@article{Bocker/07,
AUTHOR = {B{\"{o}}cker, Sebastian},
TITLE = {Simulating multiplexed SNP discovery rates using base-specific cleavage and mass spectrometry},
BOOKTITLE = {Proceedings of the 5th European Conference on Computational Biology, ECCB'2006 (Eilat, Israel, January 21-24, 2007)},
JOURNAL = {Bioinformatics},
VOLUME = {23},
NUMBER = {2},
PAGES = {5-11},
YEAR = {2007},
URL = {http://dx.doi.org/10.1093/bioinformatics/btl291},
PUBLISHER = {Oxford University Press},
}
@article{Acar-Aykut-Bingol-Bingol-Bro-Yener/07,
AUTHOR = {Acar, Evrim and Aykut-Bingol, Canan and Bingol, Haluk and Bro, Rasmus and Yener, B{\"{u}}lent},
TITLE = {Multiway analysis of epilepsy tensors},
BOOKTITLE = {Proceedings of the 15th Annual International Conference on Intelligent Systems for Molecular Biology/6th European Conference on Computational Biology, ISMB'2007/ECCB'2007 (Vienna, Austria, July 21-25, 2007)},
JOURNAL = {Bioinformatics},
VOLUME = {23},
NUMBER = {13},
PAGES = {10-18},
YEAR = {2007},
URL = {http://dx.doi.org/10.1093/bioinformatics/btm210},
PUBLISHER = {Oxford University Press},
}
@article{Barker-Meade-Pagel/07,
AUTHOR = {Barker, Daniel and Meade, Andrew and Pagel, Mark},
TITLE = {Constrained models of evolution lead to improved prediction of functional linkage from correlated gain and loss of genes},
JOURNAL = {Bioinformatics},
VOLUME = {23},
NUMBER = {1},
PAGES = {14-20},
YEAR = {2007},
URL = {http://dx.doi.org/10.1093/bioinformatics/btl558},
PUBLISHER = {Oxford University Press},
}
@article{Andronescu-Condon-Hoos-Mathews-Murphy/07,
AUTHOR = {Andronescu, Mirela and Condon, Anne and Hoos, Holger H. and Mathews, David H. and Murphy, Kevin P.},
TITLE = {Efficient parameter estimation for RNA secondary structure prediction},
BOOKTITLE = {Proceedings of the 15th Annual International Conference on Intelligent Systems for Molecular Biology/6th European Conference on Computational Biology, ISMB'2007/ECCB'2007 (Vienna, Austria, July 21-25, 2007)},
JOURNAL = {Bioinformatics},
VOLUME = {23},
NUMBER = {13},
PAGES = {19-28},
YEAR = {2007},
URL = {http://dx.doi.org/10.1093/bioinformatics/btm223},
PUBLISHER = {Oxford University Press},
}
@article{Asur-Ucar-Parthasarathy/07,
AUTHOR = {Asur, Sitaram and Ucar, Duygu and Parthasarathy, Srinivasan},
TITLE = {An ensemble framework for clustering protein-protein interaction networks},
BOOKTITLE = {Proceedings of the 15th Annual International Conference on Intelligent Systems for Molecular Biology/6th European Conference on Computational Biology, ISMB'2007/ECCB'2007 (Vienna, Austria, July 21-25, 2007)},
JOURNAL = {Bioinformatics},
VOLUME = {23},
NUMBER = {13},
PAGES = {29-40},
YEAR = {2007},
URL = {http://dx.doi.org/10.1093/bioinformatics/btm212},
PUBLISHER = {Oxford University Press},
}
@article{Baumgartner-Cohen-Fox-Acquaah-Mensah-Hunter/07,
AUTHOR = {Baumgartner, William A., Jr. and Cohen, K. Bretonnel and Fox, Lynne M. and Acquaah-Mensah, George and Hunter, Lawrence},
TITLE = {Manual curation is not sufficient for annotation of genomic databases},
BOOKTITLE = {Proceedings of the 15th Annual International Conference on Intelligent Systems for Molecular Biology/6th European Conference on Computational Biology, ISMB'2007/ECCB'2007 (Vienna, Austria, July 21-25, 2007)},
JOURNAL = {Bioinformatics},
VOLUME = {23},
NUMBER = {13},
PAGES = {41-48},
YEAR = {2007},
URL = {http://dx.doi.org/10.1093/bioinformatics/btm229},
PUBLISHER = {Oxford University Press},
}
@article{Bais-Grossmann-Vingron/07,
AUTHOR = {Bais, Abha Singh and Grossmann, Steffen and Vingron, Martin},
TITLE = {Simultaneous alignment and annotation of cis-regulatory regions},
BOOKTITLE = {Proceedings of the 5th European Conference on Computational Biology, ECCB'2006 (Eilat, Israel, January 21-24, 2007)},
JOURNAL = {Bioinformatics},
VOLUME = {23},
NUMBER = {2},
PAGES = {44-49},
YEAR = {2007},
URL = {http://dx.doi.org/10.1093/bioinformatics/btl305},
PUBLISHER = {Oxford University Press},
}
@article{Fogel-Young-Hawkins-Ledirac/07,
AUTHOR = {Fogel, Paul and Young, S. Stanley and Hawkins, Douglas M. and Ledirac, Nathalie},
TITLE = {Inferential, robust non-negative matrix factorization analysis of microarray data},
JOURNAL = {Bioinformatics},
VOLUME = {23},
NUMBER = {1},
PAGES = {44-49},
YEAR = {2007},
URL = {http://dx.doi.org/10.1093/bioinformatics/btl550},
PUBLISHER = {Oxford University Press},
}
@article{Berger-Wolf-Sheikh-DasGupta-Ashley-Caballero-Chaovalitwongse-Putrevu/07,
AUTHOR = {Berger-Wolf, Tanya Y. and Sheikh, Saad I. and DasGupta, Bhaskar and Ashley, Mary V. and Caballero, Isabel C. and Chaovalitwongse, Wanpracha and Putrevu, S. Lahari},
TITLE = {Reconstructing sibling relationships in wild populations},
BOOKTITLE = {Proceedings of the 15th Annual International Conference on Intelligent Systems for Molecular Biology/6th European Conference on Computational Biology, ISMB'2007/ECCB'2007 (Vienna, Austria, July 21-25, 2007)},
JOURNAL = {Bioinformatics},
VOLUME = {23},
NUMBER = {13},
PAGES = {49-56},
YEAR = {2007},
URL = {http://dx.doi.org/10.1093/bioinformatics/btm219},
PUBLISHER = {Oxford University Press},
}
@article{Faraut-de_Givry-Chabrier-Derrien-Galibert-Hitte-Schiex/07,
AUTHOR = {Faraut, T. and de Givry, S. and Chabrier, P. and Derrien, T. and Galibert, F. and Hitte, C. and Schiex, T.},
TITLE = {A comparative genome approach to marker ordering},
BOOKTITLE = {Proceedings of the 5th European Conference on Computational Biology, ECCB'2006 (Eilat, Israel, January 21-24, 2007)},
JOURNAL = {Bioinformatics},
VOLUME = {23},
NUMBER = {2},
PAGES = {50-56},
YEAR = {2007},
URL = {http://dx.doi.org/10.1093/bioinformatics/btl321},
PUBLISHER = {Oxford University Press},
}
@article{Bleakley-Biau-Vert/07,
AUTHOR = {Bleakley, Kevin and Biau, G{\'{e}}rard and Vert, Jean-Philippe},
TITLE = {Supervised reconstruction of biological networks with local models},
BOOKTITLE = {Proceedings of the 15th Annual International Conference on Intelligent Systems for Molecular Biology/6th European Conference on Computational Biology, ISMB'2007/ECCB'2007 (Vienna, Austria, July 21-25, 2007)},
JOURNAL = {Bioinformatics},
VOLUME = {23},
NUMBER = {13},
PAGES = {57-65},
YEAR = {2007},
URL = {http://dx.doi.org/10.1093/bioinformatics/btm204},
PUBLISHER = {Oxford University Press},
}
@article{Gavish-Peled-Chor/07,
AUTHOR = {Gavish, Matan and Peled, Amnon and Chor, Benny},
TITLE = {Genetic code symmetry and efficient design of GC-constrained coding sequences},
BOOKTITLE = {Proceedings of the 5th European Conference on Computational Biology, ECCB'2006 (Eilat, Israel, January 21-24, 2007)},
JOURNAL = {Bioinformatics},
VOLUME = {23},
NUMBER = {2},
PAGES = {57-63},
YEAR = {2007},
URL = {http://dx.doi.org/10.1093/bioinformatics/btl317},
PUBLISHER = {Oxford University Press},
}
@article{Hua-Craig-Brun-Webster-Zismann-Tembe-Joshipura-Huentelman-Dougherty-Stephan/07,
AUTHOR = {Hua, Jianping and Craig, David W. and Brun, Marcel and Webster, Jennifer and Zismann, Victoria and Tembe, Waibhav and Joshipura, Keta and Huentelman, Matthew J. and Dougherty, Edward R. and Stephan, Dietrich A.},
TITLE = {SNiPer-HD: Improved genotype calling accuracy by an expectation-maximization algorithm for high-density SNP arrays},
JOURNAL = {Bioinformatics},
VOLUME = {23},
NUMBER = {1},
PAGES = {57-63},
YEAR = {2007},
URL = {http://dx.doi.org/10.1093/bioinformatics/btl536},
PUBLISHER = {Oxford University Press},
}
@article{Dietter-Mattheisen-Furst-Ruschendorf-Wienker-Strauch/07,
AUTHOR = {Dietter, Johannes and Mattheisen, Manuel and F{\"{u}}rst, Robert and R{\"{u}}schendorf, Franz and Wienker, Thomas F. and Strauch, Konstantin},
TITLE = {Linkage analysis using sex-specific recombination fractions with GENEHUNTER-MODSCORE},
JOURNAL = {Bioinformatics},
VOLUME = {23},
NUMBER = {1},
PAGES = {64-70},
YEAR = {2007},
URL = {http://dx.doi.org/10.1093/bioinformatics/btl539},
PUBLISHER = {Oxford University Press},
}
@article{Hermans-Tsiporkova/07,
AUTHOR = {Hermans, Filip and Tsiporkova, Elena},
TITLE = {Merging microarray cell synchronization experiments through curve alignment},
BOOKTITLE = {Proceedings of the 5th European Conference on Computational Biology, ECCB'2006 (Eilat, Israel, January 21-24, 2007)},
JOURNAL = {Bioinformatics},
VOLUME = {23},
NUMBER = {2},
PAGES = {64-70},
YEAR = {2007},
URL = {http://dx.doi.org/10.1093/bioinformatics/btl320},
PUBLISHER = {Oxford University Press},
}
@article{Chen-Zhao-Gordon-Murphy/07,
AUTHOR = {Chen, Shann-Ching and Zhao, Ting and Gordon, Geoffrey J. and Murphy, Robert F.},
TITLE = {Automated image analysis of protein localization in budding yeast},
BOOKTITLE = {Proceedings of the 15th Annual International Conference on Intelligent Systems for Molecular Biology/6th European Conference on Computational Biology, ISMB'2007/ECCB'2007 (Vienna, Austria, July 21-25, 2007)},
JOURNAL = {Bioinformatics},
VOLUME = {23},
NUMBER = {13},
PAGES = {66-71},
YEAR = {2007},
URL = {http://dx.doi.org/10.1093/bioinformatics/btm206},
PUBLISHER = {Oxford University Press},
}
@article{Chung-Lee-Elston-Park/07,
AUTHOR = {Chung, Yujin and Lee, Seung Yeoun and Elston, Robert C. and Park, Taesung},
TITLE = {Odds ratio based multifactor-dimensionality reduction method for detecting gene-gene interactions},
JOURNAL = {Bioinformatics},
VOLUME = {23},
NUMBER = {1},
PAGES = {71-76},
YEAR = {2007},
URL = {http://dx.doi.org/10.1093/bioinformatics/btl557},
PUBLISHER = {Oxford University Press},
}
@article{Chen-Hughes-Morris/07,
AUTHOR = {Chen, Xiaoyu and Hughes, Timothy R. and Morris, Quaid},
TITLE = {RankMotif++: A motif-search algorithm that accounts for relative ranks of $K$-mers in binding transcription factors},
BOOKTITLE = {Proceedings of the 15th Annual International Conference on Intelligent Systems for Molecular Biology/6th European Conference on Computational Biology, ISMB'2007/ECCB'2007 (Vienna, Austria, July 21-25, 2007)},
JOURNAL = {Bioinformatics},
VOLUME = {23},
NUMBER = {13},
PAGES = {72-79},
YEAR = {2007},
URL = {http://dx.doi.org/10.1093/bioinformatics/btm224},
PUBLISHER = {Oxford University Press},
}
@article{Hollunder-Friedel-Beyer-Workman-Wilhelm/07,
AUTHOR = {Hollunder, Jens and Friedel, Maik and Beyer, Andreas and Workman, Christopher T. and Wilhelm, Thomas},
TITLE = {DASS: Efficient discovery and $p$-value calculation of substructures in unordered data},
JOURNAL = {Bioinformatics},
VOLUME = {23},
NUMBER = {1},
PAGES = {77-83},
YEAR = {2007},
URL = {http://dx.doi.org/10.1093/bioinformatics/btl511},
PUBLISHER = {Oxford University Press},
}
@article{Chung-Kostka-Vingron/07,
AUTHOR = {Chung, Ho-Ryun and Kostka, Dennis and Vingron, Martin},
TITLE = {A physical model for tiling array analysis},
BOOKTITLE = {Proceedings of the 15th Annual International Conference on Intelligent Systems for Molecular Biology/6th European Conference on Computational Biology, ISMB'2007/ECCB'2007 (Vienna, Austria, July 21-25, 2007)},
JOURNAL = {Bioinformatics},
VOLUME = {23},
NUMBER = {13},
PAGES = {80-86},
YEAR = {2007},
URL = {http://dx.doi.org/10.1093/bioinformatics/btm167},
PUBLISHER = {Oxford University Press},
}
@article{Csuros-Holey-Rogozin/07,
AUTHOR = {Cs{\H{u}}r{\"{o}}s, Mikl{\'{o}}s and Holey, J. Andrew and Rogozin, Igor B.},
