@incollection{Behzadi-Vingron/06,
AUTHOR = {Behzadi, Behshad and Vingron, Martin},
TITLE = {Reconstructing domain compositions of ancestral multi-domain proteins},
BOOKTITLE = {Proceedings of the RECOMB 2006 International Workshop on Comparative Genomics, RCG'2006 (Montreal, Canada, September 24-26, 2006)},
SERIES = {LNCS/LNBI},
VOLUME = {4205},
PAGES = {1-10},
YEAR = {2006},
EDITOR = {Bourque, Guillaume and El-Mabrouk, Nadia},
URL = {http://springerlink.metapress.com/content/mp5112r52h65rt12/fulltext.pdf},
PUBLISHER = {Springer-Verlag},
ADDRESS = {Berlin-Heidelberg},
}
@incollection{Song-Sedgewick-Durand/06,
AUTHOR = {Song, N. and Sedgewick, R.D. and Durand, D.},
TITLE = {Domain architecture in homolog identification},
BOOKTITLE = {Proceedings of the RECOMB 2006 International Workshop on Comparative Genomics, RCG'2006 (Montreal, Canada, September 24-26, 2006)},
SERIES = {LNCS/LNBI},
VOLUME = {4205},
PAGES = {11-23},
YEAR = {2006},
EDITOR = {Bourque, Guillaume and El-Mabrouk, Nadia},
URL = {http://springerlink.metapress.com/content/y3225u0674630007/fulltext.pdf},
PUBLISHER = {Springer-Verlag},
ADDRESS = {Berlin-Heidelberg},
}
@incollection{Blin-Chateau-Chauve-Gingras/06,
AUTHOR = {Blin, Guillaume and Chateau, Annie and Chauve, Cedric and Gingras, Yannick},
TITLE = {Inferring positional homologs with common intervals of sequences},
BOOKTITLE = {Proceedings of the RECOMB 2006 International Workshop on Comparative Genomics, RCG'2006 (Montreal, Canada, September 24-26, 2006)},
SERIES = {LNCS/LNBI},
VOLUME = {4205},
PAGES = {24-38},
YEAR = {2006},
EDITOR = {Bourque, Guillaume and El-Mabrouk, Nadia},
URL = {http://springerlink.metapress.com/content/0j88k1260l2h4303/fulltext.pdf},
PUBLISHER = {Springer-Verlag},
ADDRESS = {Berlin-Heidelberg},
}
@incollection{Wojtowicz-Tiuryn/06,
AUTHOR = {W{\'o}jtowicz, Damian and Tiuryn, Jerzy},
TITLE = {On genome evolution with accumulated change and innovation},
BOOKTITLE = {Proceedings of the RECOMB 2006 International Workshop on Comparative Genomics, RCG'2006 (Montreal, Canada, September 24-26, 2006)},
SERIES = {LNCS/LNBI},
VOLUME = {4205},
PAGES = {39-50},
YEAR = {2006},
EDITOR = {Bourque, Guillaume and El-Mabrouk, Nadia},
URL = {http://springerlink.metapress.com/content/g6820140w6667174/fulltext.pdf},
PUBLISHER = {Springer-Verlag},
ADDRESS = {Berlin-Heidelberg},
}
@incollection{Xu-Zheng-Sankoff/06,
AUTHOR = {Xu, Wei and Zheng, Chunfang and Sankoff, David},
TITLE = {Paths and cycles in breakpoint graphs of random multichromosomal genomes},
BOOKTITLE = {Proceedings of the RECOMB 2006 International Workshop on Comparative Genomics, RCG'2006 (Montreal, Canada, September 24-26, 2006)},
SERIES = {LNCS/LNBI},
VOLUME = {4205},
PAGES = {51-62},
YEAR = {2006},
EDITOR = {Bourque, Guillaume and El-Mabrouk, Nadia},
URL = {http://springerlink.metapress.com/content/8821133172825q52/fulltext.pdf},
PUBLISHER = {Springer-Verlag},
ADDRESS = {Berlin-Heidelberg},
}
@incollection{Adam-Turmel-Lemieux-Sankoff/06,
AUTHOR = {Adam, Zaky and Turmel, Monique and Lemieux, Claude and Sankoff, David},
TITLE = {Common intervals and symmetric difference in a model-free phylogenomics, with an application to streptophyte evolution},
BOOKTITLE = {Proceedings of the RECOMB 2006 International Workshop on Comparative Genomics, RCG'2006 (Montreal, Canada, September 24-26, 2006)},
SERIES = {LNCS/LNBI},
VOLUME = {4205},
PAGES = {63-74},
YEAR = {2006},
EDITOR = {Bourque, Guillaume and El-Mabrouk, Nadia},
