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Santhosh and Nanjundiah, R. and Thazhuthaveetil, M.J. and Govindarajan, R.}, TITLE = {Impact of message compression on the scalability of an atmospheric modeling application on clusters}, JOURNAL = {Parallel Computing}, VOLUME = {34}, NUMBER = {1}, PAGES = {1-16}, YEAR = {2008}, EDITOR = {Reed, D.}, KEYWORDS = {cluster computing, communication layer, message compression, parallel application, atmospheric modeling}, URL = {http://www.sciencedirect.com/science/article/B6V12-4PYYTKS-1/1/9785ebe4f97effe46f2dbd68b7c116c4}, PUBLISHER = {Elsevier B.V.}, ADDRESS = {Amsterdam-Boston-Jena-London-New York-Oxford-Paris-Philadelphia-San Diego-St. Louis}, } @article{Deng-Wang-Helian-Wu-Liao/08, AUTHOR = {Deng, Yuhui and Wang, Frank and Helian, Na and Wu, Sining and Liao, Chenhan}, TITLE = {Dynamic and scalable storage management architecture for Grid Oriented Storage devices}, JOURNAL = {Parallel Computing}, VOLUME = {34}, NUMBER = {1}, PAGES = {17-31}, YEAR = {2008}, EDITOR = {Reed, D.}, KEYWORDS = {storage management, data locality, storage grid, peer-to-peer, grid service}, URL = {http://www.sciencedirect.com/science/article/B6V12-4R0CJXK-1/1/0c710bba9818428ad2f617ce62e8e490}, PUBLISHER = {Elsevier B.V.}, ADDRESS = {Amsterdam-Boston-Jena-London-New York-Oxford-Paris-Philadelphia-San Diego-St. Louis}, } @article{Brazile-Richter-Schlapfer-Schaepman-Itten/08, AUTHOR = {Brazile, Jason and Richter, Rudolf and Schl{\"a}pfer, Daniel and Schaepman, Michael E. and Itten, Klaus I.}, TITLE = {Cluster versus grid for operational generation of ATCOR's MODTRAN-based look up tables}, JOURNAL = {Parallel Computing}, VOLUME = {34}, NUMBER = {1}, PAGES = {32-46}, YEAR = {2008}, EDITOR = {Reed, D.}, KEYWORDS = {atmospheric correction, imaging spectroscopy}, URL = {http://www.sciencedirect.com/science/article/B6V12-4R5VYF7-1/1/9fb6e2520bd51cf94b0cbc37f79ce6a2}, PUBLISHER = {Elsevier B.V.}, ADDRESS = {Amsterdam-Boston-Jena-London-New York-Oxford-Paris-Philadelphia-San Diego-St. Louis}, } @article{Chan-Dehne-Bose-Latzel/08, AUTHOR = {Chan, Albert and Dehne, Frank and Bose, Prosenjit and Latzel, Markus}, TITLE = {Coarse grained parallel algorithms for graph matching}, JOURNAL = {Parallel Computing}, VOLUME = {34}, NUMBER = {1}, PAGES = {47-62}, YEAR = {2008}, EDITOR = {Reed, D.}, KEYWORDS = {graph matching, parallel algorithm, coarse grained parallel computing, convex bipartite graph, unrooted tree}, URL = {http://www.sciencedirect.com/science/article/B6V12-4R7J5XY-1/1/8685cd9669ab9557ef281f1af61fdd0d}, PUBLISHER = {Elsevier B.V.}, ADDRESS = {Amsterdam-Boston-Jena-London-New York-Oxford-Paris-Philadelphia-San Diego-St. Louis}, } @article{Chedid/08, AUTHOR = {Chedid, Fouad B.}, TITLE = {An optimal parallelization of the two-list algorithm of cost $O(2^{n/2})$}, JOURNAL = {Parallel Computing}, VOLUME = {34}, NUMBER = {1}, PAGES = {63-65}, YEAR = {2008}, EDITOR = {Reed, D.}, KEYWORDS = {knapsack problem, two-list algorithm, parallel algorithms}, URL = 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TITLE = {An experimental comparison of parallel algorithms for hyperspectral analysis using heterogeneous and homogeneous networks of workstations}, JOURNAL = {Parallel Computing}, VOLUME = {34}, NUMBER = {2}, PAGES = {92-114}, YEAR = {2008}, EDITOR = {Reed, D.