TITLE = {In search of lost introns},
BOOKTITLE = {Proceedings of the 15th Annual International Conference on Intelligent Systems for Molecular Biology/6th European Conference on Computational Biology, ISMB'2007/ECCB'2007 (Vienna, Austria, July 21-25, 2007)},
JOURNAL = {Bioinformatics},
VOLUME = {23},
NUMBER = {13},
PAGES = {87-96},
YEAR = {2007},
URL = {http://dx.doi.org/10.1093/bioinformatics/btm190},
PUBLISHER = {Oxford University Press},
}
@article{Beasley-Planes/07,
AUTHOR = {Beasley, John E. and Planes, Francisco J.},
TITLE = {Recovering metabolic pathways via optimization},
JOURNAL = {Bioinformatics},
VOLUME = {23},
NUMBER = {1},
PAGES = {92-98},
YEAR = {2007},
URL = {http://dx.doi.org/10.1093/bioinformatics/btl554},
PUBLISHER = {Oxford University Press},
}
@article{Cui-Vinar-Brejova-Shasha-Li/07,
AUTHOR = {Cui, Xuefeng and Vina{\v{r}}, Tom{\'{a}}s and Brejov{\'{a}}, Brona and Shasha, Dennis and Li, Ming},
TITLE = {Homology search for genes},
BOOKTITLE = {Proceedings of the 15th Annual International Conference on Intelligent Systems for Molecular Biology/6th European Conference on Computational Biology, ISMB'2007/ECCB'2007 (Vienna, Austria, July 21-25, 2007)},
JOURNAL = {Bioinformatics},
VOLUME = {23},
NUMBER = {13},
PAGES = {97-103},
YEAR = {2007},
URL = {http://dx.doi.org/10.1093/bioinformatics/btm225},
PUBLISHER = {Oxford University Press},
}
@article{Hildebrandt-Blossey-Rjasanow-Kohlbacher-Lenhof/07,
AUTHOR = {Hildebrandt, Andreas and Blossey, Ralf and Rjasanow, Sergej and Kohlbacher, Oliver and Lenhof, Hans-Peter},
TITLE = {Electrostatic potentials of proteins in water: A structured continuum approach},
BOOKTITLE = {Proceedings of the 5th European Conference on Computational Biology, ECCB'2006 (Eilat, Israel, January 21-24, 2007)},
JOURNAL = {Bioinformatics},
VOLUME = {23},
NUMBER = {2},
PAGES = {99-103},
YEAR = {2007},
URL = {http://dx.doi.org/10.1093/bioinformatics/btl312},
PUBLISHER = {Oxford University Press},
}
@article{Danziger-Zeng-Wang-Brachmann-Lathrop/07,
AUTHOR = {Danziger, Samuel A. and Zeng, Jue and Wang, Ying and Brachmann, Rainer K. and Lathrop, Richard H.},
TITLE = {Choosing where to look next in a mutation sequence space: Active Learning of Informative p53 cancer rescue mutants},
BOOKTITLE = {Proceedings of the 15th Annual International Conference on Intelligent Systems for Molecular Biology/6th European Conference on Computational Biology, ISMB'2007/ECCB'2007 (Vienna, Austria, July 21-25, 2007)},
JOURNAL = {Bioinformatics},
VOLUME = {23},
NUMBER = {13},
PAGES = {104-114},
YEAR = {2007},
URL = {http://dx.doi.org/10.1093/bioinformatics/btm166},
PUBLISHER = {Oxford University Press},
}
@article{Clemente-Satou-Valiente/07,
AUTHOR = {Clemente, Jos{\'{e}} C. and Satou, Kenji and Valiente, Gabriel},
TITLE = {Phylogenetic reconstruction from non-genomic data},
BOOKTITLE = {Proceedings of the 5th European Conference on Computational Biology, ECCB'2006 (Eilat, Israel, January 21-24, 2007)},
JOURNAL = {Bioinformatics},
VOLUME = {23},
NUMBER = {2},
PAGES = {110-115},
YEAR = {2007},
URL = {http://dx.doi.org/10.1093/bioinformatics/btl307},
PUBLISHER = {Oxford University Press},
}
@article{Dawelbait-Winter-Zhang-Pilarsky-Grutzmann-Heinrich-Schroeder/07,
AUTHOR = {Dawelbait, Gihan and Winter, Christof and Zhang, Yanju and Pilarsky, Christian and Gr{\"{u}}tzmann, Robert and Heinrich, J{\"{o}}rg-Christian and Schroeder, Michael},
TITLE = {Structural templates predict novel protein interactions and targets from pancreas tumour gene expression data},
BOOKTITLE = {Proceedings of the 15th Annual International Conference on Intelligent Systems for Molecular Biology/6th European Conference on Computational Biology, ISMB'2007/ECCB'2007 (Vienna, Austria, July 21-25, 2007)},
JOURNAL = {Bioinformatics},
VOLUME = {23},
NUMBER = {13},
PAGES = {115-124},
YEAR = {2007},
URL = {http://dx.doi.org/10.1093/bioinformatics/btm188},
PUBLISHER = {Oxford University Press},
}
@article{Gorecki-Tiuryn/07a,
AUTHOR = {G{\'{o}}recki, Pawel and Tiuryn, Jerzy},
TITLE = {Inferring phylogeny from whole genomes},
BOOKTITLE = {Proceedings of the 5th European Conference on Computational Biology, ECCB'2006 (Eilat, Israel, January 21-24, 2007)},
JOURNAL = {Bioinformatics},
VOLUME = {23},
NUMBER = {2},
PAGES = {116-122},
YEAR = {2007},
URL = {http://dx.doi.org/10.1093/bioinformatics/btl296},
PUBLISHER = {Oxford University Press},
}
@article{Achaz-Boyer-Rocha-Viari-Coissac/07,
AUTHOR = {Achaz, Guillaume and Boyer, Fr{\'{e}}d{\'{e}}ric and Rocha, Eduardo P.C. and Viari, Alain and Coissac, Eric},
TITLE = {Repseek, a tool to retrieve approximate repeats from large DNA sequences},
JOURNAL = {Bioinformatics},
VOLUME = {23},
NUMBER = {1},
PAGES = {119-121},
YEAR = {2007},
URL = {http://dx.doi.org/10.1093/bioinformatics/btl519},
PUBLISHER = {Oxford University Press},
}
@article{Jin-Nakhleh-Snir-Tuller/07a,
AUTHOR = {Jin, Guohua and Nakhleh, Luay and Snir, Sagi and Tuller, Tamir},
TITLE = {Efficient parsimony-based methods for phylogenetic network reconstruction},
BOOKTITLE = {Proceedings of the 5th European Conference on Computational Biology, ECCB'2006 (Eilat, Israel, January 21-24, 2007)},
JOURNAL = {Bioinformatics},
VOLUME = {23},
NUMBER = {2},
PAGES = {123-128},
YEAR = {2007},
URL = {http://dx.doi.org/10.1093/bioinformatics/btl313},
PUBLISHER = {Oxford University Press},
}
@article{De_Bie-Tranchevent-van_Oeffelen-Moreau/07,
AUTHOR = {De Bie, Tijl and Tranchevent, L{\'{e}}on-Charles and van Oeffelen, Liesbeth M.M. and Moreau, Yves},
TITLE = {Kernel-based data fusion for gene prioritization},
BOOKTITLE = {Proceedings of the 15th Annual International Conference on Intelligent Systems for Molecular Biology/6th European Conference on Computational Biology, ISMB'2007/ECCB'2007 (Vienna, Austria, July 21-25, 2007)},
JOURNAL = {Bioinformatics},
VOLUME = {23},
NUMBER = {13},
PAGES = {125-132},
YEAR = {2007},
URL = {http://dx.doi.org/10.1093/bioinformatics/btm187},
PUBLISHER = {Oxford University Press},
}
@article{Bernt-Merkle-Middendorf/07,
AUTHOR = {Bernt, Matthias and Merkle, Daniel and Middendorf, Martin},
TITLE = {Using median sets for inferring phylogenetic trees},
BOOKTITLE = {Proceedings of the 5th European Conference on Computational Biology, ECCB'2006 (Eilat, Israel, January 21-24, 2007)},
JOURNAL = {Bioinformatics},
VOLUME = {23},
NUMBER = {2},
PAGES = {129-135},
YEAR = {2007},
URL = {http://dx.doi.org/10.1093/bioinformatics/btl300},
PUBLISHER = {Oxford University Press},
}
@article{Deane-Dong-Huard-Lance-Wood/07,
AUTHOR = {Deane, Charlotte M. and Dong, Mingqiang and Huard, Fabien P.E. and Lance, Braddon K. and Wood, Graham R.},
TITLE = {Cotranslational protein folding --- Fact or fiction?},
BOOKTITLE = {Proceedings of the 15th Annual International Conference on Intelligent Systems for Molecular Biology/6th European Conference on Computational Biology, ISMB'2007/ECCB'2007 (Vienna, Austria, July 21-25, 2007)},
JOURNAL = {Bioinformatics},
VOLUME = {23},
NUMBER = {13},
PAGES = {142-148},
YEAR = {2007},
URL = {http://dx.doi.org/10.1093/bioinformatics/btm175},
PUBLISHER = {Oxford University Press},
}
@article{Helvik-Snove-Satrom/07,
AUTHOR = {Helvik, Snorre A. and Sn{\o}ve, Ola, Jr. and S{\ae}trom, P{\aa}l},
TITLE = {Reliable prediction of Drosha processing sites improves microRNA gene prediction},
JOURNAL = {Bioinformatics},
VOLUME = {23},
NUMBER = {2},
PAGES = {142-149},
YEAR = {2007},
URL = {http://dx.doi.org/10.1093/bioinformatics/btl570},
PUBLISHER = {Oxford University Press},
}
@article{Hertz-Yanover/07,
AUTHOR = {Hertz, Tomer and Yanover, Chen},
TITLE = {Identifying HLA supertypes by learning distance functions},
BOOKTITLE = {Proceedings of the 5th European Conference on Computational Biology, ECCB'2006 (Eilat, Israel, January 21-24, 2007)},
JOURNAL = {Bioinformatics},
VOLUME = {23},
NUMBER = {2},
PAGES = {148-155},
YEAR = {2007},
URL = {http://dx.doi.org/10.1093/Bioinformatics/btl324},
PUBLISHER = {Oxford University Press},
}
@article{Dutkowski-Tiuryn/07,
AUTHOR = {Dutkowski, Janusz and Tiuryn, Jerzy},
TITLE = {Identification of functional modules from conserved ancestral protein-protein interactions},
BOOKTITLE = {Proceedings of the 15th Annual International Conference on Intelligent Systems for Molecular Biology/6th European Conference on Computational Biology, ISMB'2007/ECCB'2007 (Vienna, Austria, July 21-25, 2007)},
JOURNAL = {Bioinformatics},
VOLUME = {23},
NUMBER = {13},
PAGES = {149-158},
YEAR = {2007},
URL = {http://dx.doi.org/10.1093/bioinformatics/btm194},
PUBLISHER = {Oxford University Press},
}
@article{Dixon-Eperon-Samani/07,
AUTHOR = {Dixon, Richard J. and Eperon, Ian C. and Samani, Nilesh J.},
TITLE = {Complementary intron sequence motifs associated with human exon repetition: A role for intragenic, inter-transcript interactions in gene expression},
JOURNAL = {Bioinformatics},
VOLUME = {23},
NUMBER = {2},
PAGES = {150-155},
YEAR = {2007},
URL = {http://dx.doi.org/10.1093/bioinformatics/btl575},
PUBLISHER = {Oxford University Press},
}
@article{Farrar/07,
AUTHOR = {Farrar, Michael},
TITLE = {Striped Smith-Waterman speeds database searches six times over other SIMD implementations},
JOURNAL = {Bioinformatics},
VOLUME = {23},
NUMBER = {2},
PAGES = {156-161},
YEAR = {2007},
URL = {http://dx.doi.org/10.1093/bioinformatics/btl582},
PUBLISHER = {Oxford University Press},
}
@article{Dyer-Murali-Sobral/07,
AUTHOR = {Dyer, Matthew D. and Murali, T.M. and Sobral, Bruno W.},
TITLE = {Computational prediction of host-pathogen protein-protein interactions},
BOOKTITLE = {Proceedings of the 15th Annual International Conference on Intelligent Systems for Molecular Biology/6th European Conference on Computational Biology, ISMB'2007/ECCB'2007 (Vienna, Austria, July 21-25, 2007)},
JOURNAL = {Bioinformatics},
VOLUME = {23},
NUMBER = {13},
PAGES = {159-166},
YEAR = {2007},
URL = {http://dx.doi.org/10.1093/bioinformatics/btm208},
PUBLISHER = {Oxford University Press},
}
@article{Estrada-Gil-Fernandez-Lopez-Hernandez-Lemus-Silva-Zolezzi-Hidalgo-Miranda-Jimenez-Sanchez-Vallejo-Clemente/07,
AUTHOR = {Estrada-Gil, Jes{\'{u}}s K. and Fern{\'{a}}ndez-L{\'{o}}pez, Juan C. and Hern{\'{a}}ndez-Lemus, Enrique and Silva-Zolezzi, Irma and Hidalgo-Miranda, Alfredo and Jim{\'{e}}nez-S{\'{a}}nchez, Gerardo and Vallejo-Clemente, Edgar E.},
TITLE = {GPDTI: A Genetic Programming Decision Tree Induction method to find epistatic effects in common complex diseases},
BOOKTITLE = {Proceedings of the 15th Annual International Conference on Intelligent Systems for Molecular Biology/6th European Conference on Computational Biology, ISMB'2007/ECCB'2007 (Vienna, Austria, July 21-25, 2007)},
JOURNAL = {Bioinformatics},
VOLUME = {23},
NUMBER = {13},
PAGES = {167-174},
YEAR = {2007},
URL = {http://dx.doi.org/10.1093/bioinformatics/btm205},
PUBLISHER = {Oxford University Press},
}
@article{Hirsh-Sharan/07,
AUTHOR = {Hirsh, Eitan and Sharan, Roded},
TITLE = {Identification of conserved protein complexes based on a model of protein network evolution},
BOOKTITLE = {Proceedings of the 5th European Conference on Computational Biology, ECCB'2006 (Eilat, Israel, January 21-24, 2007)},
