@article{Aoki-Ueda-Yamaguchi-Kanehisa-Akutsu-Mamitsuka/04,
AUTHOR = {Aoki, Kiyoko F. and Ueda, Nobuhisa and Yamaguchi, Atsuko and Kanehisa, Minoru and Akutsu, Tatsuya and Mamitsuka, Hiroshi},
TITLE = {Application of a new probabilistic model for recognizing complex patterns in glycans},
BOOKTITLE = {Proceedings of the 12th International Conference on Intelligent Systems for Molecular Biology/3rd European Conference on Computational Biology, ISMB'2004/ECCB'2004 (Glasgow, UK, July 31 - August 4, 2004)},
JOURNAL = {Bioinformatics},
VOLUME = {20},
NUMBER = {S1},
PAGES = {6-14},
YEAR = {2004},
URL = {http://bioinformatics.oxfordjournals.org/cgi/content/abstract/20/suppl_1/i6},
PUBLISHER = {Oxford University Press},
}
@article{Baral-Chancellor-Tran-Tran-Joy-Berens/04,
AUTHOR = {Baral, C. and Chancellor, K. and Tran, N. and Tran, N.L. and Joy, A. and Berens, M.},
TITLE = {A knowledge based approach for representing and reasoning about signaling networks},
BOOKTITLE = {Proceedings of the 12th International Conference on Intelligent Systems for Molecular Biology/3rd European Conference on Computational Biology, ISMB'2004/ECCB'2004 (Glasgow, UK, July 31 - August 4, 2004)},
JOURNAL = {Bioinformatics},
VOLUME = {20},
NUMBER = {S1},
PAGES = {15-22},
YEAR = {2004},
URL = {http://bioinformatics.oxfordjournals.org/cgi/content/abstract/20/suppl_1/i15},
PUBLISHER = {Oxford University Press},
}
@article{Huang-Li/04,
AUTHOR = {Huang, Ying and Li, Yanda},
TITLE = {Prediction of protein subcellular locations using fuzzy $k$-NN method},
JOURNAL = {Bioinformatics},
VOLUME = {20},
NUMBER = {1},
PAGES = {21-28},
YEAR = {2004},
URL = {http://bioinformatics.oxfordjournals.org/cgi/content/abstract/20/1/21},
PUBLISHER = {Oxford University Press},
}
@article{Bar-Joseph-Farkash-Gifford-Simon-Rosenfeld/04,
AUTHOR = {Bar-Joseph, Ziv and Farkash, Shlomit and Gifford, David K. and Simon, Itamar and Rosenfeld, Roni},
TITLE = {Deconvolving cell cycle expression data with complementary information},
BOOKTITLE = {Proceedings of the 12th International Conference on Intelligent Systems for Molecular Biology/3rd European Conference on Computational Biology, ISMB'2004/ECCB'2004 (Glasgow, UK, July 31 - August 4, 2004)},
JOURNAL = {Bioinformatics},
VOLUME = {20},
NUMBER = {S1},
PAGES = {23-30},
YEAR = {2004},
URL = {http://bioinformatics.oxfordjournals.org/cgi/content/abstract/20/suppl_1/i23},
PUBLISHER = {Oxford University Press},
}
@article{Beissbarth-Hyde-Smyth-Job-Boon-Tan-Scott-Speed/04,
AUTHOR = {Bei{\ss}barth, Tim and Hyde, Lavinia and Smyth, Gordon K. and Job, Chris and Boon, Wee-Ming and Tan, Seong-Seng and Scott, Hamish S. and Speed, Terence P.},
TITLE = {Statistical modeling of sequencing errors in SAGE libraries},
BOOKTITLE = {Proceedings of the 12th International Conference on Intelligent Systems for Molecular Biology/3rd European Conference on Computational Biology, ISMB'2004/ECCB'2004 (Glasgow, UK, July 31 - August 4, 2004)},
JOURNAL = {Bioinformatics},
VOLUME = {20},
NUMBER = {S1},
PAGES = {31-39},
YEAR = {2004},
URL = {http://bioinformatics.oxfordjournals.org/cgi/content/abstract/20/suppl_1/i31},
PUBLISHER = {Oxford University Press},
}
@article{Bejerano-Haussler-Blanchette/04,
AUTHOR = {Bejerano, Gill and Haussler, David and Blanchette, Mathieu},
TITLE = {Into the heart of darkness: Large-scale clustering of human non-coding DNA},
BOOKTITLE = {Proceedings of the 12th International Conference on Intelligent Systems for Molecular Biology/3rd European Conference on Computational Biology, ISMB'2004/ECCB'2004 (Glasgow, UK, July 31 - August 4, 2004)},
JOURNAL = {Bioinformatics},
VOLUME = {20},
NUMBER = {S1},
PAGES = {40-48},
YEAR = {2004},
URL = {http://bioinformatics.oxfordjournals.org/cgi/content/abstract/20/suppl_1/i40},
PUBLISHER = {Oxford University Press},
}
@article{Kim/04,
AUTHOR = {Kim, Saejoon},
TITLE = {Protein $\beta$-turn prediction using nearest-neighbor method},
JOURNAL = {Bioinformatics},
VOLUME = {20},
NUMBER = {1},
PAGES = {40-44},
YEAR = {2004},
URL = {http://bioinformatics.oxfordjournals.org/cgi/content/abstract/20/1/40},
PUBLISHER = {Oxford University Press},
}
@article{Comeau-Gatchell-Vajda-Camacho/04,
AUTHOR = {Comeau, Stephen R. and Gatchell, David W. and Vajda, Sandor and Camacho, Carlos J.},
TITLE = {ClusPro: An automated docking and discrimination method for the prediction of protein complexes},
JOURNAL = {Bioinformatics},
VOLUME = {20},
NUMBER = {1},
PAGES = {45-50},
YEAR = {2004},
URL = {http://bioinformatics.oxfordjournals.org/cgi/content/abstract/20/1/45},
PUBLISHER = {Oxford University Press},
}
@article{Bern-Goldberg-McDonald-Yates/04,
AUTHOR = {Bern, Marshall and Goldberg, David and McDonald, W. Hayes and Yates III, John R.},
TITLE = {Automatic Quality Assessment of peptide Tandem Mass Spectra},
BOOKTITLE = {Proceedings of the 12th International Conference on Intelligent Systems for Molecular Biology/3rd European Conference on Computational Biology, ISMB'2004/ECCB'2004 (Glasgow, UK, July 31 - August 4, 2004)},
JOURNAL = {Bioinformatics},
VOLUME = {20},
NUMBER = {S1},
PAGES = {49-54},
YEAR = {2004},
URL = {http://bioinformatics.oxfordjournals.org/cgi/content/abstract/20/suppl_1/i49},
PUBLISHER = {Oxford University Press},
}
@article{Betel-Isserlin-Hogue/04,
AUTHOR = {Betel, Doron and Isserlin, Ruth and Hogue, Christopher W.V.},
TITLE = {Analysis of domain correlations in yeast protein complexes},
BOOKTITLE = {Proceedings of the 12th International Conference on Intelligent Systems for Molecular Biology/3rd European Conference on Computational Biology, ISMB'2004/ECCB'2004 (Glasgow, UK, July 31 - August 4, 2004)},
JOURNAL = {Bioinformatics},
VOLUME = {20},
NUMBER = {S1},
PAGES = {55-62},
YEAR = {2004},
URL = {http://bioinformatics.oxfordjournals.org/cgi/content/abstract/20/suppl_1/i55},
PUBLISHER = {Oxford University Press},
}
@article{Capriotti-Fariselli-Casadio/04,
AUTHOR = {Capriotti, Emidio and Fariselli, Piero and Casadio, Rita},
TITLE = {A neural-network-based method for predicting protein stability changes upon single point mutations},
BOOKTITLE = {Proceedings of the 12th International Conference on Intelligent Systems for Molecular Biology/3rd European Conference on Computational Biology, ISMB'2004/ECCB'2004 (Glasgow, UK, July 31 - August 4, 2004)},
JOURNAL = {Bioinformatics},
VOLUME = {20},
NUMBER = {S1},
PAGES = {63-68},
YEAR = {2004},
URL = {http://bioinformatics.oxfordjournals.org/cgi/content/abstract/20/suppl_1/i63},
PUBLISHER = {Oxford University Press},
}
@article{Castelo-Guigo/04,
AUTHOR = {Castelo, Robert and Guig{\'{o}}, Roderic},
TITLE = {Splice site identification by idlBNs},
BOOKTITLE = {Proceedings of the 12th International Conference on Intelligent Systems for Molecular Biology/3rd European Conference on Computational Biology, ISMB'2004/ECCB'2004 (Glasgow, UK, July 31 - August 4, 2004)},
JOURNAL = {Bioinformatics},
VOLUME = {20},
NUMBER = {S1},
PAGES = {69-76},
YEAR = {2004},
URL = {http://bioinformatics.oxfordjournals.org/cgi/content/abstract/20/suppl_1/i69},
PUBLISHER = {Oxford University Press},
}
@article{Chen-Bahar/04,
AUTHOR = {Chen, Shann-Ching and Bahar, Ivet},
TITLE = {Mining frequent patterns in protein structures: A study of protease families},
BOOKTITLE = {Proceedings of the 12th International Conference on Intelligent Systems for Molecular Biology/3rd European Conference on Computational Biology, ISMB'2004/ECCB'2004 (Glasgow, UK, July 31 - August 4, 2004)},
JOURNAL = {Bioinformatics},
VOLUME = {20},
NUMBER = {S1},
PAGES = {77-85},
YEAR = {2004},
URL = {http://bioinformatics.oxfordjournals.org/cgi/content/abstract/20/suppl_1/i77},
PUBLISHER = {Oxford University Press},
}
@article{Boulakia-Lair-Stransky-Graziani-Radvanyi-Barillot-Froidevaux/04,
AUTHOR = {Boulakia, Sarah Cohen and Lair, S{\'{e}}verine and Stransky, Nicolas and Graziani, St{\'{e}}phane and Radvanyi, Fran{\c{c}}ois and Barillot, Emmanuel and Froidevaux, Christine},
TITLE = {Selecting biomedical data sources according to user preferences},
BOOKTITLE = {Proceedings of the 12th International Conference on Intelligent Systems for Molecular Biology/3rd European Conference on Computational Biology, ISMB'2004/ECCB'2004 (Glasgow, UK, July 31 - August 4, 2004)},
JOURNAL = {Bioinformatics},
VOLUME = {20},
NUMBER = {S1},
PAGES = {86-93},
YEAR = {2004},
URL = {http://bioinformatics.oxfordjournals.org/cgi/content/abstract/20/suppl_1/i86},
PUBLISHER = {Oxford University Press},
}
@article{Goeman-van_de_Geer-de_Kort-van_Houwelingen/04,
AUTHOR = {Goeman, Jelle J. and van de Geer, Sara A. and de Kort, Floor and van Houwelingen, Hans C.},