}, KEYWORDS = {parallel algorithm design, heterogeneous computing, hyperspectral image analysis, hyperspectral data processing chain, load balance}, URL = {http://www.sciencedirect.com/science/article/B6V12-4RM7MRK-1/1/4d4719ce177beab9a12415694b27dd2c}, PUBLISHER = {Elsevier B.V.}, ADDRESS = {Amsterdam-Boston-Jena-London-New York-Oxford-Paris-Philadelphia-San Diego-St. Louis}, } @article{Murli-DAmore-Carracciuolo-Ceccarelli-Antonelli/08, AUTHOR = {Murli, A. and D'Amore, L. and Carracciuolo, L. and Ceccarelli, M. and Antonelli, L.}, TITLE = {High performance edge-preserving regularization in 3D SPECT imaging}, JOURNAL = {Parallel Computing}, VOLUME = {34}, NUMBER = {2}, PAGES = {115-132}, YEAR = {2008}, EDITOR = {Reed, D.}, KEYWORDS = {spect imaging, inverse problems, total variation regularization, parallel implementation}, URL = {http://www.sciencedirect.com/science/article/B6V12-4RJYV1H-1/1/9e79c721b24e3825f7a752ef99b9e0cc}, PUBLISHER = {Elsevier B.V.}, ADDRESS = {Amsterdam-Boston-Jena-London-New York-Oxford-Paris-Philadelphia-San Diego-St. Louis}, } @article{Gutierrez-Plata-Zapata/08, AUTHOR = {Guti{\'e}rrez, Eladio and Plata, Oscar and Zapata, Emilio L.}, TITLE = {An analytical model of locality-based parallel irregular reductions}, JOURNAL = {Parallel Computing}, VOLUME = {34}, NUMBER = {3}, PAGES = {133-157}, YEAR = {2008}, EDITOR = {Reed, D.}, KEYWORDS = {irregular reductions, parallelism, locality, compiler techniques}, URL = {http://www.sciencedirect.com/science/article/B6V12-4RP0MDD-1/1/9b30f9814bc3bd482f89ec9d25bdeb30}, PUBLISHER = {Elsevier B.V.}, ADDRESS = {Amsterdam-Boston-Jena-London-New York-Oxford-Paris-Philadelphia-San Diego-St. Louis}, } @article{Pineau-Robert-Vivien/08, AUTHOR = 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Chandra Sekhara and Sarita}, TITLE = {Parallel solution of large symmetric tridiagonal linear systems}, JOURNAL = {Parallel Computing}, VOLUME = {34}, NUMBER = {3}, PAGES = {177-197}, YEAR = {2008}, EDITOR = {Reed, D.}, KEYWORDS = {symmetric positive definite linear system, tridiagonal matrix, parallel computing, backward error analysis}, URL = {http://www.sciencedirect.com/science/article/B6V12-4S1C84S-1/1/0d05bca8d14668aa3a4b148e57557e89}, PUBLISHER = {Elsevier B.V.}, ADDRESS = {Amsterdam-Boston-Jena-London-New York-Oxford-Paris-Philadelphia-San Diego-St. Louis}, } @article{Chamberlain-Lancaster-Cytron/08, AUTHOR = {Chamberlain, Roger D. and Lancaster, Joseph M. and Cytron, Ron K.}, TITLE = {Visions for application development on hybrid computing systems}, JOURNAL = {Parallel Computing}, VOLUME = {34}, NUMBER = {4-5}, PAGES = {201-216}, YEAR = {2008}, EDITOR = {Reed, D.}, KEYWORDS = {coordination languages, chip multiprocessors, field-programmable, logic arrays, graphics processing units}, URL = {http://www.sciencedirect.com/science/article/B6V12-4S2TRWH-1/1/7870454258075a7bb340349b4cc74981}, PUBLISHER = {Elsevier B.V.}, ADDRESS = {Amsterdam-Boston-Jena-London-New York-Oxford-Paris-Philadelphia-San Diego-St. Louis}, } @article{Koehler-Curreri-George/08, AUTHOR = {Koehler, Seth and Curreri, John and George, Alan D.