JOURNAL = {Bioinformatics},
VOLUME = {23},
NUMBER = {2},
PAGES = {170-176},
YEAR = {2007},
URL = {http://dx.doi.org/10.1093/bioinformatics/btl295},
PUBLISHER = {Oxford University Press},
}
@article{Eyal-Chennubhotla-Yang-Bahar/07,
AUTHOR = {Eyal, Eran and Chennubhotla, Chakra and Yang, Lee-Wei and Bahar, Ivet},
TITLE = {Anisotropic fluctuations of amino acids in protein structures: Insights from X-ray crystallography and elastic network models},
BOOKTITLE = {Proceedings of the 15th Annual International Conference on Intelligent Systems for Molecular Biology/6th European Conference on Computational Biology, ISMB'2007/ECCB'2007 (Vienna, Austria, July 21-25, 2007)},
JOURNAL = {Bioinformatics},
VOLUME = {23},
NUMBER = {13},
PAGES = {175-184},
YEAR = {2007},
URL = {http://dx.doi.org/10.1093/bioinformatics/btm186},
PUBLISHER = {Oxford University Press},
}
@article{Georgiev-Donald/07,
AUTHOR = {Georgiev, Ivelin and Donald, Bruce R.},
TITLE = {Dead-End Elimination with Backbone Flexibility},
BOOKTITLE = {Proceedings of the 15th Annual International Conference on Intelligent Systems for Molecular Biology/6th European Conference on Computational Biology, ISMB'2007/ECCB'2007 (Vienna, Austria, July 21-25, 2007)},
JOURNAL = {Bioinformatics},
VOLUME = {23},
NUMBER = {13},
PAGES = {185-194},
YEAR = {2007},
URL = {http://dx.doi.org/10.1093/bioinformatics/btm197},
PUBLISHER = {Oxford University Press},
}
@article{Graf-Nielsen-Kurtz-Huynen-Birney-Stunnenberg-Flicek/07,
AUTHOR = {Gr{\"{a}}f, Stefan and Nielsen, Fiona G.G. and Kurtz, Stefan and Huynen, Martijn A. and Birney, Ewan and Stunnenberg, Henk and Flicek, Paul},
TITLE = {Optimized design and assessment of whole genome tiling arrays},
BOOKTITLE = {Proceedings of the 15th Annual International Conference on Intelligent Systems for Molecular Biology/6th European Conference on Computational Biology, ISMB'2007/ECCB'2007 (Vienna, Austria, July 21-25, 2007)},
JOURNAL = {Bioinformatics},
VOLUME = {23},
NUMBER = {13},
PAGES = {195-204},
YEAR = {2007},
URL = {http://dx.doi.org/10.1093/bioinformatics/btm200},
PUBLISHER = {Oxford University Press},
}
@article{Birzele-Gewehr-Csaba-Zimmer/07,
AUTHOR = {Birzele, Fabian and Gewehr, Jan E. and Csaba, Gergely and Zimmer, Ralf},
TITLE = {Vorolign --- Fast structural alignment using Voronoi contacts},
BOOKTITLE = {Proceedings of the 5th European Conference on Computational Biology, ECCB'2006 (Eilat, Israel, January 21-24, 2007)},
JOURNAL = {Bioinformatics},
VOLUME = {23},
NUMBER = {2},
PAGES = {205-211},
YEAR = {2007},
URL = {http://dx.doi.org/10.1093/bioinformatics/btl294},
PUBLISHER = {Oxford University Press},
}
@article{Green-Karp/07,
AUTHOR = {Green, Michelle L. and Karp, Peter D.},
TITLE = {Using genome-context data to identify specific types of functional associations in pathway/genome databases},
BOOKTITLE = {Proceedings of the 15th Annual International Conference on Intelligent Systems for Molecular Biology/6th European Conference on Computational Biology, ISMB'2007/ECCB'2007 (Vienna, Austria, July 21-25, 2007)},
JOURNAL = {Bioinformatics},
VOLUME = {23},
NUMBER = {13},
PAGES = {205-211},
YEAR = {2007},
URL = {http://dx.doi.org/10.1093/bioinformatics/btm213},
PUBLISHER = {Oxford University Press},
}
@article{Enosh-Fleishman-Ben-Tal-Halperin/07,
AUTHOR = {Enosh, Angela and Fleishman, Sarel J. and Ben-Tal, Nir and Halperin, Dan},
TITLE = {Prediction and simulation of motion in pairs of transmembrane $\alpha$-helices},
BOOKTITLE = {Proceedings of the 5th European Conference on Computational Biology, ECCB'2006 (Eilat, Israel, January 21-24, 2007)},
JOURNAL = {Bioinformatics},
VOLUME = {23},
NUMBER = {2},
PAGES = {212-218},
YEAR = {2007},
URL = {http://dx.doi.org/10.1093/bioinformatics/btl325},
PUBLISHER = {Oxford University Press},
}
@article{Huang-Kannan-Winn/07,
AUTHOR = {Huang, Jim C. and Kannan, Anitha and Winn, John},
TITLE = {Bayesian association of haplotypes and non-genetic factors to regulatory and phenotypic variation in human populations},
BOOKTITLE = {Proceedings of the 15th Annual International Conference on Intelligent Systems for Molecular Biology/6th European Conference on Computational Biology, ISMB'2007/ECCB'2007 (Vienna, Austria, July 21-25, 2007)},
JOURNAL = {Bioinformatics},
VOLUME = {23},
NUMBER = {13},
PAGES = {212-221},
YEAR = {2007},
URL = {http://dx.doi.org/10.1093/bioinformatics/btm217},
PUBLISHER = {Oxford University Press},
}
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AUTHOR = {Friedberg, Iddo and Harder, Tim and Kolodny, Rachel and Sitbon, Einat and Li, Zhanwen and Godzik, Adam},
TITLE = {Using an alignment of fragment strings for comparing protein structures},
BOOKTITLE = {Proceedings of the 5th European Conference on Computational Biology, ECCB'2006 (Eilat, Israel, January 21-24, 2007)},
JOURNAL = {Bioinformatics},
VOLUME = {23},
NUMBER = {2},
PAGES = {219-224},
YEAR = {2007},
URL = {http://dx.doi.org/10.1093/bioinformatics/btl310},
PUBLISHER = {Oxford University Press},
}
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AUTHOR = {Huang, Yu and Li, Haifeng and Hu, Haiyan and Yan, Xifeng and Waterman, Michael S. and Huang, Haiyan and Zhou, Xianghong Jasmine},
TITLE = {Systematic discovery of functional modules and context-specific functional annotation of human genome},
BOOKTITLE = {Proceedings of the 15th Annual International Conference on Intelligent Systems for Molecular Biology/6th European Conference on Computational Biology, ISMB'2007/ECCB'2007 (Vienna, Austria, July 21-25, 2007)},
JOURNAL = {Bioinformatics},
VOLUME = {23},
NUMBER = {13},
PAGES = {222-229},
YEAR = {2007},
URL = {http://dx.doi.org/10.1093/bioinformatics/btm222},
PUBLISHER = {Oxford University Press},
}
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AUTHOR = {Jacob, Etai and Unger, Ron},
TITLE = {A tale of two tails: Why are terminal residues of proteins exposed?},
BOOKTITLE = {Proceedings of the 5th European Conference on Computational Biology, ECCB'2006 (Eilat, Israel, January 21-24, 2007)},
JOURNAL = {Bioinformatics},
VOLUME = {23},
NUMBER = {2},
PAGES = {225-230},
YEAR = {2007},
URL = {http://dx.doi.org/10.1093/bioinformatics/btl318},
PUBLISHER = {Oxford University Press},
}
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AUTHOR = {Iwasaki, Wataru and Takagi, Toshihisa},
TITLE = {Reconstruction of highly heterogeneous gene-content evolution across the three domains of life},
BOOKTITLE = {Proceedings of the 15th Annual International Conference on Intelligent Systems for Molecular Biology/6th European Conference on Computational Biology, ISMB'2007/ECCB'2007 (Vienna, Austria, July 21-25, 2007)},
JOURNAL = {Bioinformatics},
VOLUME = {23},
NUMBER = {13},
PAGES = {230-239},
YEAR = {2007},
URL = {http://dx.doi.org/10.1093/bioinformatics/btm165},
PUBLISHER = {Oxford University Press},
}
@article{Jacob-Horovitz-Unger/07,
AUTHOR = {Jacob, Etai and Horovitz, Amnon and Unger, Ron},
TITLE = {Different mechanistic requirements for prokaryotic and eukaryotic chaperonins: A lattice study},
BOOKTITLE = {Proceedings of the 15th Annual International Conference on Intelligent Systems for Molecular Biology/6th European Conference on Computational Biology, ISMB'2007/ECCB'2007 (Vienna, Austria, July 21-25, 2007)},
JOURNAL = {Bioinformatics},
VOLUME = {23},
NUMBER = {13},
PAGES = {240-248},
YEAR = {2007},
URL = {http://dx.doi.org/10.1093/bioinformatics/btm180},
PUBLISHER = {Oxford University Press},
}
@article{Bellora-Farre-Alba/07,
AUTHOR = {Bellora, Nicol{\'{a}}s and Farr{\'{e}}, Dom{\`{e}}nec and Alb{\`{a}}, M. Mar},
TITLE = {PEAKS: Identification of regulatory motifs by their position in DNA sequences},
JOURNAL = {Bioinformatics},
VOLUME = {23},
NUMBER = {2},
PAGES = {243-244},
YEAR = {2007},
URL = {http://dx.doi.org/10.1093/bioinformatics/btl568},
PUBLISHER = {Oxford University Press},
}
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AUTHOR = {Cathelin, R. and Lopez, F. and Klopp, Ch.},
TITLE = {AGScan: A pluggable microarray image quantification software based on the ImageJ library},
JOURNAL = {Bioinformatics},
VOLUME = {23},
NUMBER = {2},
PAGES = {247-248},
YEAR = {2007},
URL = {http://dx.doi.org/10.1093/bioinformatics/btl564},
PUBLISHER = {Oxford University Press},
}
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AUTHOR = {Kantorovitz, Miriam R. and Robinson, Gene E. and Sinha, Saurabh},
TITLE = {A statistical method for alignment-free comparison of regulatory sequences},
BOOKTITLE = {Proceedings of the 15th Annual International Conference on Intelligent Systems for Molecular Biology/6th European Conference on Computational Biology, ISMB'2007/ECCB'2007 (Vienna, Austria, July 21-25, 2007)},
JOURNAL = {Bioinformatics},
VOLUME = {23},
NUMBER = {13},
PAGES = {249-255},
YEAR = {2007},
URL = {http://dx.doi.org/10.1093/bioinformatics/btm211},
PUBLISHER = {Oxford University Press},
}
@article{Kelly-Jacobsen-Sun-Smith-Kardia/07,
AUTHOR = {Kelly, Reagan J. and Jacobsen, Douglas M. and Sun, Yan V. and Smith, Jennifer A. and Kardia, Sharon L.R.},
TITLE = {KGraph: A system for visualizing and evaluating complex genetic associations},
JOURNAL = {Bioinformatics},
VOLUME = {23},
NUMBER = {2},
PAGES = {249-251},
YEAR = {2007},
URL = {http://dx.doi.org/10.1093/bioinformatics/btl510},
PUBLISHER = {Oxford University Press},
}
@article{Hao-Di-Cawley/07,
AUTHOR = {Hao, K. and Di, X. and Cawley, S.},
TITLE = {LdCompare: Rapid computation of single- and multiple-marker $r^2$ and genetic coverage},
JOURNAL = {Bioinformatics},
VOLUME = {23},
NUMBER = {2},
PAGES = {252-254},
YEAR = {2007},
URL = {http://dx.doi.org/10.1093/bioinformatics/btl574},
PUBLISHER = {Oxford University Press},
}
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AUTHOR = {Falcon, S. and Gentleman, R.},
TITLE = {Using GOstats to test gene lists for GO term association},
JOURNAL = {Bioinformatics},
VOLUME = {23},
NUMBER = {2},
PAGES = {257-258},
YEAR = {2007},
URL = {http://dx.doi.org/10.1093/bioinformatics/btl567},
PUBLISHER = {Oxford University Press},
}
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AUTHOR = {Falkner, J.A. and Falkner, J.W. and Andrews, P.C.},
TITLE = {ProteomeCommons.org IO Framework: Reading and writing multiple proteomics data formats},
JOURNAL = {Bioinformatics},
VOLUME = {23},
NUMBER = {2},
PAGES = {262-263},
YEAR = {2007},
URL = {http://dx.doi.org/10.1093/bioinformatics/btl573},
PUBLISHER = {Oxford University Press},
}
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TITLE = {PrepMS: TOF MS data graphical preprocessing tool},
JOURNAL = {Bioinformatics},
VOLUME = {23},
NUMBER = {2},
PAGES = {264-265},
YEAR = {2007},
URL = {http://dx.doi.org/10.1093/bioinformatics/btl583},
PUBLISHER = {Oxford University Press},
}
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AUTHOR = {Kaderali, Lars and Zander, Thomas and Faigle, Ulrich and Wolf, J{\"u}rgen and Schultze, Joachim L. and Schrader, Rainer},
TITLE = {Erratum to ''CASPAR: A hierarchical Bayesian approach to predict survival times in cancer from gene expression data''},
JOURNAL = {Bioinformatics},
VOLUME = {23},
NUMBER = {2},
PAGES = {266-266},