TITLE = {A global test for groups of genes: Testing association with a clinical outcome},
JOURNAL = {Bioinformatics},
VOLUME = {20},
NUMBER = {1},
PAGES = {93-99},
YEAR = {2004},
URL = {http://bioinformatics.oxfordjournals.org/cgi/content/abstract/20/1/93},
PUBLISHER = {Oxford University Press},
}
@article{Coin-Durbin/04,
AUTHOR = {Coin, L. and Durbin, R.},
TITLE = {Improved techniques for the identification of pseudogenes},
BOOKTITLE = {Proceedings of the 12th International Conference on Intelligent Systems for Molecular Biology/3rd European Conference on Computational Biology, ISMB'2004/ECCB'2004 (Glasgow, UK, July 31 - August 4, 2004)},
JOURNAL = {Bioinformatics},
VOLUME = {20},
NUMBER = {S1},
PAGES = {94-100},
YEAR = {2004},
URL = {http://bioinformatics.oxfordjournals.org/cgi/content/abstract/20/suppl_1/i94},
PUBLISHER = {Oxford University Press},
}
@article{Benito-Parker-Du-Wu-Xiang-Perou-Marron/04,
AUTHOR = {Benito, Monica and Parker, Joel and Du, Quan and Wu, Junyuan and Xiang, Dong and Perou, Charles M. and Marron, J.S.},
TITLE = {Adjustment of systematic microarray data biases},
JOURNAL = {Bioinformatics},
VOLUME = {20},
NUMBER = {1},
PAGES = {105-114},
YEAR = {2004},
URL = {http://bioinformatics.oxfordjournals.org/cgi/content/abstract/20/1/105},
PUBLISHER = {Oxford University Press},
}
@article{Dieterich-Rahmann-Vingron/04,
AUTHOR = {Dieterich, Christoph and Rahmann, Sven and Vingron, Martin},
TITLE = {Functional inference from non-random distributions of conserved predicted transcription factor binding sites},
BOOKTITLE = {Proceedings of the 12th International Conference on Intelligent Systems for Molecular Biology/3rd European Conference on Computational Biology, ISMB'2004/ECCB'2004 (Glasgow, UK, July 31 - August 4, 2004)},
JOURNAL = {Bioinformatics},
VOLUME = {20},
NUMBER = {S1},
PAGES = {109-115},
YEAR = {2004},
URL = {http://bioinformatics.oxfordjournals.org/cgi/content/abstract/20/suppl_1/i109},
PUBLISHER = {Oxford University Press},
}
@article{Dopazo-Santoyo-Dopazo/04,
AUTHOR = {Dopazo, Hern{\'{a}}n and Santoyo, Javier and Dopazo, Joaqu{\'{i}}n},
TITLE = {Phylogenomics and the number of characters required for obtaining an accurate phylogeny of eukaryote model species},
BOOKTITLE = {Proceedings of the 12th International Conference on Intelligent Systems for Molecular Biology/3rd European Conference on Computational Biology, ISMB'2004/ECCB'2004 (Glasgow, UK, July 31 - August 4, 2004)},
JOURNAL = {Bioinformatics},
VOLUME = {20},
NUMBER = {S1},
PAGES = {116-121},
YEAR = {2004},
URL = {http://bioinformatics.oxfordjournals.org/cgi/content/abstract/20/suppl_1/i116},
PUBLISHER = {Oxford University Press},
}
@article{Chiang-Yu-Hsu/04,
AUTHOR = {Chiang, Jung-Hsien and Yu, Hsu-Chun and Hsu, Huai-Jen},
TITLE = {GIS: A biomedical text-mining system for gene information discovery},
JOURNAL = {Bioinformatics},
VOLUME = {20},
NUMBER = {1},
PAGES = {120-121},
YEAR = {2004},
URL = {http://bioinformatics.oxfordjournals.org/cgi/content/abstract/20/1/120},
PUBLISHER = {Oxford University Press},
}
@article{Darling-Mau-Blattner-Perna/04,
AUTHOR = {Darling, Aaron E. and Mau, Bob and Blattner, Frederick R. and Perna, Nicole T.},
TITLE = {GRIL: Genome rearrangement and inversion locator},
JOURNAL = {Bioinformatics},
VOLUME = {20},
NUMBER = {1},
PAGES = {122-124},
YEAR = {2004},
URL = {http://bioinformatics.oxfordjournals.org/cgi/content/abstract/20/1/122},
PUBLISHER = {Oxford University Press},
}
@article{Enosh-Fleishman-Ben-Tal-Halperin/04,
AUTHOR = {Enosh, Angela and Fleishman, Sarel J. and Ben-Tal, Nir and Halperin, Dan},
TITLE = {Assigning transmembrane segments to helices in intermediate-resolution structures},
BOOKTITLE = {Proceedings of the 12th International Conference on Intelligent Systems for Molecular Biology/3rd European Conference on Computational Biology, ISMB'2004/ECCB'2004 (Glasgow, UK, July 31 - August 4, 2004)},
JOURNAL = {Bioinformatics},
VOLUME = {20},
NUMBER = {S1},
PAGES = {122-129},
YEAR = {2004},
URL = {http://bioinformatics.oxfordjournals.org/cgi/content/abstract/20/suppl_1/i122},
PUBLISHER = {Oxford University Press},
}
@article{Bluthgen-Kielbasa-Cajavec-Herzel/04,
AUTHOR = {Bl{\"u}thgen, Nils and Kie{\l}basa, Szymon M. and {\v{C}}ajavec, Branka and Herzel, Hanspeter},
TITLE = {HomGL --- Comparing genelists across species and with different accession numbers},
JOURNAL = {Bioinformatics},
VOLUME = {20},
NUMBER = {1},
PAGES = {125-126},
YEAR = {2004},
URL = {http://bioinformatics.oxfordjournals.org/cgi/content/abstract/20/1/125},
PUBLISHER = {Oxford University Press},
}
@article{George-Spriggs-Thornton-Al-Lazikani-Swindells/04,
AUTHOR = {George, Richard A. and Spriggs, Ruth V. and Thornton, Janet M. and Al-Lazikani, Bissan and Swindells, Mark B.},
TITLE = {SCOPEC: A database of protein catalytic domains},
BOOKTITLE = {Proceedings of the 12th International Conference on Intelligent Systems for Molecular Biology/3rd European Conference on Computational Biology, ISMB'2004/ECCB'2004 (Glasgow, UK, July 31 - August 4, 2004)},
JOURNAL = {Bioinformatics},
VOLUME = {20},
NUMBER = {S1},
PAGES = {130-136},
YEAR = {2004},
URL = {http://bioinformatics.oxfordjournals.org/cgi/content/abstract/20/suppl_1/i130},
PUBLISHER = {Oxford University Press},
}
@article{Cserzo-Eisenhaber-Eisenhaber-Simon/04,
AUTHOR = {Cserzo, Miklos and Eisenhaber, Frank and Eisenhaber, Birgit and Simon, Istvan},
TITLE = {TM or not TM: Transmembrane protein prediction with low false positive rate using DAS-TMfilter},
JOURNAL = {Bioinformatics},
VOLUME = {20},
NUMBER = {1},
PAGES = {136-137},
YEAR = {2004},
URL = {http://bioinformatics.oxfordjournals.org/cgi/content/abstract/20/1/136},
PUBLISHER = {Oxford University Press},
}
@article{Greenspan-Geiger/04,
AUTHOR = {Greenspan, G. and Geiger, D.},
TITLE = {High density linkage disequilibrium mapping using models of haplotype block variation},
BOOKTITLE = {Proceedings of the 12th International Conference on Intelligent Systems for Molecular Biology/3rd European Conference on Computational Biology, ISMB'2004/ECCB'2004 (Glasgow, UK, July 31 - August 4, 2004)},
JOURNAL = {Bioinformatics},
VOLUME = {20},
NUMBER = {S1},
PAGES = {137-144},
YEAR = {2004},
URL = {http://bioinformatics.oxfordjournals.org/cgi/content/abstract/20/suppl_1/i137},
PUBLISHER = {Oxford University Press},
}
@article{Emrich-Aluru-Fu-Wen-Narayanan-Guo-Ashlock-Schnable/04,
AUTHOR = {Emrich, Scott J. and Aluru, Srinivas and Fu, Yan and Wen, Tsui-Jung and Narayanan, Mahesh and Guo, Ling and Ashlock, Daniel A. and Schnable, Patrick S.},
TITLE = {A strategy for assembling the maize (Zea mays L.) genome},
JOURNAL = {Bioinformatics},
VOLUME = {20},
NUMBER = {2},
PAGES = {140-147},
YEAR = {2004},
URL = {http://bioinformatics.oxfordjournals.org/cgi/content/abstract/20/2/140},
PUBLISHER = {Oxford University Press},
}
@article{Gunduz-Yener-Gultekin/04,
AUTHOR = {Gunduz, Cigdem and Yener, B{\"{u}}lent and Gultekin, S. Humayun},
TITLE = {The cell graphs of cancer},
BOOKTITLE = {Proceedings of the 12th International Conference on Intelligent Systems for Molecular Biology/3rd European Conference on Computational Biology, ISMB'2004/ECCB'2004 (Glasgow, UK, July 31 - August 4, 2004)},
JOURNAL = {Bioinformatics},
VOLUME = {20},
NUMBER = {S1},
PAGES = {145-151},
YEAR = {2004},
URL = {http://bioinformatics.oxfordjournals.org/cgi/content/abstract/20/suppl_1/i145},
PUBLISHER = {Oxford University Press},
}
@article{Heida-Hasegawa-Mochizuki-Hirosawa-Konagaya-Toyoda/04,
AUTHOR = {Heida, Naohiko and Hasegawa, Yoshikazu and Mochizuki, Yoshiki and Hirosawa, Katsura and Konagaya, Akihiko and Toyoda, Tetsuro},
TITLE = {TraitMap: An XML-based genetic-map database combining multigenic loci and biomolecular networks},
BOOKTITLE = {Proceedings of the 12th International Conference on Intelligent Systems for Molecular Biology/3rd European Conference on Computational Biology, ISMB'2004/ECCB'2004 (Glasgow, UK, July 31 - August 4, 2004)},
JOURNAL = {Bioinformatics},
VOLUME = {20},
NUMBER = {S1},
PAGES = {152-160},
YEAR = {2004},
URL = {http://bioinformatics.oxfordjournals.org/cgi/content/abstract/20/suppl_1/i152},
PUBLISHER = {Oxford University Press},
}
@article{Juretic-Bureau-Bruskiewich/04,
AUTHOR = {Juretic, Nikoleta and Bureau, Thomas E. and Bruskiewich, Richard M.},
TITLE = {Transposable element annotation of the rice genome},
JOURNAL = {Bioinformatics},
VOLUME = {20},
NUMBER = {2},
PAGES = {155-160},
YEAR = {2004},
URL = {http://bioinformatics.oxfordjournals.org/cgi/content/abstract/20/2/155},
PUBLISHER = {Oxford University Press},
}
@article{Jojic-Jojic-Meek-Geiger-Siepel-Haussler-Heckerman/04,