}, TITLE = {Performance analysis challenges and framework for high-performance reconfigurable computing}, JOURNAL = {Parallel Computing}, VOLUME = {34}, NUMBER = {4-5}, PAGES = {217-230}, YEAR = {2008}, EDITOR = {Reed, D.}, KEYWORDS = {reconfigurable computing, fpga, performance analysis, instrumentation, measurement, visualization}, URL = {http://www.sciencedirect.com/science/article/B6V12-4S03R96-1/1/417720b606ef3782256cd011a94f0fbc}, PUBLISHER = {Elsevier B.V.}, ADDRESS = {Amsterdam-Boston-Jena-London-New York-Oxford-Paris-Philadelphia-San Diego-St. Louis}, } @article{Wirthlin-Poznanovic-Sundararajan-Coppola-Pellerin-Najjar-Bruce-Babst-Pritchard-Palazzari-Kuzmanov/08, AUTHOR = {Wirthlin, M. and Poznanovic, D. and Sundararajan, P. and Coppola, A. and Pellerin, D. and Najjar, W. and Bruce, R. and Babst, M. and Pritchard, O. and Palazzari, P. and Kuzmanov, G.}, TITLE = {OpenFPGA CoreLib core library interoperability effort}, JOURNAL = {Parallel Computing}, VOLUME = {34}, NUMBER = {4-5}, PAGES = {231-244}, YEAR = {2008}, EDITOR = {Reed, D.}, KEYWORDS = {reconfigurable computing, hdl cores, core library, standards}, URL = {http://www.sciencedirect.com/science/article/B6V12-4S5FJ75-1/1/d9b14bfd63122cf2c4d0127a660ca7c8}, PUBLISHER = {Elsevier B.V.}, ADDRESS = {Amsterdam-Boston-Jena-London-New York-Oxford-Paris-Philadelphia-San Diego-St. Louis}, } @article{Saha-El-Araby-Huang-Taher-Lopez-Buedo-El-Ghazawi-Shu-Gaj-Michalski-Buell/08, AUTHOR = {Saha, Proshanta and El-Araby, Esam and Huang, Miaoqing and Taher, Mohamed and Lopez-Buedo, Sergio and El-Ghazawi, Tarek and Shu, Chang and Gaj, Kris and Michalski, Alan and Buell, Duncan}, TITLE = {Portable library development for reconfigurable computing systems: A case study}, JOURNAL = {Parallel Computing}, VOLUME = {34}, NUMBER = {4-5}, PAGES = {245-260}, YEAR = {2008}, EDITOR = {Reed, D.}, KEYWORDS = {reconfigurable computing, portable libraries, fpga, hardware design methodologies}, URL = {http://www.sciencedirect.com/science/article/B6V12-4S575NJ-1/1/a29209eecc81d8056ce3fd51e8eba357}, PUBLISHER = {Elsevier B.V.}, ADDRESS = {Amsterdam-Boston-Jena-London-New York-Oxford-Paris-Philadelphia-San Diego-St. Louis}, } @article{Gu-VanCourt-Herbordt/08, AUTHOR = {Gu, Yongfeng and VanCourt, Tom and Herbordt, Martin C.}, TITLE = {Explicit design of FPGA-based coprocessors for short-range force computations in molecular dynamics simulations}, JOURNAL = {Parallel Computing}, VOLUME = {34}, NUMBER = {4-5}, PAGES = {261-277}, YEAR = {2008}, EDITOR = {Reed, D.}, KEYWORDS = {high performance reconfigurable computing, fpga, molecular dynamics, coprocessor, accelerator}, URL = {http://www.sciencedirect.com/science/article/B6V12-4RY8SGH-1/1/85566d8a8410041fade3ba7676972b71}, PUBLISHER = {Elsevier B.V.}, ADDRESS = {Amsterdam-Boston-Jena-London-New York-Oxford-Paris-Philadelphia-San Diego-St. Louis}, } @article{Gothandaraman-Peterson-Warren-Hinde-Harrison/08, AUTHOR = {Gothandaraman, Akila and Peterson, Gregory D. and Warren, G.L. and Hinde, Robert J. and Harrison, Robert J.}, TITLE = {FPGA acceleration of a quantum Monte Carlo application}, JOURNAL = {Parallel Computing}, VOLUME = {34}, NUMBER = {4-5}, PAGES = {278-291}, YEAR = {2008}, EDITOR = {Reed, D.}, KEYWORDS = {reconfigurable computing, computational chemistry, hardware acceleration, monte carlo}, URL = {http://www.sciencedirect.com/science/article/B6V12-4S03R96-2/1/7a250e1a0d7071ec707c4722fa009e0f}, PUBLISHER = {Elsevier B.V.