YEAR = {2007},
URL = {http://dx.doi.org/10.1093/bioinformatics/btl576},
PUBLISHER = {Oxford University Press},
NOTE = {Originally in Bioinformatics, Vol. 22, 2006, No. 12, 1495-1502},
}
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AUTHOR = {Gultyaev, Alexander P. and Heus, Hans A. and Olsthoorn, Ren{\'{e}} C.L.},
TITLE = {An RNA conformational shift in recent H5N1 influenza A viruses},
JOURNAL = {Bioinformatics},
VOLUME = {23},
NUMBER = {3},
PAGES = {272-276},
YEAR = {2007},
URL = {http://dx.doi.org/10.1093/bioinformatics/btl559},
PUBLISHER = {Oxford University Press},
}
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AUTHOR = {Higdon, Roger and Kolker, Eugene},
TITLE = {A predictive model for identifying proteins by a single peptide match},
JOURNAL = {Bioinformatics},
VOLUME = {23},
NUMBER = {3},
PAGES = {277-280},
YEAR = {2007},
URL = {http://dx.doi.org/10.1093/bioinformatics/btl595},
PUBLISHER = {Oxford University Press},
}
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AUTHOR = {Goh, Liang and Murphy, Susan K. and Muhkerjee, Sayan and Furey, Terrence S.},
TITLE = {Genomic sweeping for hypermethylated genes},
JOURNAL = {Bioinformatics},
VOLUME = {23},
NUMBER = {3},
PAGES = {281-288},
YEAR = {2007},
URL = {http://dx.doi.org/10.1093/bioinformatics/btl620},
PUBLISHER = {Oxford University Press},
}
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TITLE = {Integrating transcription factor binding site information with gene expression datasets},
JOURNAL = {Bioinformatics},
VOLUME = {23},
NUMBER = {3},
PAGES = {298-305},
YEAR = {2007},
URL = {http://dx.doi.org/10.1093/bioinformatics/btl597},
PUBLISHER = {Oxford University Press},
}
@article{Jiang-Gentleman/07,
AUTHOR = {Jiang, Zhen and Gentleman, Robert},
TITLE = {Extensions to gene set enrichment},
JOURNAL = {Bioinformatics},
VOLUME = {23},
NUMBER = {3},
PAGES = {306-313},
YEAR = {2007},
URL = {http://dx.doi.org/10.1093/bioinformatics/btl599},
PUBLISHER = {Oxford University Press},
}
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TITLE = {A distribution free summarization method for Affymetrix GeneChip\textsuperscript{\textregistered} arrays},
JOURNAL = {Bioinformatics},
VOLUME = {23},
NUMBER = {3},
PAGES = {321-327},
YEAR = {2007},
URL = {http://dx.doi.org/10.1093/bioinformatics/btl609},
PUBLISHER = {Oxford University Press},
}
@article{Bagheri-Stelling-Doyle/07,
AUTHOR = {Bagheri, Neda and Stelling, J{\"{o}}rg and Doyle III, Francis J.},
TITLE = {Quantitative performance metrics for robustness in circadian rhythms},
JOURNAL = {Bioinformatics},
VOLUME = {23},
NUMBER = {3},
PAGES = {358-364},
YEAR = {2007},
URL = {http://dx.doi.org/10.1093/bioinformatics/btl627},
PUBLISHER = {Oxford University Press},
}
@article{Fundel-Kuffner-Zimmer/07,
AUTHOR = {Fundel, Katrin and K{\"{u}}ffner, Robert and Zimmer, Ralf},
TITLE = {RelEx --- Relation extraction using dependency parse trees},
JOURNAL = {Bioinformatics},
VOLUME = {23},
NUMBER = {3},
PAGES = {365-371},
YEAR = {2007},
URL = {http://dx.doi.org/10.1093/bioinformatics/btl616},
PUBLISHER = {Oxford University Press},
}
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AUTHOR = {Katoh, Kazutaka and Toh, Hiroyuki},
TITLE = {PartTree: An algorithm to build an approximate tree from a large number of unaligned sequences},
JOURNAL = {Bioinformatics},
VOLUME = {23},
NUMBER = {3},
PAGES = {372-374},
YEAR = {2007},
URL = {http://dx.doi.org/10.1093/bioinformatics/btl592},
PUBLISHER = {Oxford University Press},
}
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TITLE = {Crystallographic protein model-building on the web},
JOURNAL = {Bioinformatics},
VOLUME = {23},
NUMBER = {3},
PAGES = {375-377},
YEAR = {2007},
URL = {http://dx.doi.org/10.1093/bioinformatics/btl584},
PUBLISHER = {Oxford University Press},
}
@article{Fukui-Chen/07,
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TITLE = {NvMap: Automated analysis of NMR chemical shift perturbation data},
JOURNAL = {Bioinformatics},
VOLUME = {23},
NUMBER = {3},
PAGES = {378-380},
YEAR = {2007},
URL = {http://dx.doi.org/10.1093/bioinformatics/btl585},
PUBLISHER = {Oxford University Press},
}
@article{Cammer/07,
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JOURNAL = {Bioinformatics},
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NUMBER = {3},
PAGES = {383-384},
YEAR = {2007},
URL = {http://dx.doi.org/10.1093/bioinformatics/btl603},
PUBLISHER = {Oxford University Press},
}
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JOURNAL = {Bioinformatics},
VOLUME = {23},
NUMBER = {3},
PAGES = {385-386},
YEAR = {2007},
URL = {http://dx.doi.org/10.1093/bioinformatics/btl610},
PUBLISHER = {Oxford University Press},
}
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TITLE = {BioNetBuilder: Automatic integration of biological networks},
JOURNAL = {Bioinformatics},
VOLUME = {23},
NUMBER = {3},
PAGES = {392-393},
YEAR = {2007},
URL = {http://dx.doi.org/10.1093/bioinformatics/btl604},
PUBLISHER = {Oxford University Press},
}
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TITLE = {GOlorize: A Cytoscape plug-in for network visualization with Gene Ontology-based layout and coloring},
JOURNAL = {Bioinformatics},
VOLUME = {23},
NUMBER = {3},
PAGES = {394-396},
YEAR = {2007},
URL = {http://dx.doi.org/10.1093/bioinformatics/btl605},
PUBLISHER = {Oxford University Press},
}
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TITLE = {SNP2NMD: A database of human single nucleotide polymorphisms causing nonsense-mediated mRNA decay},
JOURNAL = {Bioinformatics},
VOLUME = {23},
NUMBER = {3},
PAGES = {397-399},
YEAR = {2007},
URL = {http://dx.doi.org/10.1093/bioinformatics/btl593},
PUBLISHER = {Oxford University Press},
}
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TITLE = {ADP\_EM: Fast exhaustive multi-resolution docking for high-throughput coverage},
JOURNAL = {Bioinformatics},
VOLUME = {23},
NUMBER = {4},
PAGES = {427-433},
YEAR = {2007},
URL = {http://dx.doi.org/10.1093/bioinformatics/btl625},
PUBLISHER = {Oxford University Press},
}
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JOURNAL = {Bioinformatics},
VOLUME = {23},
NUMBER = {4},
PAGES = {458-465},
YEAR = {2007},
URL = {http://dx.doi.org/10.1093/bioinformatics/btl630},
PUBLISHER = {Oxford University Press},
}
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TITLE = {Parameter estimation using Simulated Annealing for S-system models of biochemical networks},
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VOLUME = {23},
NUMBER = {4},
PAGES = {480-486},
YEAR = {2007},
URL = {http://dx.doi.org/10.1093/bioinformatics/btl522},
PUBLISHER = {Oxford University Press},
}
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TITLE = {Oligonucleotide microarray identification of Bacillus anthracis strains using support vector machines},
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VOLUME = {23},
NUMBER = {4},
PAGES = {487-492},
YEAR = {2007},
URL = {http://dx.doi.org/10.1093/bioinformatics/btl626},
PUBLISHER = {Oxford University Press},
}
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JOURNAL = {Bioinformatics},
VOLUME = {23},
NUMBER = {4},
PAGES = {493-495},
YEAR = {2007},
URL = {http://dx.doi.org/10.1093/bioinformatics/btl607},
PUBLISHER = {Oxford University Press},
}
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TITLE = {AutoGRAPH: An interactive web server for automating and visualizing comparative genome maps},
JOURNAL = {Bioinformatics},
VOLUME = {23},
NUMBER = {4},
PAGES = {498-499},
YEAR = {2007},
URL = {http://dx.doi.org/10.1093/bioinformatics/btl618},
PUBLISHER = {Oxford University Press},
}
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JOURNAL = {Bioinformatics},
VOLUME = {23},
NUMBER = {4},
PAGES = {502-503},
YEAR = {2007},
URL = {http://dx.doi.org/10.1093/bioinformatics/btl601},
PUBLISHER = {Oxford University Press},
}
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TITLE = {cBrother: Relaxing parental tree assumptions for Bayesian recombination detection},
JOURNAL = {Bioinformatics},
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NUMBER = {4},
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YEAR = {2007},
URL = {http://dx.doi.org/10.1093/bioinformatics/btl613},
PUBLISHER = {Oxford University Press},
}
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JOURNAL = {Bioinformatics},
VOLUME = {23},
NUMBER = {4},
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YEAR = {2007},
URL = {http://dx.doi.org/10.1093/bioinformatics/btl634},
PUBLISHER = {Oxford University Press},
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AUTHOR = {Hellenthal, Garrett and Stephens, Matthew},
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JOURNAL = {Bioinformatics},
VOLUME = {23},
NUMBER = {4},
PAGES = {520-521},
YEAR = {2007},
URL = {http://dx.doi.org/10.1093/bioinformatics/btl622},
PUBLISHER = {Oxford University Press},
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TITLE = {GGtools: Analysis of genetics of gene expression in bioconductor},
JOURNAL = {Bioinformatics},
VOLUME = {23},
NUMBER = {4},
PAGES = {522-523},
YEAR = {2007},
URL = {http://dx.doi.org/10.1093/bioinformatics/btl628},
PUBLISHER = {Oxford University Press},
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AUTHOR = {Jones, David T.},
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JOURNAL = {Bioinformatics},
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NUMBER = {5},
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YEAR = {2007},
URL = {http://dx.doi.org/10.1093/bioinformatics/btl677},
PUBLISHER = {Oxford University Press},
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JOURNAL = {Bioinformatics},
VOLUME = {23},
NUMBER = {5},
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YEAR = {2007},
URL = {http://dx.doi.org/10.1093/bioinformatics/btl659},
PUBLISHER = {Oxford University Press},
}
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TITLE = {A new protein-protein docking scoring function based on interface residue properties},
JOURNAL = {Bioinformatics},
VOLUME = {23},
NUMBER = {5},
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YEAR = {2007},
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PUBLISHER = {Oxford University Press},
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AUTHOR = {Chen, Jianping and Zhang, Xi and Fern{\'{a}}ndez, Ariel},
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JOURNAL = {Bioinformatics},
VOLUME = {23},
NUMBER = {5},
PAGES = {563-572},
YEAR = {2007},
URL = {http://dx.doi.org/10.1093/bioinformatics/btl666},
PUBLISHER = {Oxford University Press},
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AUTHOR = {Cockell, Simon J. and Oliva, Baldo and Jackson, Richard M.},
TITLE = {Structure-based evaluation of in silico predictions of protein-protein interactions using Comparative Docking},
JOURNAL = {Bioinformatics},
VOLUME = {23},
NUMBER = {5},
PAGES = {573-581},
YEAR = {2007},
URL = {http://dx.doi.org/10.1093/bioinformatics/btl661},
PUBLISHER = {Oxford University Press},
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TITLE = {Comparison of human protein-protein interaction maps},