AUTHOR = {Jojic, Vladimir and Jojic, Nebojsa and Meek, Chris and Geiger, Dan and Siepel, Adam and Haussler, David and Heckerman, D.},
TITLE = {Efficient approximations for learning phylogenetic HMM models from data},
BOOKTITLE = {Proceedings of the 12th International Conference on Intelligent Systems for Molecular Biology/3rd European Conference on Computational Biology, ISMB'2004/ECCB'2004 (Glasgow, UK, July 31 - August 4, 2004)},
JOURNAL = {Bioinformatics},
VOLUME = {20},
NUMBER = {S1},
PAGES = {161-168},
YEAR = {2004},
URL = {http://bioinformatics.oxfordjournals.org/cgi/content/abstract/20/suppl_1/i161},
PUBLISHER = {Oxford University Press},
}
@article{Joslyn-Mniszewski-Fulmer-Heaton/04,
AUTHOR = {Joslyn, Cliff A. and Mniszewski, Susan M. and Fulmer, Andy and Heaton, Gary},
TITLE = {The Gene Ontology Categorizer},
BOOKTITLE = {Proceedings of the 12th International Conference on Intelligent Systems for Molecular Biology/3rd European Conference on Computational Biology, ISMB'2004/ECCB'2004 (Glasgow, UK, July 31 - August 4, 2004)},
JOURNAL = {Bioinformatics},
VOLUME = {20},
NUMBER = {S1},
PAGES = {169-177},
YEAR = {2004},
URL = {http://bioinformatics.oxfordjournals.org/cgi/content/abstract/20/suppl_1/i169},
PUBLISHER = {Oxford University Press},
}
@article{Kharchenko-Vitkup-Church/04,
AUTHOR = {Kharchenko, Peter and Vitkup, Dennis and Church, George M.},
TITLE = {Filling gaps in a metabolic network using expression information},
BOOKTITLE = {Proceedings of the 12th International Conference on Intelligent Systems for Molecular Biology/3rd European Conference on Computational Biology, ISMB'2004/ECCB'2004 (Glasgow, UK, July 31 - August 4, 2004)},
JOURNAL = {Bioinformatics},
VOLUME = {20},
NUMBER = {S1},
PAGES = {178-185},
YEAR = {2004},
URL = {http://bioinformatics.oxfordjournals.org/cgi/content/abstract/20/suppl_1/i178},
PUBLISHER = {Oxford University Press},
}
@article{Chapman-Bowers-Schulze-Paterson/04,
AUTHOR = {Chapman, Brad A. and Bowers, John E. and Schulze, Stefan R. and Paterson, Andrew H.},
TITLE = {A comparative phylogenetic approach for dating whole genome duplication events},
JOURNAL = {Bioinformatics},
VOLUME = {20},
NUMBER = {2},
PAGES = {180-185},
YEAR = {2004},
URL = {http://bioinformatics.oxfordjournals.org/cgi/content/abstract/20/2/180},
PUBLISHER = {Oxford University Press},
}
@article{Hofacker-Priwitzer-Stadler/04,
AUTHOR = {Hofacker, I.L. and Priwitzer, B. and Stadler, P.F.},
TITLE = {Prediction of locally stable RNA secondary structures for genome-wide surveys},
JOURNAL = {Bioinformatics},
VOLUME = {20},
NUMBER = {2},
PAGES = {186-190},
YEAR = {2004},
URL = {http://bioinformatics.oxfordjournals.org/cgi/content/abstract/20/2/186},
PUBLISHER = {Oxford University Press},
}
@article{Klau-Rahmann-Schliep-Vingron-Reinert/04,
AUTHOR = {Klau, Gunnar W. and Rahmann, Sven and Schliep, Alexander and Vingron, Martin and Reinert, Knut},
TITLE = {Optimal robust non-unique probe selection using Integer Linear Programming},
BOOKTITLE = {Proceedings of the 12th International Conference on Intelligent Systems for Molecular Biology/3rd European Conference on Computational Biology, ISMB'2004/ECCB'2004 (Glasgow, UK, July 31 - August 4, 2004)},
JOURNAL = {Bioinformatics},
VOLUME = {20},
NUMBER = {S1},
PAGES = {186-193},
YEAR = {2004},
URL = {http://bioinformatics.oxfordjournals.org/cgi/content/abstract/20/suppl_1/i186},
PUBLISHER = {Oxford University Press},
}
@article{Kostka-Spang/04,
AUTHOR = {Kostka, Dennis and Spang, Rainer},
TITLE = {Finding disease specific alterations in the co-expression of genes},
BOOKTITLE = {Proceedings of the 12th International Conference on Intelligent Systems for Molecular Biology/3rd European Conference on Computational Biology, ISMB'2004/ECCB'2004 (Glasgow, UK, July 31 - August 4, 2004)},
JOURNAL = {Bioinformatics},
VOLUME = {20},
NUMBER = {S1},
PAGES = {194-199},
YEAR = {2004},
URL = {http://bioinformatics.oxfordjournals.org/cgi/content/abstract/20/suppl_1/i194},
PUBLISHER = {Oxford University Press},
}
@article{Brylinski-Jurkowski-Konieczny-Roterman/04,
AUTHOR = {Bryli{\'n}ski, M. and Jurkowski, W. and Konieczny, L. and Roterman, I.},
TITLE = {Limited conformational space for early-stage protein folding simulation},
JOURNAL = {Bioinformatics},
VOLUME = {20},
NUMBER = {2},
PAGES = {199-205},
YEAR = {2004},
URL = {http://bioinformatics.oxfordjournals.org/cgi/content/abstract/20/2/199},
PUBLISHER = {Oxford University Press},
}
@article{Koyuturk-Grama-Szpankowski/04,
AUTHOR = {Koyut{\"{u}}rk, Mehmet and Grama, Ananth and Szpankowski, Wojciech},
TITLE = {An efficient algorithm for detecting frequent subgraphs in biological networks},
BOOKTITLE = {Proceedings of the 12th International Conference on Intelligent Systems for Molecular Biology/3rd European Conference on Computational Biology, ISMB'2004/ECCB'2004 (Glasgow, UK, July 31 - August 4, 2004)},
JOURNAL = {Bioinformatics},
VOLUME = {20},
NUMBER = {S1},
PAGES = {200-207},
YEAR = {2004},
URL = {http://bioinformatics.oxfordjournals.org/cgi/content/abstract/20/suppl_1/i200},
PUBLISHER = {Oxford University Press},
}
@article{Chang-Schutze-Altman/04,
AUTHOR = {Chang, Jeffrey T. and Sch{\"u}tze, Hinrich and Altman, Russ B.},
TITLE = {GAPSCORE: Finding gene and protein names one word at a time},
JOURNAL = {Bioinformatics},
VOLUME = {20},
NUMBER = {2},
PAGES = {216-225},
YEAR = {2004},
URL = {http://bioinformatics.oxfordjournals.org/cgi/content/abstract/20/2/216},
PUBLISHER = {Oxford University Press},
}
@article{Klamt-Gilles/04,
AUTHOR = {Klamt, Steffen and Gilles, Ernst Dieter},
TITLE = {Minimal cut sets in biochemical reaction networks},
JOURNAL = {Bioinformatics},
VOLUME = {20},
NUMBER = {2},
PAGES = {226-234},
YEAR = {2004},
URL = {http://bioinformatics.oxfordjournals.org/cgi/content/abstract/20/2/226},
PUBLISHER = {Oxford University Press},
}
@article{Datta-Satten-Benos-Xia-Heslin-Datta/04,
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TITLE = {An empirical Bayes adjustment to increase the sensitivity of detecting differentially expressed genes in microarray experiments},
JOURNAL = {Bioinformatics},
VOLUME = {20},
NUMBER = {2},
PAGES = {235-242},
YEAR = {2004},
URL = {http://bioinformatics.oxfordjournals.org/cgi/content/abstract/20/2/235},
PUBLISHER = {Oxford University Press},
}
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AUTHOR = {Kawaji, Hideya and Takenaka, Yoichi and Matsuda, Hideo},
TITLE = {Graph-based clustering for finding distant relationships in a large set of protein sequences},
JOURNAL = {Bioinformatics},
VOLUME = {20},
NUMBER = {2},
PAGES = {243-252},
YEAR = {2004},
URL = {http://bioinformatics.oxfordjournals.org/cgi/content/abstract/20/2/243},
PUBLISHER = {Oxford University Press},
}
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TITLE = {Is cross-validation better than resubstitution for ranking genes?},
JOURNAL = {Bioinformatics},
VOLUME = {20},
NUMBER = {2},
PAGES = {253-258},
YEAR = {2004},
URL = {http://bioinformatics.oxfordjournals.org/cgi/content/abstract/20/2/253},
PUBLISHER = {Oxford University Press},
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AUTHOR = {Burger, Albert and Davidson, Duncan and Baldock, Richard},
TITLE = {Formalization of mouse embryo anatomy},
JOURNAL = {Bioinformatics},
VOLUME = {20},
NUMBER = {2},
PAGES = {259-267},
YEAR = {2004},
URL = {http://bioinformatics.oxfordjournals.org/cgi/content/abstract/20/2/259},
PUBLISHER = {Oxford University Press},
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TITLE = {The Helmholtz Network for Bioinformatics: An integrative web portal for bioinformatics resources},
JOURNAL = {Bioinformatics},
VOLUME = {20},
NUMBER = {2},
PAGES = {268-270},
YEAR = {2004},
URL = {http://bioinformatics.oxfordjournals.org/cgi/content/abstract/20/2/268},
PUBLISHER = {Oxford University Press},
}
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AUTHOR = {Barker, D.},
TITLE = {LVB: Parsimony and simulated annealing in the search for phylogenetic trees},
JOURNAL = {Bioinformatics},
VOLUME = {20},
NUMBER = {2},
PAGES = {274-275},
YEAR = {2004},
URL = {http://bioinformatics.oxfordjournals.org/cgi/content/abstract/20/2/274},
PUBLISHER = {Oxford University Press},
}
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AUTHOR = {Huang, Shir-Ly and Wu, Li-Cheng and Liang, Han-Kuen and Pan, Kuan-Ting and Horng, Jorng-Tzong and Ko, Ming-Tat},
TITLE = {PGTdb: A database providing growth temperatures of prokaryotes},
JOURNAL = {Bioinformatics},
VOLUME = {20},
NUMBER = {2},
PAGES = {276-278},
YEAR = {2004},
URL = {http://bioinformatics.oxfordjournals.org/cgi/content/abstract/20/2/276},