}, ADDRESS = {Amsterdam-Boston-Jena-London-New York-Oxford-Paris-Philadelphia-San Diego-St. Louis}, } @article{Agullo-Guermouche-LExcellent/08, AUTHOR = {Agullo, Emmanuel and Guermouche, Abdou and L'Excellent, Jean-Yves}, TITLE = {A parallel out-of-core multifrontal method: Storage of factors on disk and analysis of models for an out-of-core active memory}, JOURNAL = {Parallel Computing}, VOLUME = {34}, NUMBER = {6-8}, PAGES = {296-317}, YEAR = {2008}, EDITOR = {Reed, D.}, KEYWORDS = {sparse direct solvers, parallel multifrontal method, out-of-core}, URL = {http://www.sciencedirect.com/science/article/B6V12-4S7J54M-3/1/ee584a11e18cc646c1edeb8abaf4b54a}, PUBLISHER = {Elsevier B.V.}, ADDRESS = {Amsterdam-Boston-Jena-London-New York-Oxford-Paris-Philadelphia-San Diego-St. Louis}, } @article{Chevalier-Pellegrini/08, AUTHOR = {Chevalier, C. and Pellegrini, F.}, TITLE = {PT-SCOTSCH: A tool for efficient parallel graph ordering}, JOURNAL = {Parallel Computing}, VOLUME = {34}, NUMBER = {6-8}, PAGES = {318-331}, YEAR = {2008}, EDITOR = {Reed, D.}, KEYWORDS = {parallel graph ordering, parallel nested dissection, distributed-memory computer, multi-threading}, URL = {http://www.sciencedirect.com/science/article/B6V12-4RDS1H6-1/1/e9899fc7243f6944dca7713fbe9f648e}, PUBLISHER = {Elsevier B.V.}, ADDRESS = {Amsterdam-Boston-Jena-London-New York-Oxford-Paris-Philadelphia-San Diego-St. Louis}, } @article{Kahou-Grigori-Sosonkina/08, AUTHOR = {Kahou, Guy Antoine Atenekeng and Grigori, Laura and Sosonkina, Masha}, TITLE = {A partitioning algorithm for block-diagonal matrices with overlap}, JOURNAL = {Parallel Computing}, VOLUME = {34}, NUMBER = {6-8}, PAGES = {332-344}, YEAR = {2008}, EDITOR = {Reed, D.}, KEYWORDS = {domain decomposition, multiplicative schwarz preconditioner, gmres, graph partitioning}, URL = {http://www.sciencedirect.com/science/article/B6V12-4RRFN4S-2/1/5afb60a63c05ce372542fe99bc200ee9}, PUBLISHER = {Elsevier B.V.}, ADDRESS = {Amsterdam-Boston-Jena-London-New York-Oxford-Paris-Philadelphia-San Diego-St. Louis}, } @article{Henon-Ramet-Roman/08, AUTHOR = {H{\'e}non, Pascal and Ramet, Pierre and Roman, Jean}, TITLE = {On finding approximate supernodes for an efficient block-ILU$(k)$ factorization}, JOURNAL = {Parallel Computing}, VOLUME = {34}, NUMBER = {6-8}, PAGES = {345-362}, YEAR = {2008}, EDITOR = {Reed, D.}, KEYWORDS = {sparse linear algebra, incomplete ilu factorization, high performance computing}, URL = {http://www.sciencedirect.com/science/article/B6V12-4RGM0PJ-1/1/a0cddb5efa19fd97230b351f8a7e17d7}, PUBLISHER = {Elsevier B.V.}, ADDRESS = {Amsterdam-Boston-Jena-London-New York-Oxford-Paris-Philadelphia-San Diego-St. Louis}, } @article{Giraud-Haidar-Watson/08, AUTHOR = {Giraud, L. and Haidar, A. and Watson, L.T.}, TITLE = {Parallel scalability study of hybrid preconditioners in three dimensions}, JOURNAL = {Parallel Computing}, VOLUME = {34}, NUMBER = {6-8}, PAGES = {363-379}, YEAR = {2008}, EDITOR = {Reed, D.}, KEYWORDS = {large sparse linear systems, sparse direct solvers, iterative methods, preconditioned krylov solvers, parallel computing, elliptic pde}, URL = {http://www.sciencedirect.com/science/article/B6V12-4RSRD9N-1/1/7249c661f327f64233f7c0a37e242562}, PUBLISHER = {Elsevier B.V.