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Technische Universität München
Lehrstuhl für Effiziente Algorithmen
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Antisense transcription is coupled to nucleosome occupancy in sense promoters
Zhiming Dai
,
Xianhua Dai
Bioinformatics
28
(21), 2012, pp. 2719-2723
Rainbow: An integrated tool for efficient clustering and assembling RAD-seq reads
Zechen Chong
,
Jue Ruan
,
Chung-I. Wu
Bioinformatics
28
(21), 2012, pp. 2732-2737
GFOLD: A generalized fold change for ranking differentially expressed genes from RNA-seq data
Jianxing Feng
,
Clifford A. Meyer
,
Qian Wang
,
Jun S. Liu
,
X. Shirley Liu
,
Yong Zhang
Bioinformatics
28
(21), 2012, pp. 2782-2788
HighSSR: High-throughput SSR characterization and locus development from next-gen sequencing data
Alexander Churbanov
,
Rachael Ryan
,
Nabeeh Hasan
,
Donovan Bailey
,
Haofeng Chen
,
Brook Milligan
,
Peter Houde
Bioinformatics
28
(21), 2012, pp. 2797-2803
Bayesian Inference of Signaling Network Topology in a Cancer Cell Line
Steven M. Hill
,
Yiling Lu
,
Jennifer Molina
,
Laura M. Heiser
,
Paul T. Spellman
,
Terence P. Speed
,
Joe W. Gray
,
Gordon B. Mills
,
Sach Mukherjee
Bioinformatics
28
(21), 2012, pp. 2804-2810
Static network structure can be used to model the phenotypic effects of perturbations in regulatory networks
Ariel Feiglin
,
Adar Hacohen
,
Avital Sarusi
,
Jasmin Fisher
,
Ron Unger
,
Yanay Ofran
Bioinformatics
28
(21), 2012, pp. 2811-2818
Pythoscape: A framework for generation of large protein similarity networks
Alan E. Barber II
,
Patricia C. Babbitt
Bioinformatics
28
(21), 2012, pp. 2845-2846
FSelector: A Ruby gem for feature selection
Tiejun Cheng
,
Yanli Wang
,
Stephen H. Bryant
Bioinformatics
28
(21), 2012, pp. 2851-2852
FetalQuant: Deducing fractional fetal DNA concentration from massively parallel sequencing of DNA in maternal plasma
Peiyong Jiang
,
K.C. Allen Chan
,
Gary J.W. Liao
,
Yama W.L. Zheng
,
Tak Y. Leung
,
Rossa W.K. Chiu
,
Yuk Ming Dennis Lo
,
Hao Sun
Bioinformatics
28
(22), 2012, pp. 2883-2890
Comparing clustering and pre-processing in taxonomy analysis
Marc J. Bonder
,
Sanne Abeln
,
Egija Zaura
,
Bernd W. Brandt
Bioinformatics
28
(22), 2012, pp. 2891-2897
VIPR HMM: A hidden Markov model for detecting recombination with microbial detection microarrays
Adam F. Allred
,
Hilary Renshaw
,
Scott Weaver
,
Robert B. Tesh
,
David Wang
Bioinformatics
28
(22), 2012, pp. 2922-2929
A linear programming model for protein inference problem in shotgun proteomics
Ting Huang
,
Zengyou He
Bioinformatics
28
(22), 2012, pp. 2956-2962
Application and evaluation of automated methods to extract neuroanatomical connectivity statements from free text
Leon French
,
Suzanne Lane
,
Lydia Xu
,
Celia Siu
,
Cathy Kwok
,
Yiqi Chen
,
Claudia Krebs
,
Paul Pavlidis
Bioinformatics
28
(22), 2012, pp. 2963-2970
Biologistics - Diffusion coefficients for complete proteome of Escherichia coli
Tomasz Kalwarczyk
,
Marcin Tabaka
,
Robert Holyst
Bioinformatics
28
(22), 2012, pp. 2971-2978
Mendel-GPU: Haplotyping and genotype imputation on graphics processing units
Gary K. Chen
,
Kai Wang
,
Alex H. Stram
,
Eric M. Sobel
,
Kenneth Lange
Bioinformatics
28
(22), 2012, pp. 2979-2980
GREVE: Genomic Recurrent Event ViEwer to assist the identification of patterns across individual cancer samples
Jean-Baptiste Cazier
,
Chris C. Holmes
,
John Broxholme
Bioinformatics
28
(22), 2012, pp. 2981-2982
SpolPred: Rapid and accurate prediction of Mycobacterium tuberculosis spoligotypes from short genomic sequences
Francesc Coll
,
Kim Mallard
,
Mark D. Preston
,
Stephen Bentley
,
Julian Parkhill
,
Ruth McNerney
,
Nigel Martin
,
Taane G. Clark
Bioinformatics
28
(22), 2012, pp. 2991-2993
CSB: A Python framework for structural bioinformatics
Ivan Kalev
,
Martin Mechelke
,
Klaus O. Kopec
,
Thomas Holder
,
Simeon Carstens
,
Michael Habeck
Bioinformatics
28
(22), 2012, pp. 2996-2997
NetworkView: 3D display and analysis of protein RNA interaction networks
John Eargle
,
Zaida Luthey-Schulten
Bioinformatics
28
(22), 2012, pp. 3000-3001
ChemBioServer: A web-based pipeline for filtering, clustering and visualization of chemical compounds used in drug discovery
Emmanouil Athanasiadis
,
Zoe Cournia
,
George Spyrou
Bioinformatics
28
(22), 2012, pp. 3002-3003
An RNA Mapping DataBase for curating RNA structure mapping experiments
Pablo Cordero
,
Julius B. Lucks
,
Rhiju Das
Bioinformatics
28
(22), 2012, pp. 3006-3008
``Location, Location, Location'': A spatial approach for rare variant analysis and an application to a study on non-syndromic cleft lip with or without cleft palate
Heide Fier
,
Sungho Won
,
Dmitry Prokopenko
,
Taofik AlChawa
,
Kerstin U. Ludwig
,
Rolf Fimmers
,
Edwin K. Silverman
,
Marcello Pagano
,
Elisabeth Mangold
,
Christoph Lange
Bioinformatics
28
(23), 2012, pp. 3027-3033
Pinstripe: A suite of programs for integrating transcriptomic and proteomic datasets identifies novel proteins and improves differentiation of protein-coding and non-coding genes
Dennis K. Gascoigne
,
Seth W. Cheetham
,
Pierre B. Cattenoz
,
Michael B. Clark
,
Paulo P. Amaral
,
Ryan J. Taft
,
Dagmar Wilhelm
,
Marcel E. Dinger
,
John S. Mattick
Bioinformatics
28
(23), 2012, pp. 3042-3050
SCALCE: Boosting sequence compression algorithms using locally consistent encoding
Faraz Hach
,
Ibrahim Numanagić
,
Can Alkan
,
S. Cenk Sahinalp
Bioinformatics
28
(23), 2012, pp. 3051-3057
Predicting protein residue-residue contacts using deep networks and boosting
Jesse Eickholt
,
Jianlin Cheng
Bioinformatics
28
(23), 2012, pp. 3066-3072
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