PUBLISHER = {Oxford University Press},
}
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AUTHOR = {Brodie, Ryan and Roper, Rachel L. and Upton, Chris},
TITLE = {JDotter: A Java interface to multiple dotplots generated by Dotter},
JOURNAL = {Bioinformatics},
VOLUME = {20},
NUMBER = {2},
PAGES = {279-281},
YEAR = {2004},
URL = {http://bioinformatics.oxfordjournals.org/cgi/content/abstract/20/2/279},
PUBLISHER = {Oxford University Press},
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TITLE = {FGDP: Functional genomics data pipeline for automated, multiple microarray data analyses},
JOURNAL = {Bioinformatics},
VOLUME = {20},
NUMBER = {2},
PAGES = {282-283},
YEAR = {2004},
URL = {http://bioinformatics.oxfordjournals.org/cgi/content/abstract/20/2/282},
PUBLISHER = {Oxford University Press},
}
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AUTHOR = {Hvidsten, Torgeir R. and Kryshtafovych, Andriy and Komorowski, Jan and Fidelis, Krzysztof},
TITLE = {Erratum to ''A novel approach to fold recognition using sequence-derived properties from sets of structurally similar local fragments of proteins''},
JOURNAL = {Bioinformatics},
VOLUME = {20},
NUMBER = {2},
PAGES = {293-293},
YEAR = {2004},
URL = {http://bioinformatics.oxfordjournals.org/cgi/content/abstract/20/2/293},
PUBLISHER = {Oxford University Press},
NOTE = {Originally in Proceedings of the 3rd European Conference on Computational Biology, ECCB'2003, 2003, 81-91},
}
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AUTHOR = {Gautier, Laurent and Cope, Leslie and Bolstad, Benjamin M. and Irizarry, Rafael A.},
TITLE = {affy --- Analysis of Affymetrix GeneChip data at the probe level},
JOURNAL = {Bioinformatics},
VOLUME = {20},
NUMBER = {3},
PAGES = {307-315},
YEAR = {2004},
URL = {http://bioinformatics.oxfordjournals.org/cgi/content/abstract/20/3/307},
PUBLISHER = {Oxford University Press},
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AUTHOR = {Kiehl, Thomas R. and Mattheyses, Robert M. and Simmons, Melvin K.},
TITLE = {Hybrid simulation of cellular behavior},
JOURNAL = {Bioinformatics},
VOLUME = {20},
NUMBER = {3},
PAGES = {316-322},
YEAR = {2004},
URL = {http://bioinformatics.oxfordjournals.org/cgi/content/abstract/20/3/316},
PUBLISHER = {Oxford University Press},
}
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TITLE = {A benchmark for Affymetrix GeneChip expression measures},
JOURNAL = {Bioinformatics},
VOLUME = {20},
NUMBER = {3},
PAGES = {323-331},
YEAR = {2004},
URL = {http://bioinformatics.oxfordjournals.org/cgi/content/abstract/20/3/323},
PUBLISHER = {Oxford University Press},
}
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TITLE = {An ontology for collaborative construction and analysis of cellular pathways},
JOURNAL = {Bioinformatics},
VOLUME = {20},
NUMBER = {3},
PAGES = {349-356},
YEAR = {2004},
URL = {http://bioinformatics.oxfordjournals.org/cgi/content/abstract/20/3/349},
PUBLISHER = {Oxford University Press},
}
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TITLE = {Advanced significance analysis of microarray data based on weighted resampling: A comparative study and application to gene deletions in Mycobacterium bovis},
JOURNAL = {Bioinformatics},
VOLUME = {20},
NUMBER = {3},
PAGES = {357-363},
YEAR = {2004},
URL = {http://bioinformatics.oxfordjournals.org/cgi/content/abstract/20/3/357},
PUBLISHER = {Oxford University Press},
}
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AUTHOR = {Kowalski, Jeanne and Drake, Charles and Schwartz, Ronald H. and Powell, Jonathan},
TITLE = {Non-parametric, hypothesis-based analysis of microarrays for comparison of several phenotypes},
JOURNAL = {Bioinformatics},
VOLUME = {20},
NUMBER = {3},
PAGES = {364-373},
YEAR = {2004},
URL = {http://bioinformatics.oxfordjournals.org/cgi/content/abstract/20/3/364},
PUBLISHER = {Oxford University Press},
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AUTHOR = {Braga-Neto, Ulisses M. and Dougherty, Edward R.},
TITLE = {Is cross-validation valid for small-sample microarray classification?},
JOURNAL = {Bioinformatics},
VOLUME = {20},
NUMBER = {3},
PAGES = {374-380},
YEAR = {2004},
URL = {http://bioinformatics.oxfordjournals.org/cgi/content/abstract/20/3/374},
PUBLISHER = {Oxford University Press},
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TITLE = {Parallel Metropolis coupled Markov chain Monte Carlo for Bayesian phylogenetic inference},
JOURNAL = {Bioinformatics},
VOLUME = {20},
NUMBER = {3},
PAGES = {407-415},
YEAR = {2004},
URL = {http://bioinformatics.oxfordjournals.org/cgi/content/abstract/20/3/407},
PUBLISHER = {Oxford University Press},
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AUTHOR = {Bhasin, Manoj and Raghava, G.P.S.},
TITLE = {SVM based method for predicting HLA-DRB1*0401 binding peptides in an antigen sequence},
JOURNAL = {Bioinformatics},
VOLUME = {20},
NUMBER = {3},
PAGES = {421-423},
YEAR = {2004},
URL = {http://bioinformatics.oxfordjournals.org/cgi/content/abstract/20/3/421},
PUBLISHER = {Oxford University Press},
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AUTHOR = {Clamp, Michele and Cuff, James and Searle, Stephen M. and Barton, Geoffrey J.},
TITLE = {The Jalview Java alignment editor},
JOURNAL = {Bioinformatics},
VOLUME = {20},
NUMBER = {3},
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YEAR = {2004},
URL = {http://bioinformatics.oxfordjournals.org/cgi/content/abstract/20/3/426},
PUBLISHER = {Oxford University Press},
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TITLE = {SEPON, a Selection and Evaluation Pipeline for OligoNucleotides based on ESTs with a non-target T$_m$ algorithm for reducing cross-hybridization in microarray gene expression experiments},
JOURNAL = {Bioinformatics},
VOLUME = {20},
NUMBER = {3},
PAGES = {428-429},
YEAR = {2004},
URL = {http://bioinformatics.oxfordjournals.org/cgi/content/abstract/20/3/428},
PUBLISHER = {Oxford University Press},
}
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AUTHOR = {Kochetov, Alex V. and Sarai, Akinori},
TITLE = {Translational polymorphism as a potential source of plant proteins variety in Arabidopsis thaliana},
JOURNAL = {Bioinformatics},
VOLUME = {20},
NUMBER = {4},
PAGES = {445-447},
YEAR = {2004},
URL = {http://bioinformatics.oxfordjournals.org/cgi/content/abstract/20/4/445},
PUBLISHER = {Oxford University Press},
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AUTHOR = {G{\'a}sp{\'a}ri, Zolt{\'a}n and Ortutay, Csaba and Perczel, Andr{\'a}s},
TITLE = {A simple fold with variations: The pacifastin inhibitor family},
JOURNAL = {Bioinformatics},
VOLUME = {20},
NUMBER = {4},
PAGES = {448-451},
YEAR = {2004},
URL = {http://bioinformatics.oxfordjournals.org/cgi/content/abstract/20/4/448},
PUBLISHER = {Oxford University Press},
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AUTHOR = {Huang, Yue and Zhang, Ling},
TITLE = {Rapid and sensitive dot-matrix methods for genome analysis},
JOURNAL = {Bioinformatics},
VOLUME = {20},
NUMBER = {4},
PAGES = {460-466},
YEAR = {2004},
URL = {http://bioinformatics.oxfordjournals.org/cgi/content/abstract/20/4/460},
PUBLISHER = {Oxford University Press},
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TITLE = {Analysis and prediction of DNA-binding proteins and their binding residues based on composition, sequence and structural information},
JOURNAL = {Bioinformatics},
VOLUME = {20},
NUMBER = {4},
PAGES = {477-486},
YEAR = {2004},
URL = {http://bioinformatics.oxfordjournals.org/cgi/content/abstract/20/4/477},
PUBLISHER = {Oxford University Press},
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TITLE = {Inverse modeling using multi-block PLS to determine the environmental conditions that provide optimal cellular function},
JOURNAL = {Bioinformatics},
VOLUME = {20},
NUMBER = {4},
PAGES = {487-499},
YEAR = {2004},
URL = {http://bioinformatics.oxfordjournals.org/cgi/content/abstract/20/4/487},
PUBLISHER = {Oxford University Press},
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TITLE = {Comparison of Li-Wong and loglinear mixed models for the statistical analysis of oligonucleotide arrays},
JOURNAL = {Bioinformatics},
VOLUME = {20},
NUMBER = {4},
PAGES = {500-506},
YEAR = {2004},
URL = {http://bioinformatics.oxfordjournals.org/cgi/content/abstract/20/4/500},
PUBLISHER = {Oxford University Press},
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TITLE = {Tailored gene array databases: Applications in mechanistic toxicology},
JOURNAL = {Bioinformatics},
VOLUME = {20},
NUMBER = {4},
PAGES = {507-517},
YEAR = {2004},