}, ADDRESS = {Amsterdam-Boston-Jena-London-New York-Oxford-Paris-Philadelphia-San Diego-St. Louis}, } @article{Couturier-Denis-Jezequel/08, AUTHOR = {Couturier, Rapha{\"e}l and Denis, Christophe and J{\'e}z{\'e}quel, Fabienne}, TITLE = {GREMLINS: A large sparse linear solver for grid environment}, JOURNAL = {Parallel Computing}, VOLUME = {34}, NUMBER = {6-8}, PAGES = {380-391}, YEAR = {2008}, EDITOR = {Reed, D.}, KEYWORDS = {sparse linear solver, iterative method, asynchronous iterations, multisplitting method, grid computing}, URL = {http://www.sciencedirect.com/science/article/B6V12-4RDS3W7-1/1/17c9ca5b6bbdb03237bf3224dc454e17}, PUBLISHER = {Elsevier B.V.}, ADDRESS = {Amsterdam-Boston-Jena-London-New York-Oxford-Paris-Philadelphia-San Diego-St. Louis}, } @article{Yamanaka-Ogita-Rump-Oishi/08, AUTHOR = {Yamanaka, N. and Ogita, T. and Rump, S.M. and Oishi, S.}, TITLE = {A parallel algorithm for accurate dot product}, JOURNAL = {Parallel Computing}, VOLUME = {34}, NUMBER = {6-8}, PAGES = {392-410}, YEAR = {2008}, EDITOR = {Reed, D.}, KEYWORDS = {parallel algorithm, accurate dot product, accurate summation, higher precision}, URL = {http://www.sciencedirect.com/science/article/B6V12-4S33N13-1/1/8d361d82157565e4f4a3c95af1924e7f}, PUBLISHER = {Elsevier B.V.}, ADDRESS = {Amsterdam-Boston-Jena-London-New York-Oxford-Paris-Philadelphia-San Diego-St. Louis}, } @article{Hunold-Rauber-Runger/08, AUTHOR = {Hunold, S. and Rauber, T. and R{\"u}nger, G.}, TITLE = {Combining building blocks for parallel multi-level matrix multiplication}, JOURNAL = {Parallel Computing}, VOLUME = {34}, NUMBER = {6-8}, PAGES = {411-426}, YEAR = {2008}, EDITOR = {Reed, D.}, KEYWORDS = {multi-level algorithm, matrix multiplication, strassen's algorithm, multiprocessor tasks, mixed parallelism}, URL = 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Mohd}, TITLE = {Performance analysis of explicit group parallel algorithms for distributed memory multicomputer}, JOURNAL = {Parallel Computing}, VOLUME = {34}, NUMBER = {6-8}, PAGES = {427-440}, YEAR = {2008}, EDITOR = {Reed, D.}, KEYWORDS = {performance analysis, explicit group (eg) method, explicit decoupled group (edg) method, distributed memory multicomputer, poisson equation, mpi}, URL = {http://www.sciencedirect.com/science/article/B6V12-4R33517-1/1/1d1ec1afcc59ff1458c749530ffc9962}, PUBLISHER = {Elsevier B.V.}, ADDRESS = {Amsterdam-Boston-Jena-London-New York-Oxford-Paris-Philadelphia-San Diego-St. Louis}, } @article{Bekas-Curioni-Andreoni/08, AUTHOR = {Bekas, C. and Curioni, A. and Andreoni, W.}, TITLE = {Atomic wavefunction initialization in ab initio molecular dynamics using distributed Lanczos}, JOURNAL = {Parallel Computing}, VOLUME = {34}, NUMBER = {6-8}, PAGES = {441-450}, YEAR = {2008}, EDITOR = {Reed, D.}, KEYWORDS = {ab initio molecular dynamics, lanczos, large scale parallelization, bg/l supercomputer}, URL = {http://www.sciencedirect.com/science/article/B6V12-4RR8YK9-1/1/2426496ac5b48676be52e32d9e067002}, PUBLISHER = {Elsevier B.V.}, ADDRESS = {Amsterdam-Boston-Jena-London-New York-Oxford-Paris-Philadelphia-San Diego-St. Louis}, } @article{Yanev-Kontoghiorghes/08, AUTHOR = {Yanev, Petko I. and Kontoghiorghes, Erricos J.