JOURNAL = {Bioinformatics},
VOLUME = {23},
NUMBER = {5},
PAGES = {605-611},
YEAR = {2007},
URL = {http://dx.doi.org/10.1093/bioinformatics/btl683},
PUBLISHER = {Oxford University Press},
}
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AUTHOR = {Dutta, Debojyoti and Chen, Ting},
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JOURNAL = {Bioinformatics},
VOLUME = {23},
NUMBER = {5},
PAGES = {612-618},
YEAR = {2007},
URL = {http://dx.doi.org/10.1093/bioinformatics/btl645},
PUBLISHER = {Oxford University Press},
}
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JOURNAL = {Bioinformatics},
VOLUME = {23},
NUMBER = {5},
PAGES = {631-633},
YEAR = {2007},
URL = {http://dx.doi.org/10.1093/bioinformatics/btm008},
PUBLISHER = {Oxford University Press},
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JOURNAL = {Bioinformatics},
VOLUME = {23},
NUMBER = {5},
PAGES = {634-636},
YEAR = {2007},
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PUBLISHER = {Oxford University Press},
}
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TITLE = {SNPassoc: An R package to perform whole genome association studies},
JOURNAL = {Bioinformatics},
VOLUME = {23},
NUMBER = {5},
PAGES = {644-645},
YEAR = {2007},
URL = {http://dx.doi.org/10.1093/bioinformatics/btm025},
PUBLISHER = {Oxford University Press},
}
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TITLE = {APOPTO-CELL --- A simulation tool and interactive database for analyzing cellular susceptibility to apoptosis},
JOURNAL = {Bioinformatics},
VOLUME = {23},
NUMBER = {5},
PAGES = {648-650},
YEAR = {2007},
URL = {http://dx.doi.org/10.1093/bioinformatics/btl684},
PUBLISHER = {Oxford University Press},
}
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TITLE = {BioWeka --- Extending the Weka framework for bioinformatics},
JOURNAL = {Bioinformatics},
VOLUME = {23},
NUMBER = {5},
PAGES = {651-653},
YEAR = {2007},
URL = {http://dx.doi.org/10.1093/bioinformatics/btl671},
PUBLISHER = {Oxford University Press},
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TITLE = {The ESID Online Database network},
JOURNAL = {Bioinformatics},
VOLUME = {23},
NUMBER = {5},
PAGES = {654-655},
YEAR = {2007},
URL = {http://dx.doi.org/10.1093/bioinformatics/btl675},
PUBLISHER = {Oxford University Press},
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TITLE = {Deleterious SNP prediction: Be mindful of your training data!},
JOURNAL = {Bioinformatics},
VOLUME = {23},
NUMBER = {6},
PAGES = {664-672},
YEAR = {2007},
URL = {http://dx.doi.org/10.1093/bioinformatics/btl649},
PUBLISHER = {Oxford University Press},
}
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TITLE = {Identifying bacterial genes and endosymbiont DNA with Glimmer},
JOURNAL = {Bioinformatics},
VOLUME = {23},
NUMBER = {6},
PAGES = {673-679},
YEAR = {2007},
URL = {http://dx.doi.org/10.1093/bioinformatics/btm009},
PUBLISHER = {Oxford University Press},
}
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TITLE = {A 3D pattern matching algorithm for DNA sequences},
JOURNAL = {Bioinformatics},
VOLUME = {23},
NUMBER = {6},
PAGES = {680-686},
YEAR = {2007},
URL = {http://dx.doi.org/10.1093/bioinformatics/btl669},
PUBLISHER = {Oxford University Press},
}
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AUTHOR = {Brodzik, Andrzej K.},
TITLE = {Quaternionic periodicity transform: An algebraic solution to the tandem repeat detection problem},
JOURNAL = {Bioinformatics},
VOLUME = {23},
NUMBER = {6},
PAGES = {694-700},
YEAR = {2007},
URL = {http://dx.doi.org/10.1093/bioinformatics/btl674},
PUBLISHER = {Oxford University Press},
}
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TITLE = {Hardware acceleration of processing of mass spectrometric data for proteomics},
JOURNAL = {Bioinformatics},
VOLUME = {23},
NUMBER = {6},
PAGES = {724-731},
YEAR = {2007},
URL = {http://dx.doi.org/10.1093/bioinformatics/btl656},
PUBLISHER = {Oxford University Press},
}
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AUTHOR = {Hua, Dong and Lai, Yinglei},
TITLE = {An ensemble approach to microarray data-based gene prioritization after missing value imputation},
JOURNAL = {Bioinformatics},
VOLUME = {23},
NUMBER = {6},
PAGES = {747-754},
YEAR = {2007},
URL = {http://dx.doi.org/10.1093/bioinformatics/btm010},
PUBLISHER = {Oxford University Press},
}
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TITLE = {TreeQ-VISTA: An interactive tree visualization tool with functional annotation query capabilities},
JOURNAL = {Bioinformatics},
VOLUME = {23},
NUMBER = {6},
PAGES = {764-766},
YEAR = {2007},
URL = {http://dx.doi.org/10.1093/bioinformatics/btl643},
PUBLISHER = {Oxford University Press},
}
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AUTHOR = {Gr{\"{u}}nberg, Raik and Nilges, Michael and Leckner, Johan},
TITLE = {Biskit --- A software platform for structural bioinformatics},
JOURNAL = {Bioinformatics},
VOLUME = {23},
NUMBER = {6},
PAGES = {769-770},
YEAR = {2007},
URL = {http://dx.doi.org/10.1093/bioinformatics/btl655},
PUBLISHER = {Oxford University Press},
}
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JOURNAL = {Bioinformatics},
VOLUME = {23},
NUMBER = {6},
PAGES = {771-773},
YEAR = {2007},
URL = {http://dx.doi.org/10.1093/bioinformatics/btl641},
PUBLISHER = {Oxford University Press},
}
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TITLE = {AphidBase: A database for aphid genomic resources},
JOURNAL = {Bioinformatics},
VOLUME = {23},
NUMBER = {6},
PAGES = {783-784},
YEAR = {2007},
URL = {http://dx.doi.org/10.1093/bioinformatics/btl682},
PUBLISHER = {Oxford University Press},
}
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TITLE = {Large scale genotype-phenotype correlation analysis based on phylogenetic trees},
JOURNAL = {Bioinformatics},
VOLUME = {23},
NUMBER = {7},
PAGES = {785-788},
YEAR = {2007},
URL = {http://dx.doi.org/10.1093/bioinformatics/btm003},
PUBLISHER = {Oxford University Press},
}
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TITLE = {PhyloGena --- A user-friendly system for automated phylogenetic annotation of unknown sequences},
JOURNAL = {Bioinformatics},
VOLUME = {23},
NUMBER = {7},
PAGES = {793-801},
YEAR = {2007},
URL = {http://dx.doi.org/10.1093/bioinformatics/btm016},
PUBLISHER = {Oxford University Press},
}
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JOURNAL = {Bioinformatics},
VOLUME = {23},
NUMBER = {7},
PAGES = {809-814},
YEAR = {2007},
URL = {http://dx.doi.org/10.1093/bioinformatics/btm034},
PUBLISHER = {Oxford University Press},
}
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TITLE = {Assessment of phylogenomic and orthology approaches for phylogenetic inference},
JOURNAL = {Bioinformatics},
VOLUME = {23},
NUMBER = {7},
PAGES = {815-824},
YEAR = {2007},
URL = {http://dx.doi.org/10.1093/bioinformatics/btm015},
PUBLISHER = {Oxford University Press},
}
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TITLE = {A simulation test bed for hypotheses of genome evolution},
JOURNAL = {Bioinformatics},
VOLUME = {23},
NUMBER = {7},
PAGES = {825-831},
YEAR = {2007},
URL = {http://dx.doi.org/10.1093/bioinformatics/btm024},
PUBLISHER = {Oxford University Press},
}
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TITLE = {A new versatile database created for geneticists and breeders to link molecular and phenotypic data in perennial crops: The AppleBreed DataBase},
JOURNAL = {Bioinformatics},
VOLUME = {23},
NUMBER = {7},
PAGES = {882-891},
YEAR = {2007},
URL = {http://dx.doi.org/10.1093/bioinformatics/btm013},
PUBLISHER = {Oxford University Press},
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JOURNAL = {Bioinformatics},
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NUMBER = {7},
PAGES = {895-897},
YEAR = {2007},
URL = {http://dx.doi.org/10.1093/bioinformatics/btm020},
PUBLISHER = {Oxford University Press},
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TITLE = {DFprot: A webtool for predicting local chain deformability},
JOURNAL = {Bioinformatics},
VOLUME = {23},
NUMBER = {7},
PAGES = {901-902},
YEAR = {2007},
URL = {http://dx.doi.org/10.1093/bioinformatics/btm014},
PUBLISHER = {Oxford University Press},
}
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NUMBER = {7},
PAGES = {903-905},
YEAR = {2007},
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JOURNAL = {Bioinformatics},
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NUMBER = {7},
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YEAR = {2007},
URL = {http://dx.doi.org/10.1093/bioinformatics/btm032},
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YEAR = {2007},
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JOURNAL = {Bioinformatics},
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YEAR = {2007},
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PAGES = {950-956},
YEAR = {2007},
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JOURNAL = {Bioinformatics},
VOLUME = {23},
NUMBER = {8},
PAGES = {980-987},
YEAR = {2007},
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JOURNAL = {Bioinformatics},
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YEAR = {2007},
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JOURNAL = {Bioinformatics},
VOLUME = {23},
NUMBER = {8},
PAGES = {1046-1047},
YEAR = {2007},
URL = {http://dx.doi.org/10.1093/bioinformatics/btm075},
PUBLISHER = {Oxford University Press},
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}
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YEAR = {2007},
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PUBLISHER = {Oxford University Press},
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PAGES = {1148-1155},
YEAR = {2007},
URL = {http://dx.doi.org/10.1093/bioinformatics/btm068},
PUBLISHER = {Oxford University Press},
}
@article{Brameier-Krings-MacCallum/07,
AUTHOR = {Brameier, Markus and Krings, Andrea and MacCallum, Robert M.},
TITLE = {NucPred --- Predicting nuclear localization of proteins},
JOURNAL = {Bioinformatics},
VOLUME = {23},
NUMBER = {9},
PAGES = {1159-1160},
YEAR = {2007},
URL = {http://dx.doi.org/10.1093/bioinformatics/btm066},
PUBLISHER = {Oxford University Press},
}
@article{Blom-Bosman-van_Hijum-Breitling-Tijsma-Silvis-Roerdink-Kuipers/07,
AUTHOR = {Blom, Evert-Jan and Bosman, Dinne W.J. and van Hijum, Sacha A.F.T. and Breitling, Rainer and Tijsma, Lars and Silvis, Remko and Roerdink, Jos B.T.M. and Kuipers, Oscar P.},
TITLE = {FIVA: Functional Information Viewer and Analyzer extracting biological knowledge from transcriptome data of prokaryotes},
JOURNAL = {Bioinformatics},
VOLUME = {23},
NUMBER = {9},
PAGES = {1161-1163},
YEAR = {2007},
URL = {http://dx.doi.org/10.1093/bioinformatics/btl658},
PUBLISHER = {Oxford University Press},
}
@article{Diez-Alvarez-Dopazo/07,
AUTHOR = {Diez, Diego and Alvarez, Rebeca and Dopazo, Ana},
TITLE = {Codelink: An R package for analysis of GE healthcare gene expression bioarrays},
JOURNAL = {Bioinformatics},
VOLUME = {23},
NUMBER = {9},
PAGES = {1168-1169},
YEAR = {2007},
URL = {http://dx.doi.org/10.1093/bioinformatics/btm072},
PUBLISHER = {Oxford University Press},
}
@article{Frickey-Weiller/07a,