URL = {http://bioinformatics.oxfordjournals.org/cgi/content/abstract/20/4/507},
PUBLISHER = {Oxford University Press},
}
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AUTHOR = {Adar, Eytan},
TITLE = {SaRAD: A Simple and Robust Abbreviation Dictionary},
JOURNAL = {Bioinformatics},
VOLUME = {20},
NUMBER = {4},
PAGES = {527-533},
YEAR = {2004},
URL = {http://bioinformatics.oxfordjournals.org/cgi/content/abstract/20/4/527},
PUBLISHER = {Oxford University Press},
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TITLE = {Fundamentals of massive automatic pairwise alignments of protein sequences: Theoretical significance of $Z$-value statistics},
JOURNAL = {Bioinformatics},
VOLUME = {20},
NUMBER = {4},
PAGES = {534-537},
YEAR = {2004},
URL = {http://bioinformatics.oxfordjournals.org/cgi/content/abstract/20/4/534},
PUBLISHER = {Oxford University Press},
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TITLE = {Automated extraction of mutation data from the literature: Application of MuteXt to G protein-coupled receptors and nuclear hormone receptors},
JOURNAL = {Bioinformatics},
VOLUME = {20},
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PAGES = {557-568},
YEAR = {2004},
URL = {http://bioinformatics.oxfordjournals.org/cgi/content/abstract/20/4/557},
PUBLISHER = {Oxford University Press},
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TITLE = {ChromoWheel: A new spin on eukaryotic chromosome visualization},
JOURNAL = {Bioinformatics},
VOLUME = {20},
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YEAR = {2004},
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PUBLISHER = {Oxford University Press},
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TITLE = {FatiGO: A web tool for finding significant associations of Gene Ontology terms with groups of genes},
JOURNAL = {Bioinformatics},
VOLUME = {20},
NUMBER = {4},
PAGES = {578-580},
YEAR = {2004},
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PUBLISHER = {Oxford University Press},
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TITLE = {Extracting human protein interactions from MEDLINE using a full-sentence parser},
JOURNAL = {Bioinformatics},
VOLUME = {20},
NUMBER = {5},
PAGES = {604-611},
YEAR = {2004},
URL = {http://bioinformatics.oxfordjournals.org/cgi/content/abstract/20/5/604},
PUBLISHER = {Oxford University Press},
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PAGES = {623-628},
YEAR = {2004},
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PUBLISHER = {Oxford University Press},
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TITLE = {Optimization models for cancer classification: Extracting gene interaction information from microarray expression data},
JOURNAL = {Bioinformatics},
VOLUME = {20},
NUMBER = {5},
PAGES = {644-652},
YEAR = {2004},
URL = {http://bioinformatics.oxfordjournals.org/cgi/content/abstract/20/5/644},
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TITLE = {Variance-stabilizing transformations for two-color microarrays},
JOURNAL = {Bioinformatics},
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NUMBER = {5},
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YEAR = {2004},
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PUBLISHER = {Oxford University Press},
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TITLE = {Comparison of various algorithms for recognizing short coding sequences of human genes},
JOURNAL = {Bioinformatics},
VOLUME = {20},
NUMBER = {5},
PAGES = {673-681},
YEAR = {2004},
URL = {http://bioinformatics.oxfordjournals.org/cgi/content/abstract/20/5/673},
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VOLUME = {20},
NUMBER = {5},
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YEAR = {2004},
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YEAR = {2004},
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TITLE = {Genotyping of single nucleotide polymorphism using model-based clustering},
JOURNAL = {Bioinformatics},
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YEAR = {2004},
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YEAR = {2004},
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PUBLISHER = {Oxford University Press},
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YEAR = {2004},
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PUBLISHER = {Oxford University Press},
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TITLE = {CAAT-Box, contigs-Assembly and Annotation Tool-Box for genome sequencing projects},
JOURNAL = {Bioinformatics},
VOLUME = {20},
NUMBER = {5},
PAGES = {790-797},
YEAR = {2004},
URL = {http://bioinformatics.oxfordjournals.org/cgi/content/abstract/20/5/790},
PUBLISHER = {Oxford University Press},
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TITLE = {In silico analysis of complete bacterial genomes: PCR, AFLP-PCR and endonuclease restriction},
JOURNAL = {Bioinformatics},
VOLUME = {20},
NUMBER = {5},
PAGES = {798-799},
YEAR = {2004},
URL = {http://bioinformatics.oxfordjournals.org/cgi/content/abstract/20/5/798},
PUBLISHER = {Oxford University Press},
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AUTHOR = {Cavalcanti, Andre R.O. and Landweber, Laura F.},
TITLE = {Gene Unscrambler for detangling scrambled genes in ciliates},
JOURNAL = {Bioinformatics},
VOLUME = {20},
NUMBER = {5},
PAGES = {800-802},
YEAR = {2004},
URL = {http://bioinformatics.oxfordjournals.org/cgi/content/abstract/20/5/800},
PUBLISHER = {Oxford University Press},
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TITLE = {Alu repeat analysis in the complete human genome: Trends and variations with respect to genomic composition},
JOURNAL = {Bioinformatics},
VOLUME = {20},
NUMBER = {6},
PAGES = {813-817},
YEAR = {2004},
URL = {http://bioinformatics.oxfordjournals.org/cgi/content/abstract/20/6/813},
PUBLISHER = {Oxford University Press},
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AUTHOR = {Kantardjieff, Katherine A. and Rupp, Bernhard},
TITLE = {Protein isoelectric point as a predictor for increased crystallization screening efficiency},
JOURNAL = {Bioinformatics},
VOLUME = {20},
NUMBER = {14},
PAGES = {2162-2168},
YEAR = {2004},
URL = {http://bioinformatics.oxfordjournals.org/cgi/content/abstract/20/14/2162},
PUBLISHER = {Oxford University Press},
}
@article{Huber-Kobe/04,
AUTHOR = {Huber, Thomas and Kobe, Bostjan},
TITLE = {Comment on ''Protein isoelectric point as a predictor for increased crystallization screening efficiency''},
JOURNAL = {Bioinformatics},
VOLUME = {20},
NUMBER = {14},
PAGES = {2169-2170},
YEAR = {2004},
URL = {http://bioinformatics.oxfordjournals.org/cgi/content/abstract/20/14/2169},
PUBLISHER = {Oxford University Press},
}
@article{Kantardjieff-Jamshidian-Rupp/04,
AUTHOR = {Kantardjieff, Katherine A. and Jamshidian, Mortaza and Rupp, Bernhard},
TITLE = {Distributions of pI versus pH provide prior information for the design of crystallization screening experiments: Response to comment on ''Protein isoelectric point as a predictor for increased crystallization screening efficiency''},
JOURNAL = {Bioinformatics},
VOLUME = {20},
NUMBER = {14},
PAGES = {2171-2174},
YEAR = {2004},
URL = {http://bioinformatics.oxfordjournals.org/cgi/content/abstract/20/14/2171},
PUBLISHER = {Oxford University Press},
}
@article{Endo/04,
AUTHOR = {Endo, Takaho A.},
TITLE = {Probabilistic nucleotide assembling method for sequencing by hybridization},
JOURNAL = {Bioinformatics},
VOLUME = {20},
NUMBER = {14},
PAGES = {2181-2188},
YEAR = {2004},
URL = {http://bioinformatics.oxfordjournals.org/cgi/content/abstract/20/14/2181},
PUBLISHER = {Oxford University Press},
}
@article{Koum-Yekel-Ndifon-Simard/04,
AUTHOR = {Koum, Guillaume and Yekel, Augustin and Ndifon, Bengyella and Simard, Fr{\'{e}}d{\'{e}}ric},
TITLE = {Design and implementation of a mosquito database through an entomological ontology},
JOURNAL = {Bioinformatics},
VOLUME = {20},
NUMBER = {14},
PAGES = {2205-2211},
YEAR = {2004},
URL = {http://bioinformatics.oxfordjournals.org/cgi/content/abstract/20/14/2205},
PUBLISHER = {Oxford University Press},
NOTE = {see Erratum in Bioinformatics, Vol. 21, 2005, No. 11, 2797-2802},
}
@article{Hofacker-Bernhart-Stadler/04,
AUTHOR = {Hofacker, Ivo L. and Bernhart, Stephan H.F. and Stadler, Peter F.},
TITLE = {Alignment of RNA base pairing probability matrices},
JOURNAL = {Bioinformatics},
VOLUME = {20},
NUMBER = {14},
PAGES = {2222-2227},
YEAR = {2004},
URL = {http://bioinformatics.oxfordjournals.org/cgi/content/abstract/20/14/2222},
PUBLISHER = {Oxford University Press},
}
@article{Carter-Brechbuhler-Griffin-Bond/04,
