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Technische Universität München
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arrayQualityMetrics - A bioconductor package for quality assessment of microarray data
Audrey Kauffmann
,
Robert Gentleman
,
Wolfgang Huber
Bioinformatics
25
(3), 2009, pp. 415-416
SIMoNe: Statistical Inference for MOdular NEtworks
Julien Chiquet
,
Alexander Smith
,
Gilles Grasseau
,
Catherine Matias
,
Christophe Ambroise
Bioinformatics
25
(3), 2009, pp. 417-418
rHVDM: An R package to predict the activity and targets of a transcription factor
M. Barenco
,
E. Papouli
,
S. Shah
,
D. Brewer
,
C.J. Miller
,
M. Hubank
Bioinformatics
25
(3), 2009, pp. 419-420
Biodiversity informatics: Automated approaches for documenting global biodiversity patterns and processes
Robert Guralnick
,
Andrew Hill
Bioinformatics
25
(4), 2009, pp. 421-428
Masking residues using context-specific evolutionary conservation significantly improves short linear motif discovery
Norman E. Davey
,
Denis C. Shields
,
Richard J. Edwards
Bioinformatics
25
(4), 2009, pp. 443-450
Properties and identification of human protein drug targets
Tala M. Bakheet
,
Andrew J. Doig
Bioinformatics
25
(4), 2009, pp. 451-457
Prediction of RNA secondary structure using generalized centroid estimators
Michiaki Hamada
,
Hisanori Kiryu
,
Kengo Sato
,
Toutai Mituyama
,
Kiyoshi Asai
Bioinformatics
25
(4), 2009, pp. 465-473
FastMap: Fast eQTL mapping in homozygous populations
Daniel M. Gatti
,
Andrey A. Shabalin
,
Tieu-Chong Lam
,
Fred A. Wright
,
Ivan Rusyn
,
Andrew B. Nobel
Bioinformatics
25
(4), 2009, pp. 482-489
Module networks revisited: Computational assessment and prioritization of model predictions
Anagha Joshi
,
Riet De Smet
,
Kathleen Marchal
,
Yves Van de Peer
,
Tom Michoel
Bioinformatics
25
(4), 2009, pp. 490-496
SCARF: Maximizing next-generation EST assemblies for evolutionary and population genomic analyses
Michael S. Barker
,
Katrina M. Dlugosch
,
A. Chaitanya C. Reddy
,
Sarah N. Amyotte
,
Loren H. Rieseberg
Bioinformatics
25
(4), 2009, pp. 535-536
PuMA: Bayesian analysis of \underlinepartitioned (and \underlineunpartitioned) \underlinemodel \underlineadequacy
Jeremy M. Brown
,
Robert ElDabaje
Bioinformatics
25
(4), 2009, pp. 537-538
DichroCalc - Circular and linear dichroism online
Benjamin M. Bulheller
,
Jonathan D. Hirst
Bioinformatics
25
(4), 2009, pp. 539-540
SAFEGUI: Resampling-based tests of categorical significance in gene expression data made easy
Daniel M. Gatti
,
Myroslav Sypa
,
Ivan Rusyn
,
Fred A. Wright
,
William T. Barry
Bioinformatics
25
(4), 2009, pp. 541-542
BioCichlid: Central dogma-based 3D visualization system of time-course microarray data on a hierarchical biological network
Ryosuke R. Ishiwata
,
Masaki S. Morioka
,
Soichi Ogishima
,
Hiroshi Tanaka
Bioinformatics
25
(4), 2009, pp. 543-544
MOTIFATOR: Detection and characterization of regulatory motifs using prokaryote transcriptome data
Evert-Jan Blom
,
Jos B.T.M. Roerdink
,
Oscar P. Kuipers
,
Sacha A.F.T. van Hijum
Bioinformatics
25
(4), 2009, pp. 550-551
Correcting for ascertainment bias in the inference of population structure
Gilles Guillot
,
Matthieu Foll
Bioinformatics
25
(4), 2009, pp. 552-554
A novel method for large tree visualization
Jeff Heard
,
William Kaufmann
,
Xiaojun Guan
Bioinformatics
25
(4), 2009, pp. 557-558
A new cis-acting regulatory element driving gene expression in the zebrafish pineal gland
Shahar Alon
,
Eli Eisenberg
,
Jasmine Jacob-Hirsch
,
Gideon Rechavi
,
Gad Vatine
,
Reiko Toyama
,
Steven L. Coon
,
David C. Klein
,
Yoav Gothilf
Bioinformatics
25
(5), 2009, pp. 559-562
Host-parasite relations of bacteria and phages can be unveiled by Oligostickiness, a measure of relaxed sequence similarity
Shamim Ahmed
,
Ayumu Saito
,
Miho Suzuki
,
Naoto Nemoto
,
Koichi Nishigaki
Bioinformatics
25
(5), 2009, pp. 563-570
Sequence-based prediction of protein interaction sites with an integrative method
Xue-wen Chen
,
Jong Cheol Jeong
Bioinformatics
25
(5), 2009, pp. 585-591
A hierarchical model for incomplete alignments in phylogenetic inference
Fuxia Cheng
,
Stefanie Hartmann
,
Mayetri Gupta
,
Joseph G. Ibrahim
,
Todd J. Vision
Bioinformatics
25
(5), 2009, pp. 592-598
Fragment-based identification of druggable ``hot spots'' of proteins using Fourier domain correlation techniques
Ryan Brenke
,
Dima Kozakov
,
Gwo-Yu Chuang
,
Dmitri Beglov
,
David Hall
,
Melissa R. Landon
,
Carla Mattos
,
Sandor Vajda
Bioinformatics
25
(5), 2009, pp. 621-627
Biomarker discovery in MALDI-TOF serum protein profiles using discrete wavelet transformation
Theodore Alexandrov
,
Jens Decker
,
Bart Mertens
,
Andre M. Deelder
,
Rob A.E.M. Tollenaar
,
Peter Maass
,
Herbert Thiele
Bioinformatics
25
(5), 2009, pp. 643-649
SNPnexus: A web database for functional annotation of newly discovered and public domain single nucleotide polymorphisms
Claude Chelala
,
Arshad Khan
,
Nicholas R. Lemoine
Bioinformatics
25
(5), 2009, pp. 655-661
Multiperm: Shuffling multiple sequence alignments while approximately preserving dinucleotide frequencies
Parvez Anandam
,
Elfar Torarinsson
,
Walter L. Ruzzo
Bioinformatics
25
(5), 2009, pp. 668-669
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