}, TITLE = {Parallel algorithms for downdating the least squares estimator of the regression model}, JOURNAL = {Parallel Computing}, VOLUME = {34}, NUMBER = {6-8}, PAGES = {451-468}, YEAR = {2008}, EDITOR = {Reed, D.}, KEYWORDS = {qr decomposition, least squares, downdating, parallel algorithm}, URL = {http://www.sciencedirect.com/science/article/B6V12-4RJYV1H-3/1/0e911148eb24ceec2c1ffac622d5935e}, PUBLISHER = {Elsevier B.V.}, ADDRESS = {Amsterdam-Boston-Jena-London-New York-Oxford-Paris-Philadelphia-San Diego-St. Louis}, } @article{Lucka-Melichercik-Halada/08, AUTHOR = {Lucka, Maria and Melichercik, Igor and Halada, Ladislav}, TITLE = {Application of multistage stochastic programs solved in parallel in portfolio management}, JOURNAL = {Parallel Computing}, VOLUME = {34}, NUMBER = {6-8}, PAGES = {469-485}, YEAR = {2008}, EDITOR = {Reed, D.}, KEYWORDS = {portfolio management, interior point method, parallel computing, large-scale optimization, multistage stochastic programming}, URL = {http://www.sciencedirect.com/science/article/B6V12-4RJYV1H-2/1/81b73c58e4e211cbbc9c745aef23c481}, PUBLISHER = {Elsevier B.V.}, ADDRESS = {Amsterdam-Boston-Jena-London-New York-Oxford-Paris-Philadelphia-San Diego-St. Louis}, } @article{Wang/08a, AUTHOR = {Wang, Dajin}, TITLE = {A linear-time algorithm for computing collision-free path on reconfigurable mesh}, JOURNAL = {Parallel Computing}, VOLUME = {34}, NUMBER = {9}, PAGES = {487-496}, YEAR = {2008}, EDITOR = {Reed, D.}, PUBLISHER = {Elsevier B.V.}, ADDRESS = {Amsterdam-Boston-Jena-London-New York-Oxford-Paris-Philadelphia-San Diego-St. Louis}, } 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York-Oxford-Paris-Philadelphia-San Diego-St. Louis}, } @article{Lin/08d, AUTHOR = {Lin, Wei-Ming}, TITLE = {Performance modeling and analysis of correlated parallel computations}, JOURNAL = {Parallel Computing}, VOLUME = {34}, NUMBER = {9}, PAGES = {521-538}, YEAR = {2008}, EDITOR = {Reed, D.}, PUBLISHER = {Elsevier B.V.}, ADDRESS = {Amsterdam-Boston-Jena-London-New York-Oxford-Paris-Philadelphia-San Diego-St. Louis}, } @article{Sanchez-Curto-Chamorro-Posada/08, AUTHOR = {S{\'{a}}nchez-Curto, J. and Chamorro-Posada, P.}, TITLE = {On a faster parallel implementation of the split-step Fourier method}, JOURNAL = {Parallel Computing}, VOLUME = {34}, NUMBER = {9}, PAGES = {539-549}, YEAR = {2008}, EDITOR = {Reed, D.}, PUBLISHER = {Elsevier B.V.}, ADDRESS = {Amsterdam-Boston-Jena-London-New York-Oxford-Paris-Philadelphia-San Diego-St. Louis}, } @article{Straubhaar/08, AUTHOR = {Straubhaar, Julien}, TITLE = {Parallel preconditioners for the conjugate gradient algorithm using Gram-Schmidt and least squares methods}, JOURNAL = {Parallel Computing}, VOLUME = {34}, NUMBER = {10}, PAGES = {551-569}, YEAR = {2008}, EDITOR = {Reed, D.}, PUBLISHER = {Elsevier B.V.}, ADDRESS = {Amsterdam-Boston-Jena-London-New York-Oxford-Paris-Philadelphia-San Diego-St. Louis}, } @article{Jeun-Kee-Ha-Kee/08, AUTHOR = {Jeun, Woo-Chul and Kee, Yang-Suk and Ha, Soonhoi and Kee, Changdon}, TITLE = {Overcoming performance bottlenecks in using OpenMP on SMP clusters}, JOURNAL = {Parallel Computing}, VOLUME = {34}, NUMBER = {10}, PAGES = {570-592}, YEAR = {2008}, EDITOR = {Reed, D.}, PUBLISHER = {Elsevier B.V.