AUTHOR = {Carter, Scott L. and Brechb{\"{u}}hler, Christian M. and Griffin, Michael and Bond, Andrew T.},
TITLE = {Gene co-expression network topology provides a framework for molecular characterization of cellular state},
JOURNAL = {Bioinformatics},
VOLUME = {20},
NUMBER = {14},
PAGES = {2242-2250},
YEAR = {2004},
URL = {http://bioinformatics.oxfordjournals.org/cgi/content/abstract/20/14/2242},
PUBLISHER = {Oxford University Press},
}
@article{Brooks-Fresco-Singh/04,
AUTHOR = {Brooks, D.J. and Fresco, J.R. and Singh, M.},
TITLE = {A novel method for estimating ancestral amino acid composition and its application to proteins of the Last Universal Ancestor},
JOURNAL = {Bioinformatics},
VOLUME = {20},
NUMBER = {14},
PAGES = {2251-2257},
YEAR = {2004},
URL = {http://bioinformatics.oxfordjournals.org/cgi/content/abstract/20/14/2251},
PUBLISHER = {Oxford University Press},
}
@article{Ekstrom-Bak-Kristensen-Rudemo/04,
AUTHOR = {Ekstr{\o}m, Claus Thorn and Bak, S{\o}ren and Kristensen, Charlotte and Rudemo, Mats},
TITLE = {Spot shape modelling and data transformations for microarrays},
JOURNAL = {Bioinformatics},
VOLUME = {20},
NUMBER = {14},
PAGES = {2270-2278},
YEAR = {2004},
URL = {http://bioinformatics.oxfordjournals.org/cgi/content/abstract/20/14/2270},
PUBLISHER = {Oxford University Press},
}
@article{Bray-Marsden-Rison-Savchenko-Edwards-Thornton-Orengo/04,
AUTHOR = {Bray, James E. and Marsden, Russell L. and Rison, Stuart C.G. and Savchenko, Alexei and Edwards, Aled M. and Thornton, Janet M. and Orengo, Christine A.},
TITLE = {A practical and robust sequence search strategy for structural genomics target selection},
JOURNAL = {Bioinformatics},
VOLUME = {20},
NUMBER = {14},
PAGES = {2288-2295},
YEAR = {2004},
URL = {http://bioinformatics.oxfordjournals.org/cgi/content/abstract/20/14/2288},
PUBLISHER = {Oxford University Press},
}
@article{Heredia-Langner-Cannon-Jarman-Jarman/04,
AUTHOR = {Heredia-Langner, Alejandro and Cannon, William R. and Jarman, Kenneth D. and Jarman, Kristin H.},
TITLE = {Sequence optimization as an alternative to de novo analysis of tandem mass spectrometry data},
JOURNAL = {Bioinformatics},
VOLUME = {20},
NUMBER = {14},
PAGES = {2296-2304},
YEAR = {2004},
URL = {http://bioinformatics.oxfordjournals.org/cgi/content/abstract/20/14/2296},
PUBLISHER = {Oxford University Press},
}
@article{Ciria-Abreu-Goodger-Morett-Merino/04,
AUTHOR = {Ciria, R. and Abreu-Goodger, C. and Morett, E. and Merino, E.},
TITLE = {GeConT: Gene context analysis},
JOURNAL = {Bioinformatics},
VOLUME = {20},
NUMBER = {14},
PAGES = {2307-2308},
YEAR = {2004},
URL = {http://bioinformatics.oxfordjournals.org/cgi/content/abstract/20/14/2307},
PUBLISHER = {Oxford University Press},
}
@article{Dolinsky-Burgers-Karplus-Baker/04,
AUTHOR = {Dolinsky, T.J. and Burgers, P.M.J. and Karplus, K. and Baker, N.A.},
TITLE = {SPrCY: Comparison of structural predictions in the Saccharomyces cerevisiae genome},
JOURNAL = {Bioinformatics},
VOLUME = {20},
NUMBER = {14},
PAGES = {2312-2314},
YEAR = {2004},
URL = {http://bioinformatics.oxfordjournals.org/cgi/content/abstract/20/14/2312},
PUBLISHER = {Oxford University Press},
}
@article{Huber-Faulkner-Hugenholtz/04,
AUTHOR = {Huber, Thomas and Faulkner, Geoffrey and Hugenholtz, Philip},
TITLE = {Bellerophon: A program to detect chimeric sequences in multiple sequence alignments},
JOURNAL = {Bioinformatics},
VOLUME = {20},
NUMBER = {14},
PAGES = {2317-2319},
YEAR = {2004},
URL = {http://bioinformatics.oxfordjournals.org/cgi/content/abstract/20/14/2317},
PUBLISHER = {Oxford University Press},
}
@article{Arcade-Labourdette-Falque-Mangin-Chardon-Charcosset-Joets/04,
AUTHOR = {Arcade, Anne and Labourdette, Aymeric and Falque, Matthieu and Mangin, Brigitte and Chardon, Fabien and Charcosset, Alain and Joets, Johann},
TITLE = {BioMercator: Integrating genetic maps and QTL towards discovery of candidate genes},
JOURNAL = {Bioinformatics},
VOLUME = {20},
NUMBER = {14},
PAGES = {2324-2326},
YEAR = {2004},
URL = {http://bioinformatics.oxfordjournals.org/cgi/content/abstract/20/14/2324},
PUBLISHER = {Oxford University Press},
}
@article{Dudbridge-Carver-Williams/04,
AUTHOR = {Dudbridge, Frank and Carver, Tim and Williams, Gary W.},
TITLE = {Pelican: Pedigree editor for linkage computer analysis},
JOURNAL = {Bioinformatics},
VOLUME = {20},
NUMBER = {14},
PAGES = {2327-2328},
YEAR = {2004},
URL = {http://bioinformatics.oxfordjournals.org/cgi/content/abstract/20/14/2327},
PUBLISHER = {Oxford University Press},
}
@article{Iragne-Barre-Goffard-de_Daruvar/04,
AUTHOR = {Iragne, Florian and Barr{\'{e}}, Aur{\'{e}}lien and Goffard, Nicolas and de Daruvar, Antoine},
TITLE = {AliasServer: A web server to handle multiple aliases used to refer to proteins},
JOURNAL = {Bioinformatics},
VOLUME = {20},
NUMBER = {14},
PAGES = {2331-2332},
YEAR = {2004},
URL = {http://bioinformatics.oxfordjournals.org/cgi/content/abstract/20/14/2331},
PUBLISHER = {Oxford University Press},
}
@article{Dima-Thirumalai/04,
AUTHOR = {Dima, Ruxandra I. and Thirumalai, D.},
TITLE = {Proteins associated with diseases show enhanced sequence correlation between charged residues},
JOURNAL = {Bioinformatics},
VOLUME = {20},
NUMBER = {15},
PAGES = {2345-2354},
YEAR = {2004},
URL = {http://bioinformatics.oxfordjournals.org/cgi/content/abstract/20/15/2345},
PUBLISHER = {Oxford University Press},
}
@article{Corander-Waldmann-Marttinen-Sillanpaa/04,
AUTHOR = {Corander, Jukka and Waldmann, Patrik and Marttinen, Pekka and Sillanp{\"{a}}{\"{a}}, Mikko J.},
TITLE = {BAPS 2: Enhanced possibilities for the analysis of genetic population structure},
JOURNAL = {Bioinformatics},
VOLUME = {20},
NUMBER = {15},
PAGES = {2363-2369},
YEAR = {2004},
URL = {http://bioinformatics.oxfordjournals.org/cgi/content/abstract/20/15/2363},
PUBLISHER = {Oxford University Press},
}
@article{Boutros-Okey/04,
AUTHOR = {Boutros, Paul C. and Okey, Allan B.},
TITLE = {PUNS: Transcriptomic- and genomic-in silico PCR for enhanced primer design},
JOURNAL = {Bioinformatics},
VOLUME = {20},
NUMBER = {15},
PAGES = {2399-2400},
YEAR = {2004},
URL = {http://bioinformatics.oxfordjournals.org/cgi/content/abstract/20/15/2399},
PUBLISHER = {Oxford University Press},
}
@article{Keith-Adams-Bryant-Cochran-Lala-Mitchelson/04,
AUTHOR = {Keith, Jonathan M. and Adams, Peter and Bryant, Darryn and Cochran, Duncan A.E. and Lala, Gita H. and Mitchelson, Keith R.},
TITLE = {Algorithms for sequence analysis via mutagenesis},
JOURNAL = {Bioinformatics},
VOLUME = {20},
NUMBER = {15},
PAGES = {2401-2410},
YEAR = {2004},
URL = {http://bioinformatics.oxfordjournals.org/cgi/content/abstract/20/15/2401},
PUBLISHER = {Oxford University Press},
}
@article{Kukkonen/04,
AUTHOR = {Kukkonen, Jyrki P.},
TITLE = {Explicit formulation of different receptor-G-protein interactions and effector regulation},
JOURNAL = {Bioinformatics},
VOLUME = {20},
NUMBER = {15},
PAGES = {2411-2420},
YEAR = {2004},
URL = {http://bioinformatics.oxfordjournals.org/cgi/content/abstract/20/15/2411},
PUBLISHER = {Oxford University Press},
}
@article{Fofanov-Luo-Katili-Wang-Belosludtsev-Powdrill-Belapurkar-Fofanov-Li-Chumakov-Pettitt/04,
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TITLE = {How independent are the appearances of n-mers in different genomes?},
JOURNAL = {Bioinformatics},
VOLUME = {20},
NUMBER = {15},
PAGES = {2421-2428},
YEAR = {2004},
URL = {http://bioinformatics.oxfordjournals.org/cgi/content/abstract/20/15/2421},
PUBLISHER = {Oxford University Press},
}
@article{Jansen-Hoefsloot-Boelens-van_der_Greef-Smilde/04,
AUTHOR = {Jansen, Jeroen J. and Hoefsloot, Huub C.J. and Boelens, Hans F.M. and van der Greef, Jan and Smilde, Age K.},
TITLE = {Analysis of longitudinal metabolomics data},
JOURNAL = {Bioinformatics},
VOLUME = {20},
NUMBER = {15},
PAGES = {2438-2446},
YEAR = {2004},
URL = {http://bioinformatics.oxfordjournals.org/cgi/content/abstract/20/15/2438},
PUBLISHER = {Oxford University Press},
}
@article{Fernandez-Valencia/04,
AUTHOR = {Fern{\'{a}}ndez, Jos{\'{e}} M. and Valencia, Alfonso},
TITLE = {YAdumper: Extracting and translating large information volumes from relational databases to structured flat files},
JOURNAL = {Bioinformatics},
VOLUME = {20},
NUMBER = {15},
PAGES = {2455-2457},
YEAR = {2004},
URL = {http://bioinformatics.oxfordjournals.org/cgi/content/abstract/20/15/2455},
PUBLISHER = {Oxford University Press},
}
@article{Garwood-Taylor-Runte-Brass-Oliver-Paton/04,
AUTHOR = {Garwood, Kevin L. and Taylor, Chris F. and Runte, Kai J. and Brass, Andy and Oliver, Stephen G. and Paton, Norman W.},
TITLE = {Pedro: A configurable data entry tool for XML},
