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Time-course network analysis reveals TNF-
\alpha
can promote G
_{1}
/S transition of cell cycle in vascular endothelial cells
Yang Chen
,
Jin Gu
,
Dan Li
,
Shao Li
Bioinformatics
28
(1), 2012, pp. 1-4
GenomeRing: Alignment visualization based on SuperGenome coordinates
A. Herbig
,
G. Jäger
,
F. Battke
,
K. Nieselt
Bioinformatics
28
(12), 2012, pp. 7-15
Joint stage recognition and anatomical annotation of drosophila gene expression patterns
Xiao Cai
,
Hua Wang
,
Heng Huang
,
Chris Ding
Bioinformatics
28
(12), 2012, pp. 16-24
Improved synapse detection for mGRASP-assisted brain connectivity mapping
Linqing Feng
,
Ting Zhao
,
Jinhyun Kim
Bioinformatics
28
(12), 2012, pp. 25-31
Large-scale motif discovery using DNA Gray code and equiprobable oligomers
Natsuhiro Ichinose
,
Tetsushi Yada
,
Osamu Gotoh
Bioinformatics
28
(1), 2012, pp. 25-31
Correcting for cancer genome size and tumour cell content enables better estimation of copy number alterations from next-generation sequence data
Arief Gusnanto
,
Henry M. Wood
,
Yudi Pawitan
,
Pamela Rabbitts
,
Stefano Berri
Bioinformatics
28
(1), 2012, pp. 40-47
Determining the evolutionary history of gene families
Ryan M. Ames
,
Daniel Money
,
Vikramsinh P. Ghatge
,
Simon Whelan
,
Simon C. Lovell
Bioinformatics
28
(1), 2012, pp. 48-55
Epigenetic priors for identifying active transcription factor binding sites
Gabriel Cuellar-Partida
,
Fabian A. Buske
,
Robert C. McLeay
,
Tom Whitington
,
William Stafford Noble
,
Timothy L. Bailey
Bioinformatics
28
(1), 2012, pp. 56-62
Using Poisson mixed-effects model to quantify transcript-level gene expression in RNA-Seq
Ming Hu
,
Yu Zhu
,
Jeremy M.G. Taylor
,
Jun S. Liu
,
Zhaohui S. Qin
Bioinformatics
28
(1), 2012, pp. 63-68
Novel domain combinations in proteins encoded by chimeric transcripts
Milana Frenkel-Morgenstern
,
Alfonso Valencia
Bioinformatics
28
(12), 2012, pp. 67-74
MoRFpred, a computational tool for sequence-based prediction and characterization of short disorder-to-order transitioning binding regions in proteins
Fatemeh Miri Disfani
,
Wei-Lun Hsu
,
Marcin J. Mizianty
,
Christopher J. Oldfield
,
Bin Xue
,
A. Keith Dunker
,
Vladimir N. Uversky
,
Lukasz Kurgan
Bioinformatics
28
(12), 2012, pp. 75-83
Multifunctional proteins revealed by overlapping clustering in protein interaction network
Emmanuelle Becker
,
Benoît Robisson
,
Charles E. Chapple
,
Alain Guénoche
,
Christine Brun
Bioinformatics
28
(1), 2012, pp. 84-90
Recognition models to predict DNA-binding specificities of homeodomain proteins
Ryan G. Christensen
,
Metewo Selase Enuameh
,
Marcus B. Noyes
,
Michael H. Brodsky
,
Scot A. Wolfe
,
Gary D. Stormo
Bioinformatics
28
(12), 2012, pp. 84-89
Ranking models of transmembrane
\beta
-barrel proteins using Z-coordinate predictions
Sikander Hayat
,
Arne Elofsson
Bioinformatics
28
(12), 2012, pp. 90-96
Expression2Kinases: mRNA profiling linked to multiple upstream regulatory layers
Edward Y. Chen
,
Huilei Xu
,
Simon Gordonov
,
Maribel P. Lim
,
Matthew H. Perkins
,
Avi Ma'ayan
Bioinformatics
28
(1), 2012, pp. 105-111
Ranking of multidimensional drug profiling data by fractional-adjusted bi-partitional scores
Dorit S. Hochbaum
,
Chun-Nan Hsu
,
Yan T. Yang
Bioinformatics
28
(12), 2012, pp. 106-114
Dragon PolyA Spotter: Predictor of poly(A) motifs within human genomic DNA sequences
Manal Kalkatawi
,
Farania Rangkuti
,
Michael Schramm
,
Boris R. Jankovic
,
Allan Kamau
,
Rajesh Chowdhary
,
John A.C. Archer
,
Vladimir B. Bajic
Bioinformatics
28
(1), 2012, pp. 127-129
A robust clustering algorithm for identifying problematic samples in genome-wide association studies
Céline Bellenguez
,
Amy Strange
,
Colin Freeman
,
Wellcome Trust Case Control Consortium
,
Peter Donnelly
,
Chris C.A. Spencer
Bioinformatics
28
(1), 2012, pp. 134-135
cellanimation: An open source MATLAB framework for microscopy assays
Walter Georgescu
,
John P. Wikswo
,
Vito Quaranta
Bioinformatics
28
(1), 2012, pp. 138-139
PubChem promiscuity: A web resource for gathering compound promiscuity data from PubChem
Stephanie A. Canny
,
Yasel Cruz
,
Mark R. Southern
,
Patrick R. Griffin
Bioinformatics
28
(1), 2012, pp. 140-141
AURA: Atlas of UTR Regulatory Activity
E. Dassi
,
A. Malossini
,
A. Re
,
T. Mazza
,
T. Tebaldi
,
L. Caputi
,
A. Quattrone
Bioinformatics
28
(1), 2012, pp. 142-144
Incorporating prior information into association studies
Gregory Darnell
,
Dat Duong
,
Buhm Han
,
Eleazar Eskin
Bioinformatics
28
(12), 2012, pp. 147-153
Corrigendum to ``Automated workflows for accurate mass-based putative metabolite identification in LC/MS-derived metabolomic datasets''
Marie Brown
,
David C. Wedge
,
Royston Goodacre
,
Douglas B. Kell
,
Philip N. Baker
,
Louise C. Kenny
,
Mamas A. Mamas
,
Ludwig Neyses
,
Warwick B. Dunn
Bioinformatics
28
(1), 2012, pp. 149-149
Corrigendum to ``Sensitive and fast mapping of di-base encoded reads''
Farhad Hormozdiari
,
Faraz Hach
,
S. Cenk Sahinalp
,
Evan E. Eichler
,
Can Alkan
Bioinformatics
28
(1), 2012, pp. 150-150
DELISHUS: An efficient and exact algorithm for genome-wide detection of deletion polymorphism in autism
Derek Aguiar
,
Bjarni V. Halldórsson
,
Eric M. Morrow
,
Sorin Istrail
Bioinformatics
28
(12), 2012, pp. 154-162
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