Fakultät für Informatik
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Technische Universität München
Lehrstuhl für Effiziente Algorithmen
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Suche: Journal=Bioinformatics AND Volume=28
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Feature-based classifiers for somatic mutation detection in tumour-normal paired sequencing data
Jiarui Ding
,
Ali Bashashati
,
Andrew Roth
,
Arusha Oloumi
,
Kane Tse
,
Thomas Zeng
,
Gholamreza Haffari
,
Martin Hirst
,
Marco A. Marra
,
Anne Condon
,
Samuel Aparicio
,
Sohrab P. Shah
Bioinformatics
28
(2), 2012, pp. 167-175
Xenome - A tool for classifying reads from xenograft samples
Thomas Conway
,
Jeremy Wazny
,
Andrew Bromage
,
Martin Tymms
,
Dhanya Sooraj
,
Elizabeth D. Williams
,
Bryan Beresford-Smith
Bioinformatics
28
(12), 2012, pp. 172-178
Inferring sequence regions under functional divergence in duplicate genes
Yi-Fei Huang
,
G. Brian Golding
Bioinformatics
28
(2), 2012, pp. 176-183
PSICOV: Precise structural contact prediction using sparse inverse covariance estimation on large multiple sequence alignments
David T. Jones
,
Daniel W.A. Buchan
,
Domenico Cozzetto
,
Massimiliano Pontil
Bioinformatics
28
(2), 2012, pp. 184-190
Fast computation of minimum hybridization networks
Benjamin Albrecht
,
Celine Scornavacca
,
Alberto Cenci
,
Daniel H. Huson
Bioinformatics
28
(2), 2012, pp. 191-197
Weighted pooling - Practical and cost-effective techniques for pooled high-throughput sequencing
David Golan
,
Yaniv Erlich
,
Saharon Rosset
Bioinformatics
28
(12), 2012, pp. 197-206
Identification of context-specific gene regulatory networks with GEMULA - Gene Expression modeling using LAsso
Geert Geeven
,
Ronald E. van Kesteren
,
August B. Smit
,
Mathisca C.M. de Gunst
Bioinformatics
28
(2), 2012, pp. 214-221
Identification of sequence-structure RNA binding motifs for SELEX-derived aptamers
Jan Hoinka
,
Elena Zotenko
,
Adam Friedman
,
Zuben E. Sauna
,
Teresa M. Przytycka
Bioinformatics
28
(12), 2012, pp. 215-223
Modelling time course gene expression data with finite mixtures of linear additive models
Bettina Grün
,
Theresa Scharl
,
Friedrich Leisch
Bioinformatics
28
(2), 2012, pp. 222-228
GraphClust: Alignment-free structural clustering of local RNA secondary structures
Steffen Heyne
,
Fabrizio Costa
,
Dominic Rose
,
Rolf Backofen
Bioinformatics
28
(12), 2012, pp. 224-232
Data-driven information retrieval in heterogeneous collections of transcriptomics data links SIM2s to malignant pleural mesothelioma
José Caldas
,
Nils Gehlenborg
,
Eeva Kettunen
,
Ali Faisal
,
Mikko Rönty
,
Andrew G. Nicholson
,
Sakari Knuutila
,
Alvis Brazma
,
Samuel Kaski
Bioinformatics
28
(2), 2012, pp. 246-253
Lineage-based identification of cellular states and expression programs
Tatsunori Hashimoto
,
Tommi Jaakkola
,
Richard Sherwood
,
Esteban O. Mazzoni
,
Hynek Wichterle
,
David Gifford
Bioinformatics
28
(12), 2012, pp. 250-257
Which species is it? Species-driven gene name disambiguation using random walks over a mixture of adjacency matrices
Nathan Harmston
,
Wendy Filsell
,
Michael P.H. Stumpf
Bioinformatics
28
(2), 2012, pp. 254-260
A novel specific edge effect correction method for RNA interference screenings
Jean-Philippe Carralot
,
Arnaud Ogier
,
Annette Boese
,
Auguste Genovesio
,
Priscille Brodin
,
Peter Sommer
,
Thierry Dorval
Bioinformatics
28
(2), 2012, pp. 261-268
Fast alignment of fragmentation trees
Franziska Hufsky
,
Kai Dührkop
,
Florian Rasche
,
Markus Chimani
,
Sebastian Böcker
Bioinformatics
28
(12), 2012, pp. 265-273
TREAT: A bioinformatics tool for variant annotations and visualizations in targeted and exome sequencing data
Yan W. Asmann
,
Sumit Middha
,
Asif Hossain
,
Saurabh Baheti
,
Ying Li
,
High-Seng Chai
,
Zhifu Sun
,
Patrick H. Duffy
,
Ahmed A. Hadad
,
Asha Nair
,
Xiaoyu Liu
,
Yuji Zhang
,
Eric W. Klee
,
Krishna R. Kalari
,
Jean-Pierre A. Kocher
Bioinformatics
28
(2), 2012, pp. 277-278
Efficient algorithms for the reconciliation problem with gene duplication, horizontal transfer and loss
Mukul S. Bansal
,
Eric J. Alm
,
Manolis Kellis
Bioinformatics
28
(12), 2012, pp. 283-291
NARWHAL, a primary analysis pipeline for NGS data
R.W.W. Brouwer
,
M.C.G.N. van den Hout
,
F.G. Grosveld
,
W.F.J. van IJcken
Bioinformatics
28
(2), 2012, pp. 284-285
MSnbase-an R/Bioconductor package for isobaric tagged mass spectrometry data visualization, processing and quantitation
Laurent Gatto
,
Kathryn S. Lilley
Bioinformatics
28
(2), 2012, pp. 288-289
A novel and versatile computational tool to model translation
Dominique Chu
,
Nicolae Zabet
,
Tobias von der Haar
Bioinformatics
28
(2), 2012, pp. 292-293
Extending ontologies by finding siblings using set expansion techniques
Götz Fabian
,
Thomas Wächter
,
Michael Schroeder
Bioinformatics
28
(12), 2012, pp. 292-300
Telescoper: De novo assembly of highly repetitive regions
Ma'ayan Bresler
,
Sara Sheehan
,
Andrew H. Chan
,
Yun S. Song
Bioinformatics
28
(18), 2012, pp. 311-317
Prediction and analysis of nucleotide-binding residues using sequence and sequence-derived structural descriptors
Ke Chen
,
Marcin J. Mizianty
,
Lukasz Kurgan
Bioinformatics
28
(3), 2012, pp. 331-341
HydroPaCe: Understanding and predicting cross-inhibition in serine proteases through hydrophobic patch centroids
V.M. Gonçalves-Almeida
,
D.E.V. Pires
,
R.C. de Melo-Minardi
,
C.H. da Silveira
,
W. Meira
,
M.M. Santoro
Bioinformatics
28
(3), 2012, pp. 342-349
Inhibition of HIV-1 protease: The rigidity perspective
J.W. Heal
,
J.E. Jimenez-Roldan
,
S.A. Wells
,
R.B. Freedman
,
R.A. Römer
Bioinformatics
28
(3), 2012, pp. 350-357
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