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Technische Universität München
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eF-site and PDBjViewer: Database and viewer for protein functional sites
Kengo Kinoshita
,
Haruki Nakamura
Bioinformatics
20
(8), 2004, pp. 1329-1330
A hint to search for metalloproteins in gene banks
Claudia Andreini
,
Ivano Bertini
,
Antonio Rosato
Bioinformatics
20
(9), 2004, pp. 1373-1380
Analysis of disturbed images
Gerhard Kauer
,
Helmut Blöcker
Bioinformatics
20
(9), 2004, pp. 1381-1387
Analysis of variance components in gene expression data
James J. Chen
,
Robert R. Delongchamp
,
Chen-An Tsai
,
Huey-miin Hsueh
,
Frank Sistare
,
Karol L. Thompson
,
Varsha G. Desai
,
James C. Fuscoe
Bioinformatics
20
(9), 2004, pp. 1436-1446
CNplot: Visualizing pre-clustered networks
Nizar N. Batada
Bioinformatics
20
(9), 2004, pp. 1455-1456
GeneAnnot: Comprehensive two-way linking between oligonucleotide array probesets and GeneCards genes
Vered Chalifa-Caspi
,
Itai Yanai
,
Ron Ophir
,
Naomi Rosen
,
Michael Shmoish
,
Hila Benjamin-Rodrig
,
Maxim Shklar
,
Tsippi Iny Stein
,
Orit Shmueli
,
Marilyn Safran
,
Doron Lancet
Bioinformatics
20
(9), 2004, pp. 1457-1458
NetAffx Gene Ontology Mining Tool: A visual approach for microarray data analysis
Jill Cheng
,
Shaw Sun
,
Adam Tracy
,
Earl Hubbell
,
Joseph Morris
,
Venu Valmeekam
,
Andrew Kimbrough
,
Melissa S. Cline
,
Guoying Liu
,
Ron Shigeta
,
David Kulp
,
Michael A. Siani-Rose
Bioinformatics
20
(9), 2004, pp. 1462-1463
GOstat: Find statistically overrepresented Gene Ontologies within a group of genes
Tim Beißbarth
,
Terence P. Speed
Bioinformatics
20
(9), 2004, pp. 1464-1465
TANDEM: Matching proteins with tandem mass spectra
Robertson Craig
,
Ronald C. Beavis
Bioinformatics
20
(9), 2004, pp. 1466-1467
Site2genome: Locating short DNA sequences in whole genomes
Martin C. Frith
,
Anason S. Halees
,
Ulla Hansen
,
Zhiping Weng
Bioinformatics
20
(9), 2004, pp. 1468-1469
ToPNet - An application for interactive analysis of expression data and biological networks
Daniel Hanisch
,
Florian Sohler
,
Ralf Zimmer
Bioinformatics
20
(9), 2004, pp. 1470-1471
WebSIDD: Server for predicting stress-induced duplex destabilized (SIDD) sites in superhelical DNA
Chengpeng Bi
,
Craig J. Benham
Bioinformatics
20
(9), 2004, pp. 1477-1479
Regional and time-resolved mutation patterns of the human genome
Peter F. Arndt
,
Terence Hwa
Bioinformatics
20
(10), 2004, pp. 1482-1485
Using convex hulls to extract interaction interfaces from known structures
Panos Dafas
,
Dan Bolser
,
Jacek Gomoluch
,
Jong Park
,
Michael Schroeder
Bioinformatics
20
(10), 2004, pp. 1486-1490
Threshold extraction in metabolite concentration data
A. Flöter
,
J. Nicolas
,
T. Schaub
,
J. Selbig
Bioinformatics
20
(10), 2004, pp. 1491-1494
Conserved RNA secondary structures in viral genomes: A survey
I.L. Hofacker
,
P.F. Stadler
,
R.R. Stocsits
Bioinformatics
20
(10), 2004, pp. 1495-1499
Gene expression analysis on biochemical networks using the Potts spin model
Rainer König
,
Roland Eils
Bioinformatics
20
(10), 2004, pp. 1500-1505
Recognition of multiple patterns in unaligned sets of sequences: Comparison of kernel clustering method with other methods
A. Kel
,
Y. Tikunov
,
N. Voss
,
E. Wingender
Bioinformatics
20
(10), 2004, pp. 1512-1516
Evaluation and optimization of clustering in gene expression data analysis
A. Fazel Famili
,
Ganming Liu
,
Ziying Liu
Bioinformatics
20
(10), 2004, pp. 1535-1545
Combining partial order alignment and progressive multiple sequence alignment increases alignment speed and scalability to very large alignment problems
Catherine Grasso
,
Christopher Lee
Bioinformatics
20
(10), 2004, pp. 1546-1556
BioOptimizer: A Bayesian scoring function approach to motif discovery
Shane T. Jensen
,
Jun S. Liu
Bioinformatics
20
(10), 2004, pp. 1557-1564
A perturbation-based method for calculating explicit likelihood of evolutionary co-variance in multiple sequence alignments
John P. Dekker
,
Anthony Fodor
,
Richard W. Aldrich
,
Gary Yellen
Bioinformatics
20
(10), 2004, pp. 1565-1572
An object model and database for functional genomics
Andrew Jones
,
Ela Hunt
,
Jonathan M. Wastling
,
Angel Pizarro
,
Christian J., Jr. Stoeckert
Bioinformatics
20
(10), 2004, pp. 1583-1590
A graph theoretical approach for predicting common RNA secondary structure motifs including pseudoknots in unaligned sequences
Yongmei Ji
,
Xing Xu
,
Gary D. Stormo
Bioinformatics
20
(10), 2004, pp. 1591-1602
Protein secondary structure: Entropy, correlations and prediction
Gavin E. Crooks
,
Steven E. Brenner
Bioinformatics
20
(10), 2004, pp. 1603-1611
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