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Technische Universität München
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An exome sequencing pipeline for identifying and genotyping common CNVs associated with disease with application to psoriasis
Lachlan J.M. Coin
,
Dandan Cao
,
Jingjing Ren
,
Xianbo Zuo
,
Liangdan Sun
,
Sen Yang
,
Xuejun Zhang
,
Yong Cui
,
Yingrui Li
,
Xin Jin
,
Jun Wang
Bioinformatics
28
(18), 2012, pp. 370-374
Metscape 2 bioinformatics tool for the analysis and visualization of metabolomics and gene expression data
Alla Karnovsky
,
Terry Weymouth
,
Tim Hull
,
V. Glenn Tarcea
,
Giovanni Scardoni
,
Carlo Laudanna
,
Maureen A. Sartor
,
Kathleen A. Stringer
,
H.V. Jagadish
,
Charles Burant
,
Brian Athey
,
Gilbert S. Omenn
Bioinformatics
28
(3), 2012, pp. 373-380
Minimal cut sets in a metabolic network are elementary modes in a dual network
Kathrin Ballerstein
,
Axel von Kamp
,
Steffen Klamt
,
Utz-Uwe Haus
Bioinformatics
28
(3), 2012, pp. 381-387
Evolution of gene neighborhoods within reconciled phylogenies
S`everine Bérard
,
Coralie Gallien
,
Bastien Boussau
,
Gergely J. Szöllŏsi
,
Vincent Daubin
,
Eric Tannier
Bioinformatics
28
(18), 2012, pp. 382-388
Uncovering the co-evolutionary network among prokaryotic genes
Ofir Cohen
,
Haim Ashkenazy
,
David Burstein
,
Tal Pupko
Bioinformatics
28
(18), 2012, pp. 389-394
Genomic context analysis reveals dense interaction network between vertebrate ultraconserved non-coding elements
Slavica Dimitrieva
,
Philipp Bucher
Bioinformatics
28
(18), 2012, pp. 395-401
Integrating human and murine anatomical gene expression data for improved comparisons
Natalia Jiménez-Lozano
,
Joan Segura
,
José Ramón Macías
,
Juanjo Vega
,
José María Carazo
Bioinformatics
28
(3), 2012, pp. 397-402
GenomeRunner: Automating genome exploration
Mikhail G. Dozmorov
,
Lukas R. Cara
,
Cory B. Giles
,
Jonathan D. Wren
Bioinformatics
28
(3), 2012, pp. 419-420
Control-FREEC: A tool for assessing copy number and allelic content using next-generation sequencing data
Valentina Boeva
,
Tatiana Popova
,
Kevin Bleakley
,
Pierre Chiche
,
Julie Cappo
,
Gudrun Schleiermacher
,
Isabelle Janoueix-Lerosey
,
Olivier Delattre
,
Emmanuel Barillot
Bioinformatics
28
(3), 2012, pp. 423-425
Side-chain rotamer changes upon ligand binding: Common, crucial, correlate with entropy and rearrange hydrogen bonding
Francis Gaudreault
,
Matthieu Chartier
,
Rafael Najmanovich
Bioinformatics
28
(18), 2012, pp. 423-430
A structure-based protocol for learning the family-specific mechanisms of membrane-binding domains
Morten Källberg
,
Nitin Bhardwaj
,
Robert Langlois
,
Hui Lu
Bioinformatics
28
(18), 2012, pp. 431-437
SitePainter: A tool for exploring biogeographical patterns
Antonio Gonzalez
,
Jesse Stombaugh
,
Christian L. Lauber
,
Noah Fierer
,
Rob Knight
Bioinformatics
28
(3), 2012, pp. 436-438
GWAtoolbox: An R package for fast quality control and handling of genome-wide association studies meta-analysis data
Christian Fuchsberger
,
Daniel Taliun
,
Peter P. Pramstaller
,
Cristian Pattaro
,
on behalf of the CKDGen consortium
Bioinformatics
28
(3), 2012, pp. 444-445
PathVar: Analysis of gene and protein expression variance in cellular pathways using microarray data
Enrico Glaab
,
Reinhard Schneider
Bioinformatics
28
(3), 2012, pp. 446-447
EnrichNet: Network-based gene set enrichment analysis
Enrico Glaab
,
Anaïs Baudot
,
Natalio Krasnogor
,
Reinhard Schneider
,
Alfonso Valencia
Bioinformatics
28
(18), 2012, pp. 451-457
The role of miRNAs in complex formation and control
Wilson Wen Bin Goh
,
Hirotaka Oikawa
,
Judy Chia Ghee Sng
,
Marek Sergot
,
Limsoon Wong
Bioinformatics
28
(4), 2012, pp. 453-456
Identifying small interfering RNA loci from high-throughput sequencing data
Thomas J. Hardcastle
,
Krystyna A. Kelly
,
David C. Baulcombe
Bioinformatics
28
(4), 2012, pp. 457-463
LocTree2 predicts localization for all domains of life
Tatyana Goldberg
,
Tobias Hamp
,
Burkhard Rost
Bioinformatics
28
(18), 2012, pp. 458-465
Artemis: An integrated platform for visualization and analysis of high-throughput sequence-based experimental data
Tim Carver
,
Simon R. Harris
,
Matthew Berriman
,
Julian Parkhill
,
Jacqueline A. McQuillan
Bioinformatics
28
(4), 2012, pp. 464-469
MotEvo: Integrated Bayesian probabilistic methods for inferring regulatory sites and motifs on multiple alignments of DNA sequences
Phil Arnold
,
Ionas Erb
,
Mikhail Pachkov
,
Nacho Molina
,
Erik van Nimwegen
Bioinformatics
28
(4), 2012, pp. 487-494
Measuring the distance between multiple sequence alignments
Benjamin P. Blackburne
,
Simon Whelan
Bioinformatics
28
(4), 2012, pp. 495-502
Fast large-scale clustering of protein structures using Gauss integrals
Tim Harder
,
Mikael Borg
,
Wouter Boomsma
,
Peter Rgen
,
Thomas Hamelryck
Bioinformatics
28
(4), 2012, pp. 510-515
BOCTOPUS: Improved topology prediction of transmembrane
\beta
barrel proteins
Sikander Hayat
,
Arne Elofsson
Bioinformatics
28
(4), 2012, pp. 516-522
Reveal
- Visual eQTL analytics
Günter Jäger
,
Florian Battke
,
Kay Nieselt
Bioinformatics
28
(18), 2012, pp. 542-548
Optimal structural inference of signaling pathways from unordered and overlapping gene sets
Lipi R. Acharya
,
Thair Judeh
,
Guangdi Wang
,
Dongxiao Zhu
Bioinformatics
28
(4), 2012, pp. 546-556
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