JOURNAL = {Bioinformatics},
VOLUME = {20},
NUMBER = {15},
PAGES = {2463-2465},
YEAR = {2004},
URL = {http://bioinformatics.oxfordjournals.org/cgi/content/abstract/20/15/2463},
PUBLISHER = {Oxford University Press},
}
@article{Han-Park-Kim-Hong-Park/04,
AUTHOR = {Han, Kyungsook and Park, Byungkyu and Kim, Hyongguen and Hong, Jinsun and Park, Jong},
TITLE = {HPID: The Human Protein Interaction Database},
JOURNAL = {Bioinformatics},
VOLUME = {20},
NUMBER = {15},
PAGES = {2466-2470},
YEAR = {2004},
URL = {http://bioinformatics.oxfordjournals.org/cgi/content/abstract/20/15/2466},
PUBLISHER = {Oxford University Press},
}
@article{Frank-Hall-Trigg-Holmes-Witten/04,
AUTHOR = {Frank, Eibe and Hall, Mark and Trigg, Len and Holmes, Geoffrey and Witten, Ian H.},
TITLE = {Data mining in bioinformatics using Weka},
JOURNAL = {Bioinformatics},
VOLUME = {20},
NUMBER = {15},
PAGES = {2479-2481},
YEAR = {2004},
URL = {http://bioinformatics.oxfordjournals.org/cgi/content/abstract/20/15/2479},
PUBLISHER = {Oxford University Press},
}
@article{Fischer-Pas-Rychlewski/04,
AUTHOR = {Fischer, Daniel and Pa{\'s}, Jakub and Rychlewski, Leszek},
TITLE = {The PDB-Preview database: A repository of in-silico models of ''on-hold'' PDB entries},
JOURNAL = {Bioinformatics},
VOLUME = {20},
NUMBER = {15},
PAGES = {2482-2484},
YEAR = {2004},
URL = {http://bioinformatics.oxfordjournals.org/cgi/content/abstract/20/15/2482},
PUBLISHER = {Oxford University Press},
}
@article{Chalk-Wennerberg-Sonnhammer/04,
AUTHOR = {Chalk, Alistair M. and Wennerberg, Martin and Sonnhammer, Erik L.L.},
TITLE = {Sfixem --- Graphical sequence feature display in Java},
JOURNAL = {Bioinformatics},
VOLUME = {20},
NUMBER = {15},
PAGES = {2488-2490},
YEAR = {2004},
URL = {http://bioinformatics.oxfordjournals.org/cgi/content/abstract/20/15/2488},
PUBLISHER = {Oxford University Press},
}
@article{Bar-Joseph/04,
AUTHOR = {Bar-Joseph, Ziv},
TITLE = {Analyzing time series gene expression data},
JOURNAL = {Bioinformatics},
VOLUME = {20},
NUMBER = {16},
PAGES = {2493-2503},
YEAR = {2004},
URL = {http://bioinformatics.oxfordjournals.org/cgi/content/abstract/20/16/2493},
PUBLISHER = {Oxford University Press},
}
@article{Kinjo-Nishikawa/04,
AUTHOR = {Kinjo, Akira R. and Nishikawa, Ken},
TITLE = {Eigenvalue analysis of amino acid substitution matrices reveals a sharp transition of the mode of sequence conservation in proteins},
JOURNAL = {Bioinformatics},
VOLUME = {20},
NUMBER = {16},
PAGES = {2504-2508},
YEAR = {2004},
URL = {http://bioinformatics.oxfordjournals.org/cgi/content/abstract/20/16/2504},
PUBLISHER = {Oxford University Press},
}
@article{Attoor-Dougherty-Chen-Bittner-Trent/04,
AUTHOR = {Attoor, Sanju and Dougherty, Edward R. and Chen, Yidong and Bittner, Michael L. and Trent, Jeffrey M.},
TITLE = {Which is better for cDNA-microarray-based classification: Ratios or direct intensities},
JOURNAL = {Bioinformatics},
VOLUME = {20},
NUMBER = {16},
PAGES = {2513-2520},
YEAR = {2004},
URL = {http://bioinformatics.oxfordjournals.org/cgi/content/abstract/20/16/2513},
PUBLISHER = {Oxford University Press},
}
@article{Huang-Ye-Chou-Yang-Chao/04,
AUTHOR = {Huang, Xiaoqiu and Ye, Liang and Chou, Hui-Hsien and Yang, I-Hsuan and Chao, Kun-Mao},
TITLE = {Efficient combination of multiple word models for improved sequence comparison},
JOURNAL = {Bioinformatics},
VOLUME = {20},
NUMBER = {16},
PAGES = {2529-2533},
YEAR = {2004},
URL = {http://bioinformatics.oxfordjournals.org/cgi/content/abstract/20/16/2529},
PUBLISHER = {Oxford University Press},
}
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AUTHOR = {Alexandridis, Roxana and Lin, Shili and Irwin, Mark},
TITLE = {Class discovery and classification of tumor samples using mixture modeling of gene expression data --- A unified approach},
JOURNAL = {Bioinformatics},
VOLUME = {20},
NUMBER = {16},
PAGES = {2545-2552},
YEAR = {2004},
URL = {http://bioinformatics.oxfordjournals.org/cgi/content/abstract/20/16/2545},
PUBLISHER = {Oxford University Press},
}
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AUTHOR = {Bro{\"{e}}t, Philippe and Lewin, Alex and Richardson, Sylvia and Dalmasso, Cyril and Magdelenat, Henri},
TITLE = {A mixture model-based strategy for selecting sets of genes in multiclass response microarray experiments},
JOURNAL = {Bioinformatics},
VOLUME = {20},
NUMBER = {16},
PAGES = {2562-2571},
YEAR = {2004},
URL = {http://bioinformatics.oxfordjournals.org/cgi/content/abstract/20/16/2562},
PUBLISHER = {Oxford University Press},
}
@article{Gupta-Zink-Korn-Vingron-Haas/04,
AUTHOR = {Gupta, S. and Zink, D. and Korn, B. and Vingron, M. and Haas, S.A.},
TITLE = {Genome wide identification and classification of alternative splicing based on EST data},
JOURNAL = {Bioinformatics},
VOLUME = {20},
NUMBER = {16},
PAGES = {2579-2585},
YEAR = {2004},
URL = {http://bioinformatics.oxfordjournals.org/cgi/content/abstract/20/16/2579},
PUBLISHER = {Oxford University Press},
}
@article{Chen-Oyang-Juan/04,
AUTHOR = {Chen, Chien-Yu and Oyang, Yen-Jen and Juan, Hsueh-Fen},
TITLE = {Incremental generation of summarized clustering hierarchy for protein family analysis},
JOURNAL = {Bioinformatics},
VOLUME = {20},
NUMBER = {16},
PAGES = {2586-2596},
YEAR = {2004},
URL = {http://bioinformatics.oxfordjournals.org/cgi/content/abstract/20/16/2586},
PUBLISHER = {Oxford University Press},
}
@article{Dodd-Korn-McShane-Chandramouli-Chuang/04,
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TITLE = {Correcting log ratios for signal saturation in cDNA microarrays},
JOURNAL = {Bioinformatics},
VOLUME = {20},
NUMBER = {16},
PAGES = {2685-2693},
YEAR = {2004},
URL = {http://bioinformatics.oxfordjournals.org/cgi/content/abstract/20/16/2685},
PUBLISHER = {Oxford University Press},
}
@article{Krishnan-Tang/04,
AUTHOR = {Krishnan, Arun and Tang, Francis},
TITLE = {Exhaustive whole-genome tandem repeats search},
JOURNAL = {Bioinformatics},
VOLUME = {20},
NUMBER = {16},
PAGES = {2702-2710},
YEAR = {2004},
URL = {http://bioinformatics.oxfordjournals.org/cgi/content/abstract/20/16/2702},
PUBLISHER = {Oxford University Press},
}
@article{Ji-Tan/04,
AUTHOR = {Ji, Liping and Tan, Kian-Lee},
TITLE = {Mining gene expression data for positive and negative co-regulated gene clusters},
JOURNAL = {Bioinformatics},
VOLUME = {20},
NUMBER = {16},
PAGES = {2711-2718},
YEAR = {2004},
URL = {http://bioinformatics.oxfordjournals.org/cgi/content/abstract/20/16/2711},
PUBLISHER = {Oxford University Press},
}
@article{Grad-Roth-Halfon-Church/04,
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TITLE = {Prediction of similarly acting cis-regulatory modules by subsequence profiling and comparative genomics in Drosophila melanogaster and D. pseudoobscura},
JOURNAL = {Bioinformatics},
VOLUME = {20},
NUMBER = {16},
PAGES = {2738-2750},
YEAR = {2004},
URL = {http://bioinformatics.oxfordjournals.org/cgi/content/abstract/20/16/2738},
PUBLISHER = {Oxford University Press},
}
@article{Kaur-Raghava/04,
AUTHOR = {Kaur, Harpreet and Raghava, G.P.S.},
TITLE = {A neural network method for prediction of $\beta$-turn types in proteins using evolutionary information},
JOURNAL = {Bioinformatics},
VOLUME = {20},
NUMBER = {16},
PAGES = {2751-2758},
YEAR = {2004},
URL = {http://bioinformatics.oxfordjournals.org/cgi/content/abstract/20/16/2751},
PUBLISHER = {Oxford University Press},
}
@article{Dou-Baisnee-Pollastri-Pecout-Nowick-Baldi/04,
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TITLE = {ICBS: A database of interactions between protein chains mediated by $\beta$-sheet formation},
JOURNAL = {Bioinformatics},
VOLUME = {20},
NUMBER = {16},
PAGES = {2767-2777},
YEAR = {2004},
URL = {http://bioinformatics.oxfordjournals.org/cgi/content/abstract/20/16/2767},
PUBLISHER = {Oxford University Press},
}
@article{Ballman-Grill-Oberg-Therneau/04,
AUTHOR = {Ballman, Karla V. and Grill, Diane E. and Oberg, Ann L. and Therneau, Terry M.},
TITLE = {Faster cyclic loess: Normalizing RNA arrays via linear models},
JOURNAL = {Bioinformatics},
VOLUME = {20},
NUMBER = {16},
PAGES = {2778-2786},
YEAR = {2004},
URL = {http://bioinformatics.oxfordjournals.org/cgi/content/abstract/20/16/2778},
PUBLISHER = {Oxford University Press},
}
@article{Keles-van_der_Laan-Vulpe/04,
AUTHOR = {Kele{\c{s}}, S{\"{u}}nd{\"{u}}z and van der Laan, Mark J. and Vulpe, Chris},
TITLE = {Regulatory motif finding by logic regression},
JOURNAL = {Bioinformatics},
VOLUME = {20},
NUMBER = {16},
PAGES = {2799-2811},
YEAR = {2004},
URL = {http://bioinformatics.oxfordjournals.org/cgi/content/abstract/20/16/2799},
PUBLISHER = {Oxford University Press},
