaction and regulatory network influence in response to bioethanol conversion inhibitor HMF for ethanologenic yeast},
BOOKTITLE = {Proceedings of the Joint RECOMB 2006 Satellite Workshops on Systems Biology and on Computational Proteomics (San Diego, CA, USA, December 1-3, 2006)},
SERIES = {LNCS/LNBI},
VOLUME = {4532},
PAGES = {77-95},
YEAR = {2007},
EDITOR = {Ideker, Trey and Bafna, Vineet},
URL = {http://springerlink.metapress.com/content/q247r247r28nkl86/fulltext.pdf},
PUBLISHER = {Springer-Verlag},
ADDRESS = {Berlin-Heidelberg},
}
@incollection{Wu-Mechref-Klouckova-Novotny-Tang/07,
AUTHOR = {Wu, Yin and Mechref, Yehia and Klouckova, Iveta and Novotny, Milos V. and Tang, Haixu},
TITLE = {A computational approach for the identification of site-specific protein glycosylations through ion-trap mass spectrometry},
BOOKTITLE = {Proceedings of the Joint RECOMB 2006 Satellite Workshops on Systems Biology and on Computational Proteomics (San Diego, CA, USA, December 1-3, 2006)},
SERIES = {LNCS/LNBI},
VOLUME = {4532},
PAGES = {96-107},
YEAR = {2007},
EDITOR = {Ideker, Trey and Bafna, Vineet},
URL = {http://springerlink.metapress.com/content/125m55598r128r35/fulltext.pdf},
PUBLISHER = {Springer-Verlag},
ADDRESS = {Berlin-Heidelberg},
}
@incollection{Ruths-Tseng-Nakhleh-Ram/07,
AUTHOR = {Ruths, Derek and Tseng, Jen-Te and Nakhleh, Luay and Ram, Prahlad T.},
TITLE = {De novo signaling pathway predictions based on protein-protein interaction, targeted therapy and protein microarray analysis},
BOOKTITLE = {Proceedings of the Joint RECOMB 2006 Satellite Workshops on Systems Biology and on Computational Proteomics (San Diego, CA, USA, December 1-3, 2006)},
SERIES = {LNCS/LNBI},
VOLUME = {4532},
PAGES = {108-118},
YEAR = {2007},
EDITOR = {Ideker, Trey and Bafna, Vineet},
URL = {http://springerlink.metapress.com/content/93gk07132r03l516/fulltext.pdf},
PUBLISHER = {Springer-Verlag},
ADDRESS = {Berlin-Heidelberg},
}
@incollection{Fasulo-Emde-Wang-Noy-Edwards/07,
AUTHOR = {Fasulo, Daniel and Emde, Anne-Katrin and Wang, Lu-Yong and Noy, Karin and Edwards, Nathan},
TITLE = {Alignment of mass spectrometry data by clique finding and optimization},
BOOKTITLE = {Proceedings of the Joint RECOMB 2006 Satellite Workshops on Systems Biology and on Computational Proteomics (San Diego, CA, USA, December 1-3, 2006)},
SERIES = {LNCS/LNBI},
VOLUME = {4532},
PAGES = {119-129},
YEAR = {2007},
EDITOR = {Ideker, Trey and Bafna, Vineet},
URL = {http://springerlink.metapress.com/content/h716314047k25505/fulltext.pdf},
PUBLISHER = {Springer-Verlag},
ADDRESS = {Berlin-Heidelberg},
}