@article{Cantone-Faro-Giaquinta/12,
AUTHOR = {Cantone, Domenico and Faro, Simone and Giaquinta, Emanuele},
TITLE = {A compact representation of nondeterministic (suffix) automata for the bit-parallel approach},
JOURNAL = {Inf.~Comput.},
VOLUME = {213},
PAGES = {3-12},
YEAR = {2012},
EDITOR = {Meyer, Albert R.},
URL = {http://www.sciencedirect.com/science/article/pii/S0890540112000223},
PUBLISHER = {Elsevier B.V.},
ADDRESS = {Amsterdam-Boston-London-New York-Oxford-Paris-Philadelphia-San Diego-San Louis},
}
@article{Schnattinger-Ohlebusch-Gog/12,
AUTHOR = {Schnattinger, Thomas and Ohlebusch, Enno and Gog, Simon},
TITLE = {Bidirectional search in a string with wavelet trees and bidirectional matching statistics},
JOURNAL = {Inf.~Comput.},
VOLUME = {213},
PAGES = {13-22},
YEAR = {2012},
EDITOR = {Meyer, Albert R.},
KEYWORDS = {string matching, bidirectional search, matching statistics},
URL = {http://www.sciencedirect.com/science/article/pii/S0890540112000235},
PUBLISHER = {Elsevier B.V.},
ADDRESS = {Amsterdam-Boston-London-New York-Oxford-Paris-Philadelphia-San Diego-San Louis},
}
@article{Nor-Hermelin-Charlat-Engelstadter-Reuter-Duron-Sagot/12,
AUTHOR = {Nor, Igor and Hermelin, Danny and Charlat, Sylvain and Engelstadter, Jan and Reuter, Max and Duron, Olivier and Sagot, Marie-France},
TITLE = {Mod/Resc Parsimony Inference: Theory and application},
JOURNAL = {Inf.~Comput.},
VOLUME = {213},
PAGES = {23-32},
YEAR = {2012},
EDITOR = {Meyer, Albert R.},
KEYWORDS = {computational biology, biclique edge covering, bipartite graph, boolean matrix, np-completeness, graph theory, fixed-parameter tractability, kernelisation},
URL = {http://www.sciencedirect.com/science/article/pii/S0890540112000247},
PUBLISHER = {Elsevier B.V.},
ADDRESS = {Amsterdam-Boston-London-New York-Oxford-Paris-Philadelphia-San Diego-San Louis},
}
@article{Elberfeld-Tantau/12,
AUTHOR = {Elberfeld, Michael and Tantau, Till},
TITLE = {Phylogeny- and parsimony-based haplotype inference with constraints},
JOURNAL = {Inf.~Comput.},
VOLUME = {213},
PAGES = {33-47},
YEAR = {2012},
EDITOR = {Meyer, Albert R.},
KEYWORDS = {haplotype inference, perfect phylogeny, maximum parsimony, polynomial-time algorithms, fixed-parameter algorithms},
URL = {http://www.sciencedirect.com/science/article/pii/S0890540112000259},
PUBLISHER = {Elsevier B.V.},
ADDRESS = {Amsterdam-Boston-London-New York-Oxford-Paris-Philadelphia-San Diego-San Louis},
}
@article{Valimaki-Ladra-Makinen/12,
AUTHOR = {V{\"a}lim{\"a}ki, Niko and Ladra, Susana and M{\"a}kinen, Veli},
TITLE = {Approximate all-pairs suffix/prefix overlaps},
JOURNAL = {Inf.~Comput.},
VOLUME = {213},
PAGES = {49-58},
YEAR = {2012},
EDITOR = {Meyer, Albert R.},
KEYWORDS = {suffix/prefix matching, approximate pattern matching},
URL = {http://www.sciencedirect.com/science/article/pii/S0890540112000260},
PUBLISHER = {Elsevier B.V.},
ADDRESS = {Amsterdam-Boston-London-New York-Oxford-Paris-Philadelphia-San Diego-San Louis},
}
@article{Montes-Memelli-Ward-Kim-Mitchell-Skiena/12,
AUTHOR = {Montes, Pablo and Memelli, Heraldo and Ward, Charles B. and Kim, Joondong and Mitchell, Joseph S.B. and Skiena, Steven},
TITLE = {Optimizing restriction site placement for synthetic genomes},
JOURNAL = {Inf.~Comput.},
VOLUME = {213},
PAGES = {59-69},
YEAR = {2012},
EDITOR = {Meyer, Albert R.},
KEYWORDS = {synthetic biology, restriction enzyme placement, genome refactoring},
URL = {http://www.sciencedirect.com/science/article/pii/S0890540112000272},
PUBLISHER = {Elsevier B.V.},
ADDRESS = {Amsterdam-Boston-London-New York-Oxford-Paris-Philadelphia-San Diego-San Louis},
}