}
@article{Delgrange-Rivals/04,
AUTHOR = {Delgrange, Olivier and Rivals, Eric},
TITLE = {STAR: An algorithm to Search for Tandem Approximate Repeats},
JOURNAL = {Bioinformatics},
VOLUME = {20},
NUMBER = {16},
PAGES = {2812-2820},
YEAR = {2004},
URL = {http://bioinformatics.oxfordjournals.org/cgi/content/abstract/20/16/2812},
PUBLISHER = {Oxford University Press},
}
@article{Almeida-Paixao-Souza-da_Costa-Barrientos-dos_Santos-de_Almeida-Vasconcelos/04,
AUTHOR = {Almeida, Luiz G.P. and Paix{\~{a}}o, Roger and Souza, Rangel C. and da Costa, Gisele C. and Barrientos, Frank J.A. and dos Santos, M. Trindade and de Almeida, Darcy F. and Vasconcelos, Ana Tereza R.},
TITLE = {A System for Automated Bacterial (genome) Integrated Annotation --- SABIA},
JOURNAL = {Bioinformatics},
VOLUME = {20},
NUMBER = {16},
PAGES = {2832-2833},
YEAR = {2004},
URL = {http://bioinformatics.oxfordjournals.org/cgi/content/abstract/20/16/2832},
PUBLISHER = {Oxford University Press},
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@article{Friedman-Ekollu-Rose-Hughes/04,
AUTHOR = {Friedman, Robert and Ekollu, Vikram and Rose, John R. and Hughes, Austin L.},
TITLE = {Dblox: A genome-wide test for ancient segmental duplication},
JOURNAL = {Bioinformatics},
VOLUME = {20},
NUMBER = {16},
PAGES = {2834-2835},
YEAR = {2004},
URL = {http://bioinformatics.oxfordjournals.org/cgi/content/abstract/20/16/2834},
PUBLISHER = {Oxford University Press},
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YEAR = {2004},
URL = {http://bioinformatics.oxfordjournals.org/cgi/content/abstract/20/16/2836},
PUBLISHER = {Oxford University Press},
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YEAR = {2004},
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PUBLISHER = {Oxford University Press},
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JOURNAL = {Bioinformatics},
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PUBLISHER = {Oxford University Press},
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JOURNAL = {Bioinformatics},
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YEAR = {2004},
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NUMBER = {17},
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PUBLISHER = {Oxford University Press},
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JOURNAL = {Bioinformatics},
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YEAR = {2004},
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TITLE = {Importing MAGE-ML format microarray data into BioConductor},
JOURNAL = {Bioinformatics},
VOLUME = {20},
NUMBER = {18},
PAGES = {3641-3642},
YEAR = {2004},
URL = {http://bioinformatics.oxfordjournals.org/cgi/content/abstract/20/18/3641},
PUBLISHER = {Oxford University Press},
}
@article{Haas-Delcher-Wortman-Salzberg/04,
AUTHOR = {Haas, Brian J. and Delcher, Arthur L. and Wortman, Jennifer R. and Salzberg, Steven L.},
TITLE = {DAGchainer: A tool for mining segmental genome duplications and synteny},
JOURNAL = {Bioinformatics},
VOLUME = {20},
NUMBER = {18},
PAGES = {3643-3646},
YEAR = {2004},
URL = {http://bioinformatics.oxfordjournals.org/cgi/content/abstract/20/18/3643},
PUBLISHER = {Oxford University Press},
}
@article{Forslund-Huson-Moulton/04,
AUTHOR = {Forslund, Kristoffer and Huson, Daniel H. and Moulton, Vincent},
TITLE = {VisRD --- Visual recombination detection},
JOURNAL = {Bioinformatics},
VOLUME = {20},
NUMBER = {18},
PAGES = {3654-3655},
YEAR = {2004},
URL = {http://bioinformatics.oxfordjournals.org/cgi/content/abstract/20/18/3654},
PUBLISHER = {Oxford University Press},
}
@article{Kaluszka-Gibas/04,
AUTHOR = {Kaluszka, Aaron and Gibas, Cynthia},
TITLE = {Interactive gene-order comparison for multiple small genomes},
JOURNAL = {Bioinformatics},
VOLUME = {20},
NUMBER = {18},
PAGES = {3662-3664},
YEAR = {2004},
URL = {http://bioinformatics.oxfordjournals.org/cgi/content/abstract/20/18/3662},
PUBLISHER = {Oxford University Press},
}
@article{Hitte-Derrien-Andre-Ostrander-Galibert/04,
AUTHOR = {Hitte, Christophe and Derrien, Thomas and Andr{\'{e}}, Catherine and Ostrander, Elaine A. and Galibert, Francis},
TITLE = {CRH\_Server: An online comparative and radiation hybrid mapping server for the canine genome},
JOURNAL = {Bioinformatics},
VOLUME = {20},
NUMBER = {18},
PAGES = {3665-3667},
YEAR = {2004},
URL = {http://bioinformatics.oxfordjournals.org/cgi/content/abstract/20/18/3665},
PUBLISHER = {Oxford University Press},
}
@article{Finocchiaro-Parise-Minardi-Alcalay-Muller/04,
AUTHOR = {Finocchiaro, Giacomo and Parise, Paola and Minardi, Simone P. and Alcalay, Myriam and M{\"{u}}ller, Heiko},
TITLE = {GenePicker: Replicate analysis of Affymetrix gene expression microarrays},
JOURNAL = {Bioinformatics},
VOLUME = {20},
NUMBER = {18},
PAGES = {3670-3672},
YEAR = {2004},
URL = {http://bioinformatics.oxfordjournals.org/cgi/content/abstract/20/18/3670},
PUBLISHER = {Oxford University Press},
}
@article{Gisel-Panetta-Grillo-Licciulli-Liuni-Saccone-Pesole/04,
AUTHOR = {Gisel, Andreas and Panetta, Maria and Grillo, Giorgio and Licciulli, Vito Flavio and Liuni, Sabino and Saccone, Cecilia and Pesole, Graziano},
TITLE = {DNAfan: A software tool for automated extraction and analysis of user-defined sequence regions},
JOURNAL = {Bioinformatics},
VOLUME = {20},
NUMBER = {18},
PAGES = {3676-3679},
YEAR = {2004},
URL = {http://bioinformatics.oxfordjournals.org/cgi/content/abstract/20/18/3676},
PUBLISHER = {Oxford University Press},
}
@article{Hallin-Ussery/04,
AUTHOR = {Hallin, Peter F. and Ussery, David W.},
TITLE = {CBS Genome Atlas Database: A dynamic storage for bioinformatic results and sequence data},
JOURNAL = {Bioinformatics},
VOLUME = {20},
NUMBER = {18},
PAGES = {3682-3686},
YEAR = {2004},
URL = {http://bioinformatics.oxfordjournals.org/cgi/content/abstract/20/18/3682},
PUBLISHER = {Oxford University Press},
}
@article{Knowlton-Dozmorov-Centola/04,
AUTHOR = {Knowlton, Nicholas and Dozmorov, Igor M. and Centola, Michael},
TITLE = {Microarray Data Analysis Toolbox (MDAT): For normalization, adjustment and analysis of gene expression data},
JOURNAL = {Bioinformatics},
VOLUME = {20},
NUMBER = {18},
PAGES = {3687-3690},
YEAR = {2004},
URL = {http://bioinformatics.oxfordjournals.org/cgi/content/abstract/20/18/3687},
PUBLISHER = {Oxford University Press},
}
@article{Catherinot-Labesse/04,
AUTHOR = {Catherinot, Vincent and Labesse, Gilles},
TITLE = {ViTO: Tool for refinement of protein sequence-structure alignments},
JOURNAL = {Bioinformatics},
VOLUME = {20},
NUMBER = {18},
PAGES = {3694-3696},
YEAR = {2004},
URL = {http://bioinformatics.oxfordjournals.org/cgi/content/abstract/20/18/3694},
PUBLISHER = {Oxford University Press},
}
@article{Frickey-Lupas/04,
AUTHOR = {Frickey, Tancred and Lupas, Andrei},
TITLE = {CLANS: A Java application for visualizing protein families based on pairwise similarity},
JOURNAL = {Bioinformatics},
VOLUME = {20},
NUMBER = {18},
PAGES = {3702-3704},
YEAR = {2004},
URL = {http://bioinformatics.oxfordjournals.org/cgi/content/abstract/20/18/3702},
PUBLISHER = {Oxford University Press},
}
@article{Boyle-Weng-Gollub-Jin-Botstein-Cherry-Sherlock/04,
AUTHOR = {Boyle, Elizabeth I. and Weng, Shuai and Gollub, Jeremy and Jin, Heng and Botstein, David and Cherry, J. Michael and Sherlock, Gavin},
TITLE = {GO::TermFinder --- Open source software for accessing Gene Ontology information and finding significantly enriched Gene Ontology terms associated with a list of genes},
JOURNAL = {Bioinformatics},
VOLUME = {20},
NUMBER = {18},
PAGES = {3710-3715},
YEAR = {2004},
URL = {http://bioinformatics.oxfordjournals.org/cgi/content/abstract/20/18/3710},
PUBLISHER = {Oxford University Press},
}
@article{Horn-Axel/03,
AUTHOR = {Horn, David and Axel, Inon},
TITLE = {Novel clustering algorithm for microarray expression data in a truncated SVD space},
JOURNAL = {Bioinformatics},
VOLUME = {19},
NUMBER = {9},
PAGES = {1110-1115},
YEAR = {2003},
URL = {http://bioinformatics.oxfordjournals.org/cgi/content/abstract/19/9/1110},
PUBLISHER = {Oxford University Press},
NOTE = {see Erratum in Bioinformatics, Vol. 19, 2003, No. 15, 2004-2004},
}
@article{Horn-Axel/03a,
AUTHOR = {Horn, David and Axel, Inon},
TITLE = {Erratum to ''Novel clustering algorithm for microarray expression data in a truncated SVD space''},
JOURNAL = {Bioinformatics},
VOLUME = {19},
NUMBER = {15},
PAGES = {2004-2004},
YEAR = {2003},
URL = {http://bioinformatics.oxfordjournals.org/cgi/content/abstract/19/15/2004},
PUBLISHER = {Oxford University Press},
NOTE = {Originally in Bioinformatics, Vol. 19, 2003, No. 16, 1110-1115},
}