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Technische Universität München
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Improved pairwise alignments of proteins in the Twilight Zone using local structure predictions
Yao-ming Huang
,
Christopher Bystroff
Bioinformatics
22
(4), 2006, pp. 413-422
A simple method to predict protein-binding from aligned sequences - Application to MHC superfamily and
\beta
2-microglobulin
Elodie Duprat
,
Marie-Paule Lefranc
,
Olivier Gascuel
Bioinformatics
22
(4), 2006, pp. 453-459
SimShift: Identifying structural similarities from NMR chemical shifts
Simon W. Ginzinger
,
Johannes Fischer
Bioinformatics
22
(4), 2006, pp. 460-465
MiGenes: A searchable interspecies database of mitochondrial proteins curated using gene ontology annotation
Siddhartha Basu
,
Erich Bremer
,
Chun Zhou
,
Daniel F. Bogenhagen
Bioinformatics
22
(4), 2006, pp. 485-492
SEAN: SNP prediction and display program utilizing EST sequence clusters
Derek Huntley
,
Angela Baldo
,
Saurabh Johri
,
Marek Sergot
Bioinformatics
22
(4), 2006, pp. 495-496
GenoMiner: A tool for genome-wide search of coding and non-coding conserved sequence tags
Tiziana Castrignanò
,
Paolo D'Onorio De Meo
,
Giorgio Grillo
,
Sabino Liuni
,
Flavio Mignone
,
Ivano Giuseppe Talamo
,
Graziano Pesole
Bioinformatics
22
(4), 2006, pp. 497-499
Multiple Alignment of protein structures and sequences for VMD
John Eargle
,
Dan Wright
,
Zaida Luthey-Schulten
Bioinformatics
22
(4), 2006, pp. 504-506
EDGE: Extraction and analysis of differential gene expression
Jeffrey T. Leek
,
Eva Monsen
,
Alan R. Dabney
,
John D. Storey
Bioinformatics
22
(4), 2006, pp. 507-508
FLOSS: Flexible ordered subset analysis for linkage mapping of complex traits
B.L. Browning
Bioinformatics
22
(4), 2006, pp. 512-513
Bayesian classifiers for detecting HGT using fixed and variable order Markov models of genomic signatures
Daniel Dalevi
,
Devdatt Dubhashi
,
Malte Hermansson
Bioinformatics
22
(5), 2006, pp. 517-522
IWoCS: Analyzing ribosomal intergenic transcribed spacers configuration and taxonomic relationships
Giuseppe D'Auria
,
Ravindra Pushker
,
Francisco Rodriguez-Valera
Bioinformatics
22
(5), 2006, pp. 527-531
A regularized discriminative model for the prediction of protein-peptide interactions
Wolfgang P. Lehrach
,
Dirk Husmeier
,
Christopher K.I. Williams
Bioinformatics
22
(5), 2006, pp. 532-540
Equivalent binding sites reveal convergently evolved interaction motifs
Andreas Henschel
,
Wan Kyu Kim
,
Michael Schroeder
Bioinformatics
22
(5), 2006, pp. 550-555
A multi-step approach to time series analysis and gene expression clustering
R. Amato
,
A. Ciaramella
,
N. Deniskina
,
C. Del Mondo
,
D. di Bernardo
,
C. Donalek
,
G. Longo
,
G. Mangano
,
G. Miele
,
G. Raiconi
,
A. Staiano
,
R. Tagliaferri
Bioinformatics
22
(5), 2006, pp. 589-596
BioContrasts: Extracting and exploiting protein-protein contrastive relations from biomedical literature
Jung-jae Kim
,
Zhuo Zhang
,
Jong C. Park
,
See-Kiong Ng
Bioinformatics
22
(5), 2006, pp. 597-605
Local RNA base pairing probabilities in large sequences
Stephan H. Bernhart
,
Ivo L. Hofacker
,
Peter F. Stadler
Bioinformatics
22
(5), 2006, pp. 614-615
BioShell - A package of tools for structural biology computations
Dominik Gront
,
Andrzej Kolinski
Bioinformatics
22
(5), 2006, pp. 621-622
TAMAL: An integrated approach to choosing SNPs for genetic studies of human complex traits
Bradley M. Hemminger
,
Billy Saelim
,
Patrick F. Sullivan
Bioinformatics
22
(5), 2006, pp. 626-627
Tools for the SBML Community
Colin S. Gillespie
,
Darren J. Wilkinson
,
Carole J. Proctor
,
Daryl P. Shanley
,
Richard J. Boys
,
Thomas B.L. Kirkwood
Bioinformatics
22
(5), 2006, pp. 628-629
VIS-O-BAC: Exploratory visualization of functional genome studies from bacteria
Guido Dieterich
,
Uwe Kärst
,
Jürgen Wehland
,
Lothar Jänsch
Bioinformatics
22
(5), 2006, pp. 630-631
ProteomeCommons.org JAF: Reference information and tools for proteomics
J.A. Falkner
,
J.W. Falkner
,
P.C. Andrews
Bioinformatics
22
(5), 2006, pp. 632-633
MZmine: Toolbox for processing and visualization of mass spectrometry based molecular profile data
Mikko Katajamaa
,
Jarkko Miettinen
,
Matej Ores̑ic̑
Bioinformatics
22
(5), 2006, pp. 634-636
Automatic extension of Gene Ontology with flexible identification of candidate terms
Jin-Bok Lee
,
Jung-jae Kim
,
Jong C. Park
Bioinformatics
22
(6), 2006, pp. 665-670
Haloferax volcanii PitA: An example of functional interaction between the Pfam chlorite dismutase and antibiotic biosynthesis monooxygenase families?
Elizabeta Bab-Dinitz
,
Hagay Shmuely
,
Julie Maupin-Furlow
,
Jerry Eichler
,
Boaz Shaanan
Bioinformatics
22
(6), 2006, pp. 671-675
Short fuzzy tandem repeats in genomic sequences, identification, and possible role in regulation of gene expression
Valentina Boeva
,
Mireille Regnier
,
Dmitri Papatsenko
,
Vsevolod Makeev
Bioinformatics
22
(6), 2006, pp. 676-684
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