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Technische Universität München
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PilZ domain is part of the bacterial c-di-GMP binding protein
Dorit Amikam
,
Michael Y. Galperin
Bioinformatics
22
(1), 2006, pp. 3-6
Automatic clustering of orthologs and inparalogs shared by multiple proteomes
Andrey Alexeyenko
,
Ivica Tamas
,
Gang Liu
,
Erik L.L. Sonnhammer
Bioinformatics
22
(14), 2006, pp. 9-15
DynaPred: A structure and sequence based method for the prediction of MHC class I binding peptide sequences and conformations
Iris Antes
,
Shirley W.I. Siu
,
Thomas Lengauer
Bioinformatics
22
(14), 2006, pp. 16-24
A generic motif discovery algorithm for sequential data
Kyle L. Jensen
,
Mark P. Styczynski
,
Isidore Rigoutsos
,
Gregory N. Stephanopoulos
Bioinformatics
22
(1), 2006, pp. 21-28
ProfilePSTMM: Capturing tree-structure motifs in carbohydrate sugar chains
Kiyoko F. Aoki-Kinoshita
,
Nobuhisa Ueda
,
Hiroshi Mamitsuka
,
Minoru Kanehisa
Bioinformatics
22
(14), 2006, pp. 25-34
Accurate anchoring alignment of divergent sequences
Weichun Huang
,
David M. Umbach
,
Leping Li
Bioinformatics
22
(1), 2006, pp. 29-34
The iRMSD: A local measure of sequence alignment accuracy using structural information
Fabrice Armougom
,
Sébastien Moretti
,
Vladimir Keduas
,
Cedric Notredame
Bioinformatics
22
(14), 2006, pp. 35-39
A model-based approach for mining membrane protein crystallization trials
Sitaram Asur
,
Pichai Raman
,
Matthew Eric Otey
,
Srinivasan Parthasarathy
Bioinformatics
22
(14), 2006, pp. 40-48
Inferring functional information from domain co-evolution
Yohan Kim
,
Mehmet Koyutürk
,
Umut Topkara
,
Ananth Grama
,
Shankar Subramaniam
Bioinformatics
22
(1), 2006, pp. 40-49
Integrating structured biological data by Kernel Maximum Mean Discrepancy
Karsten M. Borgwardt
,
Arthur Gretton
,
Malte J. Rasch
,
Hans-Peter Kriegel
,
Bernhard Schölkopf
,
Alex J. Smola
Bioinformatics
22
(14), 2006, pp. 49-57
Using a calibration experiment to assess gene-specific information: Full Bayesian and empirical Bayesian models for two-channel microarray data
Marta Blangiardo
,
Simona Toti
,
Betti Giusti
,
Rosanna Abbate
,
Alberto Magi
,
Filippo Poggi
,
Luciana Rossi
,
Francesca Torricelli
,
Annibale Biggeri
Bioinformatics
22
(1), 2006, pp. 50-57
AClAP, Autonomous hierarchical agglomerative Cluster Analysis based protocol to partition conformational datasets
Giovanni Bottegoni
,
Walter Rocchia
,
Maurizio Recanatini
,
Andrea Cavalli
Bioinformatics
22
(14), 2006, pp. 58-65
Robust multi-scale clustering of large DNA microarray datasets with the consensus algorithm
Thomas Grotkjær
,
Ole Winther
,
Birgitte Regenberg
,
Jens Nielsen
,
Lars Kai Hansen
Bioinformatics
22
(1), 2006, pp. 58-67
A top-level ontology of functions and its application in the Open Biomedical Ontologies
Patryk Burek
,
Robert Hoehndorf
,
Frank Loebe
,
Johann Visagie
,
Heinrich Herre
,
Janet Kelso
Bioinformatics
22
(14), 2006, pp. 66-73
Comparative footprinting of DNA-binding proteins
Bruno Contreras-Moreira
,
Julio Collado-Vides
Bioinformatics
22
(14), 2006, pp. 74-80
A probabilistic approach to protein backbone tracing in electron density maps
Frank DiMaio
,
Jude Shavlik
,
George N. Phillips
Bioinformatics
22
(14), 2006, pp. 81-89
CONTRAfold: RNA secondary structure prediction without physics-based models
Chuong B. Do
,
Daniel A. Woods
,
Serafim Batzoglou
Bioinformatics
22
(14), 2006, pp. 90-98
springScape: Visualisation of microarray and contextual bioinformatic data using spring embedding and an ''information landscape''
Timothy M.D. Ebbels
,
Bernard F. Buxton
,
David T. Jones
Bioinformatics
22
(14), 2006, pp. 99-107
Analysis of sample set enrichment scores: Assaying the enrichment of sets of genes for individual samples in genome-wide expression profiles
Elena Edelman
,
Alessandro Porrello
,
Justin Guinney
,
Bala Balakumaran
,
Andrea Bild
,
Phillip G. Febbo
,
Sayan Mukherjee
Bioinformatics
22
(14), 2006, pp. 108-116
Dense subgraph computation via stochastic search: Application to detect transcriptional modules
Logan Everett
,
Li-San Wang
,
Sridhar Hannenhalli
Bioinformatics
22
(14), 2006, pp. 117-123
Nexplorer: Phylogeny-based exploration of sequence family data
Vivek Gopalan
,
Wei-Gang Qiu
,
Michael Z. Chen
,
Arlin Stoltzfus
Bioinformatics
22
(1), 2006, pp. 120-121
ClaNC: Point-and-click software for classifying microarrays to nearest centroids
Alan R. Dabney
Bioinformatics
22
(1), 2006, pp. 122-123
Dynamical analysis of a generic Boolean model for the control of the mammalian cell cycle
Adrien Fauré
,
Aurélien Naldi
,
Claudine Chaouiya
,
Denis Thieffry
Bioinformatics
22
(14), 2006, pp. 124-131
libSRES: A C library for stochastic ranking evolution strategy for parameter estimation
Xinglai Ji
,
Ying Xu
Bioinformatics
22
(1), 2006, pp. 124-126
''Protein Peeling'': An approach for splitting a 3D Protein structure into compact fragments
Jean-Christophe Gelly
,
Alexandre G. de Brevern
,
Serge Hazout
Bioinformatics
22
(2), 2006, pp. 129-133
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