}, ADDRESS = {Amsterdam-Boston-Jena-London-New York-Oxford-Paris-Philadelphia-San Diego-St. Louis}, } @article{Mastroianni-Talia-Verta/08, AUTHOR = {Mastroianni, Carlo and Talia, Domenico and Verta, Oreste}, TITLE = {Designing an information system for Grids: Comparing hierarchical, decentralized P2P and super-peer models}, JOURNAL = {Parallel Computing}, VOLUME = {34}, NUMBER = {10}, PAGES = {593-611}, YEAR = {2008}, EDITOR = {Reed, D.}, PUBLISHER = {Elsevier B.V.}, ADDRESS = {Amsterdam-Boston-Jena-London-New York-Oxford-Paris-Philadelphia-San Diego-St. Louis}, } @article{Sachdeva-Kistler-Speight-Tzeng/08, AUTHOR = {Sachdeva, Vipin and Kistler, Michael and Speight, Evan and Tzeng, Tzy-Hwa Kathy}, TITLE = {Exploring the viability of the Cell Broadband Engine for bioinformatics applications}, JOURNAL = {Parallel Computing}, VOLUME = {34}, NUMBER = {11}, PAGES = {616-626}, YEAR = {2008}, EDITOR = {Reed, D.}, PUBLISHER = {Elsevier B.V.}, ADDRESS = {Amsterdam-Boston-London-New York-Oxford-Paris-Philadelphia-San Diego-St. Louis}, } @article{Bader-Madduri/08, AUTHOR = {Bader, David A. and Madduri, Kamesh}, TITLE = {A graph-theoretic analysis of the human protein-interaction network using multicore parallel algorithms}, JOURNAL = {Parallel Computing}, VOLUME = {34}, NUMBER = {11}, PAGES = {627-639}, YEAR = {2008}, EDITOR = {Reed, D.}, PUBLISHER = {Elsevier B.V.}, ADDRESS = {Amsterdam-Boston-London-New York-Oxford-Paris-Philadelphia-San Diego-St. Louis}, } @article{Alam-Agarwal-Vetter/08, AUTHOR = {Alam, Sadaf R. and Agarwal, Pratul K. and Vetter, Jeffrey S.}, TITLE = {Performance characteristics of biomolecular simulations on high-end systems with multi-core processors}, JOURNAL = {Parallel Computing}, VOLUME = {34}, NUMBER = {11}, PAGES = {640-651}, YEAR = {2008}, EDITOR = {Reed, D.}, PUBLISHER = {Elsevier B.V.}, ADDRESS = {Amsterdam-Boston-London-New York-Oxford-Paris-Philadelphia-San Diego-St. Louis}, } @article{Brenner-Wozniak-Thain-Striegel-Peng-Izaguirre/08, AUTHOR = {Brenner, P. and Wozniak, J.M. and Thain, D. and Striegel, A. and Peng, J.W. and Izaguirre, J.A.}, TITLE = {Biomolecular committor probability calculation enabled by processing in network storage}, JOURNAL = {Parallel Computing}, VOLUME = {34}, NUMBER = {11}, PAGES = {652-660}, YEAR = {2008}, EDITOR = {Reed, D.}, PUBLISHER = {Elsevier B.V.}, ADDRESS = {Amsterdam-Boston-London-New York-Oxford-Paris-Philadelphia-San Diego-St. Louis}, } @article{Taufer-Leung-Solorio-Licon-Mireles-Araiza-Johnson/08, AUTHOR = {Taufer, Michela and Leung, Ming-Ying and Solorio, Thamar and Licon, Abel and Mireles, David and Araiza, Roberto and Johnson, Kyle L.}, TITLE = {RNAVLab: A virtual laboratory for studying RNA secondary structures based on grid computing technology}, JOURNAL = {Parallel Computing}, VOLUME = {34}, NUMBER = {11}, PAGES = {661-680}, YEAR = {2008}, EDITOR = {Reed, D.}, PUBLISHER = {Elsevier B.V.}, ADDRESS = {Amsterdam-Boston-London-New York-Oxford-Paris-Philadelphia-San Diego-St. Louis}, } @article{Oliver-Yeow-Schmidt/08, AUTHOR = {Oliver, Tim and Yeow, Leow Yuan and Schmidt, Bertil}, TITLE = {Integrating FPGA acceleration into HMMer}, JOURNAL = {Parallel Computing}, VOLUME = {34}, NUMBER = {11}, PAGES = {681-691}, YEAR = {2008}, EDITOR = {Reed, D.}, PUBLISHER = {Elsevier B.V.