URL = {http://springerlink.metapress.com/content/q36601035032201v/fulltext.pdf},
PUBLISHER = {Springer-Verlag},
ADDRESS = {Berlin-Heidelberg},
}
@incollection{Angibaud-Fertin-Rusu-Vialette/06,
AUTHOR = {Angibaud, S{\'e}bastien and Fertin, Guillaume and Rusu, Irena and Vialette, St{\'e}phane},
TITLE = {How pseudo-Boolean programming can help genome rearrangement distance computation},
BOOKTITLE = {Proceedings of the RECOMB 2006 International Workshop on Comparative Genomics, RCG'2006 (Montreal, Canada, September 24-26, 2006)},
SERIES = {LNCS/LNBI},
VOLUME = {4205},
PAGES = {75-86},
YEAR = {2006},
EDITOR = {Bourque, Guillaume and El-Mabrouk, Nadia},
URL = {http://springerlink.metapress.com/content/921h3jh838x50521/fulltext.pdf},
PUBLISHER = {Springer-Verlag},
ADDRESS = {Berlin-Heidelberg},
}
@incollection{Ozery-Flato-Shamir/06,
AUTHOR = {Ozery-Flato, Michal and Shamir, Ron},
TITLE = {Sorting by translocations via reversals theory},
BOOKTITLE = {Proceedings of the RECOMB 2006 International Workshop on Comparative Genomics, RCG'2006 (Montreal, Canada, September 24-26, 2006)},
SERIES = {LNCS/LNBI},
VOLUME = {4205},
PAGES = {87-98},
YEAR = {2006},
EDITOR = {Bourque, Guillaume and El-Mabrouk, Nadia},
URL = {http://springerlink.metapress.com/content/105316q496857048/fulltext.pdf},
PUBLISHER = {Springer-Verlag},
ADDRESS = {Berlin-Heidelberg},
}
@incollection{Blin-Blais-Guillon-Blanchette-El-Mabrouk/06,
AUTHOR = {Blin, Guillaume and Blais, Eric and Guillon, Pierre and Blanchette, Mathieu and El-Mabrouk, Nadia},
TITLE = {Inferring gene orders from gene maps using the breakpoint distance},
BOOKTITLE = {Proceedings of the RECOMB 2006 International Workshop on Comparative Genomics, RCG'2006 (Montreal, Canada, September 24-26, 2006)},
SERIES = {LNCS/LNBI},
VOLUME = {4205},
PAGES = {99-112},
YEAR = {2006},
EDITOR = {Bourque, Guillaume and El-Mabrouk, Nadia},
URL = {http://springerlink.metapress.com/content/h052850746q33010/fulltext.pdf},
PUBLISHER = {Springer-Verlag},
ADDRESS = {Berlin-Heidelberg},
}
@incollection{Gaul-Blanchette/06,
AUTHOR = {Gaul, {\'E}ric and Blanchette, Mathieu},
TITLE = {Ordering partially assembled genomes using gene arrangements},
BOOKTITLE = {Proceedings of the RECOMB 2006 International Workshop on Comparative Genomics, RCG'2006 (Montreal, Canada, September 24-26, 2006)},
SERIES = {LNCS/LNBI},
VOLUME = {4205},
PAGES = {113-128},
YEAR = {2006},
EDITOR = {Bourque, Guillaume and El-Mabrouk, Nadia},
URL = {http://springerlink.metapress.com/content/w5002056m51547w4/fulltext.pdf},
PUBLISHER = {Springer-Verlag},
ADDRESS = {Berlin-Heidelberg},
}
@incollection{Bertrand-Lajoie-El-Mabrouk-Gascuel/06,
AUTHOR = {Bertrand, Denis and Lajoie, Mathieu and El-Mabrouk, Nadia and Gascuel, Olivier},
TITLE = {Evolution of tandemly repeated sequences through duplication and inversion},
BOOKTITLE = {Proceedings of the RECOMB 2006 International Workshop on Comparative Genomics, RCG'2006 (Montreal, Canada, September 24-26, 2006)},
SERIES = {LNCS/LNBI},
VOLUME = {4205},
PAGES = {129-140},
YEAR = {2006},
EDITOR = {Bourque, Guillaume and El-Mabrouk, Nadia},
URL = {http://springerlink.metapress.com/content/652311700266663v/fulltext.pdf},
PUBLISHER = {Springer-Verlag},
ADDRESS = {Berlin-Heidelberg},
}
@incollection{Parida/06,
AUTHOR = {Parida, Laxmi},
TITLE = {A PQ framework for reconstructions of common ancestors and phylogeny},