AUTHOR = {Frickey, Tancred and Weiller, Georg},
TITLE = {Analyzing microarray data using CLANS},
JOURNAL = {Bioinformatics},
VOLUME = {23},
NUMBER = {9},
PAGES = {1170-1171},
YEAR = {2007},
URL = {http://dx.doi.org/10.1093/bioinformatics/btm079},
PUBLISHER = {Oxford University Press},
}
@article{Fremez-Faraut-Fichant-Gouzy-Quentin/07,
AUTHOR = {Fremez, Romain and Faraut, Thomas and Fichant, Gwennaele and Gouzy, J{\'{e}}r{\^{o}}me and Quentin, Yves},
TITLE = {Phylogenetic exploration of bacterial genomic rearrangements},
JOURNAL = {Bioinformatics},
VOLUME = {23},
NUMBER = {9},
PAGES = {1172-1174},
YEAR = {2007},
URL = {http://dx.doi.org/10.1093/bioinformatics/btm070},
PUBLISHER = {Oxford University Press},
}
@article{Gordon-Trinh-Sensen/07,
AUTHOR = {Gordon, Paul M.K. and Trinh, Quang and Sensen, Christoph W.},
TITLE = {Semantic Web Service provision: A realistic framework for Bioinformatics programmers},
JOURNAL = {Bioinformatics},
VOLUME = {23},
NUMBER = {9},
PAGES = {1178-1180},
YEAR = {2007},
URL = {http://dx.doi.org/10.1093/bioinformatics/btm060},
PUBLISHER = {Oxford University Press},
}
@article{Feng-Tillier/07,
AUTHOR = {Feng, Shengzhong and Tillier, Elisabeth R.M.},
TITLE = {A fast and flexible approach to oligonucleotide probe design for genomes and gene families},
JOURNAL = {Bioinformatics},
VOLUME = {23},
NUMBER = {10},
PAGES = {1195-1202},
YEAR = {2007},
URL = {http://dx.doi.org/10.1093/bioinformatics/btm114},
PUBLISHER = {Oxford University Press},
}
@article{Gewehr-Hintermair-Zimmer/07,
AUTHOR = {Gewehr, Jan E. and Hintermair, Volker and Zimmer, Ralf},
TITLE = {AutoSCOP: Automated prediction of SCOP classifications using unique pattern-class mappings},
JOURNAL = {Bioinformatics},
VOLUME = {23},
NUMBER = {10},
PAGES = {1203-1210},
YEAR = {2007},
URL = {http://dx.doi.org/10.1093/bioinformatics/btm089},
PUBLISHER = {Oxford University Press},
}
@article{Carlson/07,
AUTHOR = {Carlson, Ross P.},
TITLE = {Metabolic systems cost-benefit analysis for interpreting network structure and regulation},
JOURNAL = {Bioinformatics},
VOLUME = {23},
NUMBER = {10},
PAGES = {1258-1264},
YEAR = {2007},
URL = {http://dx.doi.org/10.1093/bioinformatics/btm082},
PUBLISHER = {Oxford University Press},
NOTE = {see Erratum in Bioinformatics, Vol. 23, 2007, No. 16, 2202-2202},
}
@article{Huang-Gromiha-Ho/07,
AUTHOR = {Huang, Liang-Tsung and Gromiha, M. Michael and Ho, Shinn-Ying},
TITLE = {iPTREE-STAB: Interpretable decision tree based method for predicting protein stability changes upon mutations},
JOURNAL = {Bioinformatics},
VOLUME = {23},
NUMBER = {10},
PAGES = {1292-1293},
YEAR = {2007},
URL = {http://dx.doi.org/10.1093/bioinformatics/btm100},
PUBLISHER = {Oxford University Press},
}
@article{Aulchenko-Ripke-Isaacs-van_Duijn/07,
AUTHOR = {Aulchenko, Yurii S. and Ripke, Stephan and Isaacs, Aaron and van Duijn, Cornelia M.},
TITLE = {GenABEL: An R library for genome-wide association analysis},
JOURNAL = {Bioinformatics},
VOLUME = {23},
NUMBER = {10},
PAGES = {1294-1296},
YEAR = {2007},
URL = {http://dx.doi.org/10.1093/bioinformatics/btm108},
PUBLISHER = {Oxford University Press},
}
@article{Cohen-Boulakia-Biton-Davidson-Froidevaux/07,
AUTHOR = {Cohen-Boulakia, Sarah and Biton, Olivier and Davidson, Susan and Froidevaux, Christine},
TITLE = {BioGuideSRS: Querying multiple sources with a user-centric perspective},
JOURNAL = {Bioinformatics},
VOLUME = {23},
NUMBER = {10},
PAGES = {1301-1303},
YEAR = {2007},
URL = {http://dx.doi.org/10.1093/bioinformatics/btm088},
PUBLISHER = {Oxford University Press},
}
@article{Grabe-Neuber/07,
AUTHOR = {Grabe, Niels and Neuber, Karsten},
TITLE = {Simulating psoriasis by altering transit amplifying cells},
JOURNAL = {Bioinformatics},
VOLUME = {23},
NUMBER = {11},
PAGES = {1309-1312},
YEAR = {2007},
URL = {http://dx.doi.org/10.1093/bioinformatics/btm042},
PUBLISHER = {Oxford University Press},
}
@article{Jackson-Fitzgerald/07,
AUTHOR = {Jackson, Edmund S. and Fitzgerald, William J.},
TITLE = {A sequential Monte Carlo EM approach to the transcription factor binding site identification problem},
JOURNAL = {Bioinformatics},
VOLUME = {23},
NUMBER = {11},
PAGES = {1313-1320},
YEAR = {2007},
URL = {http://dx.doi.org/10.1093/bioinformatics/btm054},
PUBLISHER = {Oxford University Press},
}
@article{Kemp-Nirmala-Szustakowski/07,
AUTHOR = {Kemp, Daniel M. and Nirmala, N.R. and Szustakowski, Joseph D.},
TITLE = {Extending the pathway analysis framework with a test for transcriptional variance implicates novel pathway modulation during myogenic differentiation},
JOURNAL = {Bioinformatics},
VOLUME = {23},
NUMBER = {11},
PAGES = {1356-1362},
YEAR = {2007},
URL = {http://dx.doi.org/10.1093/bioinformatics/btm116},
PUBLISHER = {Oxford University Press},
}
@article{Castiglione-Duca-Jarrah-Laubenbacher-Hochberg-Thorley-Lawson/07,
AUTHOR = {Castiglione, Filippo and Duca, Karen and Jarrah, Abdul and Laubenbacher, Reinhard and Hochberg, Donna and Thorley-Lawson, David},
TITLE = {Simulating Epstein-Barr virus infection with C-ImmSim},
JOURNAL = {Bioinformatics},
VOLUME = {23},
NUMBER = {11},
PAGES = {1371-1377},
YEAR = {2007},
URL = {http://dx.doi.org/10.1093/bioinformatics/btm044},
PUBLISHER = {Oxford University Press},
}
@article{Alekseyenko-Lee/07,
AUTHOR = {Alekseyenko, Alexander V. and Lee, Christopher J.},
TITLE = {Nested Containment List (NCList): A new algorithm for accelerating interval query of genome alignment and interval databases},
JOURNAL = {Bioinformatics},
VOLUME = {23},
NUMBER = {11},
PAGES = {1386-1393},
YEAR = {2007},
URL = {http://dx.doi.org/10.1093/bioinformatics/btl647},
PUBLISHER = {Oxford University Press},
}
@article{Du-Sudha-Prystowsky-Angeletti/07,
AUTHOR = {Du, Peicheng and Sudha, Rajagopalan and Prystowsky, Michael B. and Angeletti, Ruth Hogue},
TITLE = {Data reduction of isotope-resolved LC-MS spectra},
JOURNAL = {Bioinformatics},
VOLUME = {23},
NUMBER = {11},
PAGES = {1394-1400},
YEAR = {2007},
URL = {http://dx.doi.org/10.1093/bioinformatics/btm083},
PUBLISHER = {Oxford University Press},
}
@article{Day-Hemmaplardh-Thurman-Stamatoyannopoulos-Noble/07,
AUTHOR = {Day, Nathan and Hemmaplardh, Andrew and Thurman, Robert E. and Stamatoyannopoulos, John A. and Noble, William S.},
TITLE = {Unsupervised segmentation of continuous genomic data},
JOURNAL = {Bioinformatics},
VOLUME = {23},
NUMBER = {11},
PAGES = {1424-1426},
YEAR = {2007},
URL = {http://dx.doi.org/10.1093/bioinformatics/btm096},
PUBLISHER = {Oxford University Press},
}
@article{Cartwright/07,
AUTHOR = {Cartwright, Reed A.},
TITLE = {Ngila: Global pairwise alignments with logarithmic and affine gap costs},
JOURNAL = {Bioinformatics},
VOLUME = {23},
NUMBER = {11},
PAGES = {1427-1428},
YEAR = {2007},
URL = {http://dx.doi.org/10.1093/bioinformatics/btm095},
PUBLISHER = {Oxford University Press},
}
@article{Freudenberg-Fu-Ptacek/07,
AUTHOR = {Freudenberg, Jan and Fu, Ying-Hui and Pt{\'{a}}{\v{c}}ek, Louis J.},
TITLE = {Human recombination rates are increased around accelerated conserved regions --- Evidence for continued selection?},
JOURNAL = {Bioinformatics},
VOLUME = {23},
NUMBER = {12},
PAGES = {1441-1443},
YEAR = {2007},
URL = {http://dx.doi.org/10.1093/bioinformatics/btm137},
PUBLISHER = {Oxford University Press},
}
@article{Coghlan-Durbin/07,
AUTHOR = {Coghlan, Avril and Durbin, Richard},
TITLE = {Genomix: A method for combining gene-finders' predictions, which uses evolutionary conservation of sequence and intron-exon structure},
JOURNAL = {Bioinformatics},
VOLUME = {23},
NUMBER = {12},
PAGES = {1468-1475},
YEAR = {2007},
URL = {http://dx.doi.org/10.1093/bioinformatics/btm133},
PUBLISHER = {Oxford University Press},
}
@article{Huang-Chow/07,
AUTHOR = {Huang, D. and Chow, Tommy W.S.},
TITLE = {Identifying the biologically relevant gene categories based on gene expression and biological data: An example on prostate cancer},
JOURNAL = {Bioinformatics},
VOLUME = {23},
NUMBER = {12},
PAGES = {1503-1510},
YEAR = {2007},
URL = {http://dx.doi.org/10.1093/bioinformatics/btm141},
PUBLISHER = {Oxford University Press},
}
@article{Ching-Zhang-Ng-Akutsu/07,
AUTHOR = {Ching, Wai-Ki and Zhang, Shuqin and Ng, Michael K. and Akutsu, Tatsuya},
TITLE = {An approximation method for solving the steady-state probability distribution of probabilistic Boolean networks},
JOURNAL = {Bioinformatics},
VOLUME = {23},
NUMBER = {12},
PAGES = {1511-1518},
YEAR = {2007},
URL = {http://dx.doi.org/10.1093/bioinformatics/btm142},
PUBLISHER = {Oxford University Press},
}
@article{Goll-Bauer/07,
AUTHOR = {Goll, Alexandra and Bauer, Peter},
TITLE = {Two-stage designs applying methods differing in costs},
JOURNAL = {Bioinformatics},
VOLUME = {23},
NUMBER = {12},
PAGES = {1519-1526},
YEAR = {2007},
URL = {http://dx.doi.org/10.1093/bioinformatics/btm140},
PUBLISHER = {Oxford University Press},
}
@article{Goode-Rodrigo/07,
AUTHOR = {Goode, Matthew G. and Rodrigo, Allen G.},
TITLE = {SQUINT: A multiple alignment program and editor},
JOURNAL = {Bioinformatics},
VOLUME = {23},
NUMBER = {12},
PAGES = {1553-1555},
YEAR = {2007},
URL = {http://dx.doi.org/10.1093/bioinformatics/btm128},
PUBLISHER = {Oxford University Press},
}
@article{Eschrich-Hoerter/07,
AUTHOR = {Eschrich, Steven A. and Hoerter, Andrew M.},
TITLE = {Libaffy: Software for processing Affymetrix(R) GeneChip(R) data},
JOURNAL = {Bioinformatics},
VOLUME = {23},
NUMBER = {12},
PAGES = {1562-1564},
YEAR = {2007},
URL = {http://dx.doi.org/10.1093/bioinformatics/btm127},
PUBLISHER = {Oxford University Press},
}
@article{Finn-Stalker-Jackson-Kulesha-Clements-Pettett/07,
AUTHOR = {Finn, Robert D. and Stalker, James W. and Jackson, David K. and Kulesha, Eugene and Clements, Jody and Pettett, Roger},
TITLE = {ProServer: A simple, extensible Perl DAS server},
JOURNAL = {Bioinformatics},
VOLUME = {23},
NUMBER = {12},
PAGES = {1568-1570},
YEAR = {2007},
URL = {http://dx.doi.org/10.1093/bioinformatics/btl650},
PUBLISHER = {Oxford University Press},
}
@article{Gaeta-Malming-Jackson-Bain-Wilson-Collins/07,
AUTHOR = {Ga{\"{e}}ta, Bruno A. and Malming, Harald R. and Jackson, Katherine J.L. and Bain, Michael E. and Wilson, Patrick and Collins, Andrew M.},
TITLE = {iHMMune-align: Hidden Markov model-based alignment and identification of germline genes in rearranged immunoglobulin gene sequences},
JOURNAL = {Bioinformatics},
VOLUME = {23},
NUMBER = {13},
PAGES = {1580-1587},
YEAR = {2007},
URL = {http://dx.doi.org/10.1093/bioinformatics/btm147},
PUBLISHER = {Oxford University Press},
}
@article{Fishel-Kaufman-Ruppin/07,
AUTHOR = {Fishel, Irit and Kaufman, Alon and Ruppin, Eytan},
TITLE = {Meta-analysis of gene expression data: A predictor-based approach},
JOURNAL = {Bioinformatics},
VOLUME = {23},
NUMBER = {13},
PAGES = {1599-1606},
YEAR = {2007},
URL = {http://dx.doi.org/10.1093/bioinformatics/btm149},
PUBLISHER = {Oxford University Press},
}
@article{Guimera-Sales-Pardo-Amaral/07,
AUTHOR = {Guimer{\`{a}}, R. and Sales-Pardo, M. and Amaral, L.A.N.},
TITLE = {A network-based method for target selection in metabolic networks},
JOURNAL = {Bioinformatics},
VOLUME = {23},
NUMBER = {13},
PAGES = {1616-1622},
YEAR = {2007},