}, ADDRESS = {Amsterdam-Boston-London-New York-Oxford-Paris-Philadelphia-San Diego-St. Louis}, } @article{Merigot-Petrosino/08, AUTHOR = {Merigot, Alain and Petrosino, Alfredo}, TITLE = {Parallel processing for image and video processing: Issues and challenges}, JOURNAL = {Parallel Computing}, VOLUME = {34}, NUMBER = {12}, PAGES = {694-699}, YEAR = {2008}, EDITOR = {Reed, D.}, PUBLISHER = {Elsevier B.V.}, ADDRESS = {Amsterdam-Boston-London-New York-Oxford-Paris-Philadelphia-San Diego-St. Louis}, } @article{Kao/08, AUTHOR = {Kao, O.}, TITLE = {On parallel image retrieval with dynamically extracted features}, JOURNAL = {Parallel Computing}, VOLUME = {34}, NUMBER = {12}, PAGES = {700-709}, YEAR = {2008}, EDITOR = {Reed, D.}, PUBLISHER = {Elsevier B.V.}, ADDRESS = {Amsterdam-Boston-London-New York-Oxford-Paris-Philadelphia-San Diego-St. Louis}, } @article{Oh-Aizawa/08, AUTHOR = {Oh, Myeongsoo and Aizawa, Kiyoharu}, TITLE = {Large-scale image sensing by a group of smart image sensors}, JOURNAL = {Parallel Computing}, VOLUME = {34}, NUMBER = {12}, PAGES = {710-717}, YEAR = {2008}, EDITOR = {Reed, D.}, PUBLISHER = {Elsevier B.V.}, ADDRESS = {Amsterdam-Boston-London-New York-Oxford-Paris-Philadelphia-San Diego-St. Louis}, } @article{Colombo-Del_Bimbo-Valli/08, AUTHOR = {Colombo, C. and Del Bimbo, A. and Valli, A.}, TITLE = {A real-time full body tracking and humanoid animation system}, JOURNAL = {Parallel Computing}, VOLUME = {34}, NUMBER = {12}, PAGES = {718-726}, YEAR = {2008}, EDITOR = {Reed, D.}, PUBLISHER = {Elsevier B.V.}, ADDRESS = {Amsterdam-Boston-London-New York-Oxford-Paris-Philadelphia-San Diego-St. Louis}, } @article{Isgro-Tegolo/08, AUTHOR = {Isgr{\`{o}}, Francesco and Tegolo, Domenico}, TITLE = {A distributed genetic algorithm for restoration of vertical line scratches}, JOURNAL = {Parallel Computing}, VOLUME = {34}, NUMBER = {12}, PAGES = {727-734}, YEAR = {2008}, EDITOR = {Reed, D.}, PUBLISHER = {Elsevier B.V.}, ADDRESS = {Amsterdam-Boston-London-New York-Oxford-Paris-Philadelphia-San Diego-St. Louis}, } @article{Jonker-Olk-Nicolescu/08, AUTHOR = {Jonker, P.P. and Olk, J.G.E. and Nicolescu, C.}, TITLE = {Distributed bucket processing: A paradigm embedded in a framework for the parallel processing of pixel sets}, JOURNAL = {Parallel Computing}, VOLUME = {34}, NUMBER = {12}, PAGES = {735-746}, YEAR = {2008}, EDITOR = {Reed, D.}, PUBLISHER = {Elsevier B.V.}, ADDRESS = {Amsterdam-Boston-London-New York-Oxford-Paris-Philadelphia-San Diego-St. Louis}, } @article{Grover-Li-Dommel/08, AUTHOR = {Grover, Radhika S. and Li, Qiang and Dommel, H.-P.}, TITLE = {Performance study of data layout schemes for a SAN-based video server}, JOURNAL = {Parallel Computing}, VOLUME = {34}, NUMBER = {12}, PAGES = {747-756}, YEAR = {2008}, EDITOR = {Reed, D.}, PUBLISHER = {Elsevier B.V.}, ADDRESS = {Amsterdam-Boston-London-New York-Oxford-Paris-Philadelphia-San Diego-St. Louis}, } @article{Gamba-Lombardi-Porta/08, AUTHOR = {Gamba, Paolo and Lombardi, Luca and Porta, Marco}, TITLE = {Log-map analysis}, JOURNAL = {Parallel Computing}, VOLUME = {34}, NUMBER = {12}, PAGES = {757-764}, YEAR = {2008}, EDITOR = {Reed, D.}, PUBLISHER = {Elsevier B.V.}, ADDRESS = {Amsterdam-Boston-London-New York-Oxford-Paris-Philadelphia-San Diego-St. Louis}, }