BOOKTITLE = {Proceedings of the RECOMB 2006 International Workshop on Comparative Genomics, RCG'2006 (Montreal, Canada, September 24-26, 2006)},
SERIES = {LNCS/LNBI},
VOLUME = {4205},
PAGES = {141-155},
YEAR = {2006},
EDITOR = {Bourque, Guillaume and El-Mabrouk, Nadia},
URL = {http://springerlink.metapress.com/content/e2648465r17258x2/fulltext.pdf},
PUBLISHER = {Springer-Verlag},
ADDRESS = {Berlin-Heidelberg},
}
@incollection{Coulombe-Huntington-Majewski/06,
AUTHOR = {Coulombe-Huntington, Jasmin and Majewski, Jacek},
TITLE = {Intron loss dynamics in mammals},
BOOKTITLE = {Proceedings of the RECOMB 2006 International Workshop on Comparative Genomics, RCG'2006 (Montreal, Canada, September 24-26, 2006)},
SERIES = {LNCS/LNBI},
VOLUME = {4205},
PAGES = {156-170},
YEAR = {2006},
EDITOR = {Bourque, Guillaume and El-Mabrouk, Nadia},
URL = {http://springerlink.metapress.com/content/n51977jm13h2207m/fulltext.pdf},
PUBLISHER = {Springer-Verlag},
ADDRESS = {Berlin-Heidelberg},
}
@incollection{Diallo-Makarenkov-Blanchette/06,
AUTHOR = {Diallo, Abdoulaye Banir{\'e} and Makarenkov, Vladimir and Blanchette, Mathieu},
TITLE = {Finding maximum likelihood indel scenarios},
BOOKTITLE = {Proceedings of the RECOMB 2006 International Workshop on Comparative Genomics, RCG'2006 (Montreal, Canada, September 24-26, 2006)},
SERIES = {LNCS/LNBI},
VOLUME = {4205},
PAGES = {171-185},
YEAR = {2006},
EDITOR = {Bourque, Guillaume and El-Mabrouk, Nadia},
URL = {http://springerlink.metapress.com/content/x212810344157r23/fulltext.pdf},
PUBLISHER = {Springer-Verlag},
ADDRESS = {Berlin-Heidelberg},
}
@incollection{Evans-Donahue-Hannenhalli/06,
AUTHOR = {Evans, Perry and Donahue, Greg and Hannenhalli, Sridhar},
TITLE = {Conservation patterns in $cis$-elements reveal compensatory mutations},
BOOKTITLE = {Proceedings of the RECOMB 2006 International Workshop on Comparative Genomics, RCG'2006 (Montreal, Canada, September 24-26, 2006)},
SERIES = {LNCS/LNBI},
VOLUME = {4205},
PAGES = {186-199},
YEAR = {2006},
EDITOR = {Bourque, Guillaume and El-Mabrouk, Nadia},
URL = {http://springerlink.metapress.com/content/76u7215425410445/fulltext.pdf},
PUBLISHER = {Springer-Verlag},
ADDRESS = {Berlin-Heidelberg},
}
@incollection{Banerjee-Califano/06,
AUTHOR = {Banerjee, Nilanjana and Califano, Andrea},
TITLE = {Transcription factor centric discovery of regulatory elements in mammalian genomes using alignment-independent conservation maps},
BOOKTITLE = {Proceedings of the RECOMB 2006 International Workshop on Comparative Genomics, RCG'2006 (Montreal, Canada, September 24-26, 2006)},
SERIES = {LNCS/LNBI},
VOLUME = {4205},
PAGES = {200-214},
YEAR = {2006},
EDITOR = {Bourque, Guillaume and El-Mabrouk, Nadia},
URL = {http://springerlink.metapress.com/content/p4k7164165818v6t/fulltext.pdf},
PUBLISHER = {Springer-Verlag},
ADDRESS = {Berlin-Heidelberg},
}
@incollection{Than-Ruths-Innan-Nakhleh/06,
AUTHOR = {Than, Cuong and Ruths, Derek and Innan, Hideki and Nakhleh, Luay},
TITLE = {Identifiability issues in phylogeny-based detection of horizontal gene transfer},
BOOKTITLE = {Proceedings of the RECOMB 2006 International Workshop on Comparative Genomics, RCG'2006 (Montreal, Canada, September 24-26, 2006)},
SERIES = {LNCS/LNBI},
VOLUME = {4205},
PAGES = {215-229},
YEAR = {2006},
EDITOR = {Bourque, Guillaume and El-Mabrouk, Nadia},
URL = {http://springerlink.metapress.com/content/f6324062713r664j/fulltext.pdf},
PUBLISHER = {Springer-Verlag},
ADDRESS = {Berlin-Heidelberg},
}