URL = {http://dx.doi.org/10.1093/bioinformatics/btm150},
PUBLISHER = {Oxford University Press},
}
@article{Fujita-Sato-Garay-Malpartida-Morettin-Sogayar-Ferreira/07,
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TITLE = {Time-varying modeling of gene expression regulatory networks using the wavelet dynamic vector autoregressive method},
JOURNAL = {Bioinformatics},
VOLUME = {23},
NUMBER = {13},
PAGES = {1623-1630},
YEAR = {2007},
URL = {http://dx.doi.org/10.1093/bioinformatics/btm151},
PUBLISHER = {Oxford University Press},
}
@article{Jaqaman-Dorn-Marco-Sorger-Danuser/07,
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TITLE = {Phenotypic clustering of yeast mutants based on kinetochore microtubule dynamics},
JOURNAL = {Bioinformatics},
VOLUME = {23},
NUMBER = {13},
PAGES = {1666-1673},
YEAR = {2007},
URL = {http://dx.doi.org/10.1093/bioinformatics/btm230},
PUBLISHER = {Oxford University Press},
}
@article{Bittner-Goldberg/07,
AUTHOR = {Bittner, Thomas and Goldberg, Louis J.},
TITLE = {The qualitative and time-dependent character of spatial relations in biomedical ontologies},
JOURNAL = {Bioinformatics},
VOLUME = {23},
NUMBER = {13},
PAGES = {1674-1682},
YEAR = {2007},
URL = {http://dx.doi.org/10.1093/bioinformatics/btm155},
PUBLISHER = {Oxford University Press},
}
@article{Gambin-Wojtalewicz/07,
AUTHOR = {Gambin, Anna and Wojtalewicz, Piotr},
TITLE = {CTX-BLAST: Context sensitive version of protein BLAST},
JOURNAL = {Bioinformatics},
VOLUME = {23},
NUMBER = {13},
PAGES = {1686-1688},
YEAR = {2007},
URL = {http://dx.doi.org/10.1093/bioinformatics/btm136},
PUBLISHER = {Oxford University Press},
}
@article{Dicks-Teague-Stephens-Raine-Yates-Mattocks-Tarpey-Butler-Menzies-Richardson-Jenkinson-Davies-Edkins-Forbes-Gray-Greenman-Shepherd-Stratton-Futreal-Wooster/07,
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TITLE = {AutoCSA, an algorithm for high throughput DNA sequence variant detection in cancer genomes},
JOURNAL = {Bioinformatics},
VOLUME = {23},
NUMBER = {13},
PAGES = {1689-1691},
YEAR = {2007},
URL = {http://dx.doi.org/10.1093/bioinformatics/btm152},
PUBLISHER = {Oxford University Press},
}
@article{Hayes-Nilsen-Berg-Grindflek-Lien/07,
AUTHOR = {Hayes, Ben J. and Nilsen, Kjetil and Berg, Paul R. and Grindflek, Eli and Lien, Sigbj{\o}rn},
TITLE = {SNP detection exploiting multiple sources of redundancy in large EST collections improves validation rates},
JOURNAL = {Bioinformatics},
VOLUME = {23},
NUMBER = {13},
PAGES = {1692-1693},
YEAR = {2007},
URL = {http://dx.doi.org/10.1093/bioinformatics/btm154},
PUBLISHER = {Oxford University Press},
}
@article{Contreras-Moreira-Branger-Collado-Vides/07,
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TITLE = {TFmodeller: Comparative modelling of protein-DNA complexes},
JOURNAL = {Bioinformatics},
VOLUME = {23},
NUMBER = {13},
PAGES = {1694-1696},
YEAR = {2007},
URL = {http://dx.doi.org/10.1093/bioinformatics/btm148},
PUBLISHER = {Oxford University Press},
}
@article{Boulesteix/07,
AUTHOR = {Boulesteix, Anne-Laure},
TITLE = {WilcoxCV: An R package for fast variable selection in cross-validation},
JOURNAL = {Bioinformatics},
VOLUME = {23},
NUMBER = {13},
PAGES = {1702-1704},
YEAR = {2007},
URL = {http://dx.doi.org/10.1093/bioinformatics/btm162},
PUBLISHER = {Oxford University Press},
}
@article{Huffner-Wernicke-Zichner/07,
AUTHOR = {H{\"{u}}ffner, Falk and Wernicke, Sebastian and Zichner, Thomas},
TITLE = {FASPAD: Fast signaling pathway detection},
JOURNAL = {Bioinformatics},
VOLUME = {23},
NUMBER = {13},
PAGES = {1708-1709},
YEAR = {2007},
URL = {http://dx.doi.org/10.1093/bioinformatics/btm160},
PUBLISHER = {Oxford University Press},
}
@article{Hochreiter-Heusel-Obermayer/07,
AUTHOR = {Hochreiter, Sepp and Heusel, Martin and Obermayer, Klaus},
TITLE = {Fast model-based protein homology detection without alignment},
JOURNAL = {Bioinformatics},
VOLUME = {23},
NUMBER = {14},
PAGES = {1728-1736},
YEAR = {2007},
URL = {http://dx.doi.org/10.1093/bioinformatics/btm247},
PUBLISHER = {Oxford University Press},
}
@article{Hertzberg-Izraeli-Domany/07,
AUTHOR = {Hertzberg, Libi and Izraeli, Shai and Domany, Eytan},
TITLE = {STOP: Searching for transcription factor motifs using gene expression},
JOURNAL = {Bioinformatics},
VOLUME = {23},
NUMBER = {14},
PAGES = {1737-1743},
YEAR = {2007},
URL = {http://dx.doi.org/10.1093/bioinformatics/btm249},
PUBLISHER = {Oxford University Press},
}
@article{Kasson-Zomorodian-Park-Singhal-Guibas-Pande/07,
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TITLE = {Persistent voids: A new structural metric for membrane fusion},
JOURNAL = {Bioinformatics},
VOLUME = {23},
NUMBER = {14},
PAGES = {1753-1759},
YEAR = {2007},
URL = {http://dx.doi.org/10.1093/bioinformatics/btm250},
PUBLISHER = {Oxford University Press},
}
@article{Bagler-Sinha/07,
AUTHOR = {Bagler, Ganesh and Sinha, Somdatta},
TITLE = {Assortative mixing in Protein Contact Networks and protein folding kinetics},
JOURNAL = {Bioinformatics},
VOLUME = {23},
NUMBER = {14},
PAGES = {1760-1767},
YEAR = {2007},
URL = {http://dx.doi.org/10.1093/bioinformatics/btm257},
PUBLISHER = {Oxford University Press},
}
@article{Brynildsen-Wu-Jang-Liao/07,
AUTHOR = {Brynildsen, Mark P. and Wu, Tung-Yun and Jang, Shi-Shang and Liao, James C.},
TITLE = {Biological network mapping and source signal deduction},
JOURNAL = {Bioinformatics},
VOLUME = {23},
NUMBER = {14},
PAGES = {1783-1791},
YEAR = {2007},
URL = {http://dx.doi.org/10.1093/bioinformatics/btm246},
PUBLISHER = {Oxford University Press},
}
@article{Jakobsson-Rosenberg/07,
AUTHOR = {Jakobsson, Mattias and Rosenberg, Noah A.},
TITLE = {CLUMPP: A cluster matching and permutation program for dealing with label switching and multimodality in analysis of population structure},
JOURNAL = {Bioinformatics},
VOLUME = {23},
NUMBER = {14},
PAGES = {1801-1806},
YEAR = {2007},
URL = {http://dx.doi.org/10.1093/bioinformatics/btm233},
PUBLISHER = {Oxford University Press},
}
@article{Bhasi-Pandey-Utharasamy-Senapathy/07,
AUTHOR = {Bhasi, Ashwini and Pandey, Ram Vinay and Utharasamy, Suriya Prabha and Senapathy, Periannan},
TITLE = {EuSplice: A unified resource for the analysis of splice signals and alternative splicing in eukaryotic genes},
JOURNAL = {Bioinformatics},
VOLUME = {23},
NUMBER = {14},
PAGES = {1815-1823},
YEAR = {2007},
URL = {http://dx.doi.org/10.1093/bioinformatics/btm084},
PUBLISHER = {Oxford University Press},
}
@article{Kerhornou-Guigo/07,
AUTHOR = {Kerhornou, Arnaud and Guig{\'{o}}, Roderic},
TITLE = {BioMoby web services to support clustering of co-regulated genes based on similarity of promoter configurations},
JOURNAL = {Bioinformatics},
VOLUME = {23},
NUMBER = {14},
PAGES = {1831-1833},
YEAR = {2007},
URL = {http://dx.doi.org/10.1093/bioinformatics/btm252},
PUBLISHER = {Oxford University Press},
}
@article{Beaussart-3rd-Bornberg-Bauer/07,
AUTHOR = {Beaussart, Francois and 3rd, January Weiner and Bornberg-Bauer, Erich},
TITLE = {Automated Improvement of Domain ANnotations using context analysis of domain arrangements (AIDAN)},
JOURNAL = {Bioinformatics},
VOLUME = {23},
NUMBER = {14},
PAGES = {1834-1836},
YEAR = {2007},
URL = {http://dx.doi.org/10.1093/bioinformatics/btm240},
PUBLISHER = {Oxford University Press},
}
@article{Eyal-Pietrokovski-Bahar/07,
AUTHOR = {Eyal, Eran and Pietrokovski, Shmuel and Bahar, Ivet},
TITLE = {Rapid assessment of correlated amino acids from pair-to-pair (P2P) substitution matrices},
JOURNAL = {Bioinformatics},
VOLUME = {23},
NUMBER = {14},
PAGES = {1837-1839},
YEAR = {2007},
URL = {http://dx.doi.org/10.1093/bioinformatics/btm256},
PUBLISHER = {Oxford University Press},
}
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URL = {http://dx.doi.org/10.1093/bioinformatics/btm377},
PUBLISHER = {Oxford University Press},
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TITLE = {Query-driven module discovery in microarray data},
JOURNAL = {Bioinformatics},
VOLUME = {23},
NUMBER = {19},
PAGES = {2573-2580},
YEAR = {2007},
URL = {http://dx.doi.org/10.1093/bioinformatics/btm387},
PUBLISHER = {Oxford University Press},
}
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AUTHOR = {Heron, Elizabeth A. and Finkenst{\"{a}}dt, B{\"{a}}rbel and Rand, David A.},
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JOURNAL = {Bioinformatics},
VOLUME = {23},
NUMBER = {19},
PAGES = {2596-2603},
YEAR = {2007},
URL = {http://dx.doi.org/10.1093/bioinformatics/btm367},
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JOURNAL = {Bioinformatics},
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YEAR = {2007},
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JOURNAL = {Bioinformatics},
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NUMBER = {19},
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YEAR = {2007},
URL = {http://dx.doi.org/10.1093/bioinformatics/btm288},
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TITLE = {THOR: Targeted high-throughput ortholog reconstructor},
JOURNAL = {Bioinformatics},
VOLUME = {23},
NUMBER = {19},
PAGES = {2622-2624},
YEAR = {2007},
URL = {http://dx.doi.org/10.1093/bioinformatics/btl513},
PUBLISHER = {Oxford University Press},
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JOURNAL = {Bioinformatics},
VOLUME = {23},
NUMBER = {19},
PAGES = {2628-2630},
YEAR = {2007},
URL = {http://dx.doi.org/10.1093/bioinformatics/btm379},
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TITLE = {Eu.Gene Analyzer a tool for integrating gene expression data with pathway databases},
JOURNAL = {Bioinformatics},
VOLUME = {23},
NUMBER = {19},
PAGES = {2631-2632},
YEAR = {2007},
URL = {http://dx.doi.org/10.1093/bioinformatics/btm333},
PUBLISHER = {Oxford University Press},
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JOURNAL = {Bioinformatics},
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NUMBER = {19},
PAGES = {2633-2635},
YEAR = {2007},
URL = {http://dx.doi.org/10.1093/bioinformatics/btm308},
PUBLISHER = {Oxford University Press},
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TITLE = {VisGenome: Visualization of single and comparative genome representations},
JOURNAL = {Bioinformatics},
VOLUME = {23},
NUMBER = {19},
PAGES = {2641-2642},
YEAR = {2007},
URL = {http://dx.doi.org/10.1093/bioinformatics/btm394},
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TITLE = {DNA reference alignment benchmarks based on tertiary structure of encoded proteins},
JOURNAL = {Bioinformatics},
VOLUME = {23},
NUMBER = {19},
PAGES = {2648-2649},
YEAR = {2007},
URL = {http://dx.doi.org/10.1093/bioinformatics/btm389},
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JOURNAL = {Bioinformatics},
VOLUME = {23},
NUMBER = {20},
PAGES = {2660-2664},
YEAR = {2007},
URL = {http://dx.doi.org/10.1093/bioinformatics/btm411},
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TITLE = {Structure-based calculation of drug efficiency indices},
JOURNAL = {Bioinformatics},
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NUMBER = {20},
PAGES = {2678-2685},
YEAR = {2007},
URL = {http://dx.doi.org/10.1093/bioinformatics/btm431},
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NUMBER = {20},
