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Technische Universität München
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Computational epigenetics
Christoph Bock
,
Thomas Lengauer
Bioinformatics
24
(1), 2008, pp. 1-10
Annotation of metagenome short reads using proxygenes
Daniel Dalevi
,
Natalia N. Ivanova
,
Konstantinos Mavromatis
,
Sean D. Hooper
,
Ernest Szeto
,
Philip Hugenholtz
,
Nikos C. Kyrpides
,
Victor M. Markowitz
Bioinformatics
24
(16), 2008, pp. 7-13
ProSOM: Core promoter prediction based on unsupervised clustering of DNA physical profiles
Thomas Abeel
,
Yvan Saeys
,
Pierre Rouzé
,
Yves Van de Peer
Bioinformatics
24
(13), 2008, pp. 24-31
Optimal pooling for genome re-sequencing with ultra-high-throughput short-read technologies
Iman Hajirasouliha
,
Fereydoun Hormozdiari
,
S. Cenk Sahinalp
,
Inanc Birol
Bioinformatics
24
(13), 2008, pp. 32-40
Estimation of an in vivo fitness landscape experienced by HIV-1 under drug selective pressure useful for prediction of drug resistance evolution during treatment
K. Deforche
,
R. Camacho
,
K. Van Laethem
,
P. Lemey
,
A. Rambaut
,
Y. Moreau
,
A.-M. Vandamme
Bioinformatics
24
(1), 2008, pp. 34-41
Non-parametric estimation of posterior error probabilities associated with peptides identified by tandem mass spectrometry
Lukas Käll
,
John D. Storey
,
William Stafford Noble
Bioinformatics
24
(16), 2008, pp. 42-48
Towards de novo identification of metabolites by analyzing tandem mass spectra
Sebastian Böcker
,
Florian Rasche
Bioinformatics
24
(16), 2008, pp. 49-55
An environmental perspective on large-scale genome clustering based on metabolic capabilities
Gabi Kastenmüller
,
Johann Gasteiger
,
Hans-Werner Mewes
Bioinformatics
24
(16), 2008, pp. 56-62
A max-margin model for efficient simultaneous alignment and folding of RNA sequences
Chuong B. Do
,
Chuan-Sheng Foo
,
Serafim Batzoglou
Bioinformatics
24
(13), 2008, pp. 68-76
Gaussian process modelling of latent chemical species: Applications to inferring transcription factor activities
Pei Gao
,
Antti Honkela
,
Magnus Rattray
,
Neil D. Lawrence
Bioinformatics
24
(16), 2008, pp. 70-75
Correcting for gene-specific dye bias in DNA microarrays using the method of maximum likelihood
Ryan Kelley
,
Hoda Feizi
,
Trey Ideker
Bioinformatics
24
(1), 2008, pp. 71-77
GlobalANCOVA: Exploration and assessment of gene group effects
Manuela Hummel
,
Reinhard Meister
,
Ulrich Mansmann
Bioinformatics
24
(1), 2008, pp. 78-85
Protein structure alignment considering phenotypic plasticity
Gergely Csaba
,
Fabian Birzele
,
Ralf Zimmer
Bioinformatics
24
(16), 2008, pp. 98-104
Fast and accurate identification of semi-tryptic peptides in shotgun proteomics
Pedro Alves
,
Randy J. Arnold
,
David E. Clemmer
,
Yixue Li
,
James P. Reilly
,
Quanhu Sheng
,
Haixu Tang
,
Zhiyin Xun
,
Rong Zeng
,
Predrag Radivojac
Bioinformatics
24
(1), 2008, pp. 102-109
Monte Carlo feature selection for supervised classification
Michaƚ Dramiński
,
Alvaro Rada-Iglesias
,
Stefan Enroth
,
Claes Wadelius
,
Jacek Koronacki
,
Jan Komorowski
Bioinformatics
24
(1), 2008, pp. 110-117
RNA structure alignment by a unit-vector approach
Emidio Capriotti
,
Marc A. Marti-Renom
Bioinformatics
24
(16), 2008, pp. 112-118
Kernel approaches for genic interaction extraction
Seonho Kim
,
Juntae Yoon
,
Jihoon Yang
Bioinformatics
24
(1), 2008, pp. 118-126
Inter-species normalization of gene mentions with GNAT
Jörg Hakenberg
,
Conrad Plake
,
Robert Leaman
,
Michael Schroeder
,
Graciela Gonzalez
Bioinformatics
24
(16), 2008, pp. 126-132
GEIGER: Investigating evolutionary radiations
Luke J. Harmon
,
Jason T. Weir
,
Chad D. Brock
,
Richard E. Glor
,
Wendell Challenger
Bioinformatics
24
(1), 2008, pp. 129-131
The multiple gene duplication problem revisited
Mukul S. Bansal
,
Oliver Eulenstein
Bioinformatics
24
(13), 2008, pp. 132-138
Analysis of segmental duplications via duplication distance
Crystal L. Kahn
,
Benjamin J. Raphael
Bioinformatics
24
(16), 2008, pp. 133-138
vbmp: Variational Bayesian Multinomial Probit Regression for multi-class classification in R
Nicola Lama
,
Mark Girolami
Bioinformatics
24
(1), 2008, pp. 135-136
A fast and flexible method for the segmentation of aCGH data
Erez Ben-Yaacov
,
Yonina C. Eldar
Bioinformatics
24
(16), 2008, pp. 139-145
MetaNetter: Inference and visualization of high-resolution metabolomic networks
Fabien Jourdan
,
Rainer Breitling
,
Michael P. Barrett
,
David Gilbert
Bioinformatics
24
(1), 2008, pp. 143-145
HapCUT: An efficient and accurate algorithm for the haplotype assembly problem
Vikas Bansal
,
Vineet Bafna
Bioinformatics
24
(16), 2008, pp. 153-159
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