PAGES = {2692-2699},
YEAR = {2007},
URL = {http://dx.doi.org/10.1093/bioinformatics/btm403},
PUBLISHER = {Oxford University Press},
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TITLE = {Fun\&Co: Identification of key functional differences in transcriptomes},
JOURNAL = {Bioinformatics},
VOLUME = {23},
NUMBER = {20},
PAGES = {2725-2732},
YEAR = {2007},
URL = {http://dx.doi.org/10.1093/bioinformatics/btm425},
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TITLE = {A syntactic model to design and verify synthetic genetic constructs derived from standard biological parts},
JOURNAL = {Bioinformatics},
VOLUME = {23},
NUMBER = {20},
PAGES = {2760-2767},
YEAR = {2007},
URL = {http://dx.doi.org/10.1093/bioinformatics/btm446},
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TITLE = {Mining biological networks for unknown pathways},
JOURNAL = {Bioinformatics},
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NUMBER = {20},
PAGES = {2775-2783},
YEAR = {2007},
URL = {http://dx.doi.org/10.1093/bioinformatics/btm409},
PUBLISHER = {Oxford University Press},
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TITLE = {TMpro web server and web service: Transmembrane helix prediction through amino acid property analysis},
JOURNAL = {Bioinformatics},
VOLUME = {23},
NUMBER = {20},
PAGES = {2795-2796},
YEAR = {2007},
URL = {http://dx.doi.org/10.1093/bioinformatics/btm398},
PUBLISHER = {Oxford University Press},
}
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AUTHOR = {Jenwitheesuk, Ekachai and Samudrala, Ram},
TITLE = {Identification of potential HIV-1 targets of minocycline},
JOURNAL = {Bioinformatics},
VOLUME = {23},
NUMBER = {20},
PAGES = {2797-2799},
YEAR = {2007},
URL = {http://dx.doi.org/10.1093/bioinformatics/btm424},
PUBLISHER = {Oxford University Press},
}
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AUTHOR = {Berger, Seth I. and Iyengar, Ravi and Ma'ayan, Avi},
TITLE = {AVIS: AJAX viewer of interactive signaling networks},
JOURNAL = {Bioinformatics},
VOLUME = {23},
NUMBER = {20},
PAGES = {2803-2805},
YEAR = {2007},
URL = {http://dx.doi.org/10.1093/bioinformatics/btm444},
PUBLISHER = {Oxford University Press},
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JOURNAL = {Bioinformatics},
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NUMBER = {21},
PAGES = {2807-2815},
YEAR = {2007},
URL = {http://dx.doi.org/10.1093/bioinformatics/btm390},
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JOURNAL = {Bioinformatics},
VOLUME = {23},
NUMBER = {21},
PAGES = {2823-2828},
YEAR = {2007},
URL = {http://dx.doi.org/10.1093/bioinformatics/btm473},
PUBLISHER = {Oxford University Press},
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JOURNAL = {Bioinformatics},
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NUMBER = {21},
PAGES = {2843-2850},
YEAR = {2007},
URL = {http://dx.doi.org/10.1093/bioinformatics/btm475},
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PAGES = {2851-2858},
YEAR = {2007},
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JOURNAL = {Bioinformatics},
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YEAR = {2007},
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JOURNAL = {Bioinformatics},
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YEAR = {2007},
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JOURNAL = {Bioinformatics},
VOLUME = {23},
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YEAR = {2007},
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JOURNAL = {Bioinformatics},
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NUMBER = {21},
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JOURNAL = {Bioinformatics},
VOLUME = {23},
NUMBER = {21},
PAGES = {2934-2941},
YEAR = {2007},
URL = {http://dx.doi.org/10.1093/bioinformatics/btm430},
PUBLISHER = {Oxford University Press},
}
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TITLE = {Extending assembly of short DNA sequences to handle error},
JOURNAL = {Bioinformatics},
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NUMBER = {21},
PAGES = {2942-2944},
YEAR = {2007},
URL = {http://dx.doi.org/10.1093/bioinformatics/btm451},
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NUMBER = {22},
PAGES = {2993-3000},
YEAR = {2007},
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YEAR = {2007},
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YEAR = {2007},
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JOURNAL = {Bioinformatics},
VOLUME = {23},
NUMBER = {22},
PAGES = {3095-3097},
YEAR = {2007},
URL = {http://dx.doi.org/10.1093/bioinformatics/btm492},
PUBLISHER = {Oxford University Press},
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JOURNAL = {Bioinformatics},
VOLUME = {23},
NUMBER = {22},
PAGES = {3100-3102},
YEAR = {2007},
URL = {http://dx.doi.org/10.1093/bioinformatics/btm460},
PUBLISHER = {Oxford University Press},
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TITLE = {CellMontage: Similar expression profile search server},
JOURNAL = {Bioinformatics},
VOLUME = {23},
NUMBER = {22},
PAGES = {3103-3104},
YEAR = {2007},
URL = {http://dx.doi.org/10.1093/bioinformatics/btm462},
PUBLISHER = {Oxford University Press},
NOTE = {see Erratum in Bioinformatics, Vol. 24, 2008, No. 9, 1223-1223},
}
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JOURNAL = {Bioinformatics},
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NUMBER = {22},
PAGES = {3110-3112},
YEAR = {2007},
URL = {http://dx.doi.org/10.1093/bioinformatics/btm395},
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JOURNAL = {Bioinformatics},
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NUMBER = {23},
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YEAR = {2007},
URL = {http://dx.doi.org/10.1093/bioinformatics/btm506},
PUBLISHER = {Oxford University Press},
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TITLE = {Analysis and identification of $\beta$-turn types using multinomial logistic regression and artificial neural network},
JOURNAL = {Bioinformatics},
VOLUME = {23},
NUMBER = {23},
PAGES = {3125-3130},
YEAR = {2007},
URL = {http://dx.doi.org/10.1093/bioinformatics/btm324},
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JOURNAL = {Bioinformatics},
VOLUME = {23},
NUMBER = {23},
PAGES = {3131-3138},
YEAR = {2007},
URL = {http://dx.doi.org/10.1093/bioinformatics/btm499},
PUBLISHER = {Oxford University Press},
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VOLUME = {23},
NUMBER = {23},
PAGES = {3162-3169},
YEAR = {2007},
URL = {http://dx.doi.org/10.1093/bioinformatics/btm487},
PUBLISHER = {Oxford University Press},
}
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AUTHOR = {Hao, K.},
TITLE = {Genome-wide selection of tag SNPs using multiple-marker correlation},
JOURNAL = {Bioinformatics},
VOLUME = {23},
NUMBER = {23},
PAGES = {3178-3184},
YEAR = {2007},
URL = {http://dx.doi.org/10.1093/bioinformatics/btm496},
PUBLISHER = {Oxford University Press},
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TITLE = {Steady-state expression of self-regulated genes},
JOURNAL = {Bioinformatics},
VOLUME = {23},
NUMBER = {23},
PAGES = {3185-3192},
YEAR = {2007},
URL = {http://dx.doi.org/10.1093/bioinformatics/btm490},
PUBLISHER = {Oxford University Press},
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JOURNAL = {Bioinformatics},
VOLUME = {23},
NUMBER = {23},
PAGES = {3200-3208},
YEAR = {2007},
URL = {http://dx.doi.org/10.1093/bioinformatics/btm504},
PUBLISHER = {Oxford University Press},
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JOURNAL = {Bioinformatics},
VOLUME = {23},
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PAGES = {3232-3240},
YEAR = {2007},
URL = {http://dx.doi.org/10.1093/bioinformatics/btm495},
PUBLISHER = {Oxford University Press},
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AUTHOR = {Bradley, Robert K. and Holmes, Ian},
TITLE = {Transducers: An emerging probabilistic framework for modeling indels on trees},
JOURNAL = {Bioinformatics},
VOLUME = {23},
NUMBER = {23},
PAGES = {3258-3262},
YEAR = {2007},
URL = {http://dx.doi.org/10.1093/bioinformatics/btm402},
PUBLISHER = {Oxford University Press},
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JOURNAL = {Bioinformatics},
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PAGES = {3263-3264},
YEAR = {2007},
URL = {http://dx.doi.org/10.1093/bioinformatics/btm432},
PUBLISHER = {Oxford University Press},
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AUTHOR = {Dinkel, Holger and Sticht, Heinrich},
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JOURNAL = {Bioinformatics},
VOLUME = {23},
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YEAR = {2007},
URL = {http://dx.doi.org/10.1093/bioinformatics/btm524},
PUBLISHER = {Oxford University Press},
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JOURNAL = {Bioinformatics},
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YEAR = {2007},
URL = {http://dx.doi.org/10.1093/bioinformatics/btm515},
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JOURNAL = {Bioinformatics},
VOLUME = {23},
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YEAR = {2007},
URL = {http://dx.doi.org/10.1093/bioinformatics/btm508},
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JOURNAL = {Bioinformatics},
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URL = {http://dx.doi.org/10.1093/bioinformatics/btm526},
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YEAR = {2007},
URL = {http://dx.doi.org/10.1093/bioinformatics/btm408},
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JOURNAL = {Bioinformatics},
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YEAR = {2007},
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VOLUME = {23},
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YEAR = {2007},
URL = {http://dx.doi.org/10.1093/bioinformatics/btm520},
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AUTHOR = {Hollich, Volker and Sonnhammer, Erik L.L.},
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JOURNAL = {Bioinformatics},
VOLUME = {23},
NUMBER = {24},
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YEAR = {2007},
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PUBLISHER = {Oxford University Press},
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JOURNAL = {Bioinformatics},
VOLUME = {23},
NUMBER = {24},
PAGES = {3388-3390},
YEAR = {2007},
URL = {http://dx.doi.org/10.1093/bioinformatics/btm454},
PUBLISHER = {Oxford University Press},
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JOURNAL = {Bioinformatics},
VOLUME = {23},
NUMBER = {24},
PAGES = {3391-3393},
YEAR = {2007},
URL = {http://dx.doi.org/10.1093/bioinformatics/btm459},
PUBLISHER = {Oxford University Press},
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AUTHOR = {Hu, Min and Wang, Junhui and Peng, Qunsheng},
TITLE = {Identification and visualization of cage-shaped proteins},
JOURNAL = {Bioinformatics},
VOLUME = {23},
NUMBER = {24},
PAGES = {3400-3402},
YEAR = {2007},
URL = {http://dx.doi.org/10.1093/bioinformatics/btm476},
PUBLISHER = {Oxford University Press},
}