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JOURNAL = {Bioinformatics},
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YEAR = {2003},
URL = {http://bioinformatics.oxfordjournals.org/cgi/content/abstract/19/15/1997},
PUBLISHER = {Oxford University Press},
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@article{Currey-Shapiro/97,
AUTHOR = {Currey, K.M. and Shapiro, B.A.},
TITLE = {Secondary structure computer prediction of the poliovirus 5' non-coding region is improved by a genetic algorithm},
JOURNAL = {Bioinformatics},
VOLUME = {13},
NUMBER = {1},
PAGES = {1-12},
YEAR = {1997},
URL = {http://bioinformatics.oxfordjournals.org/cgi/content/abstract/13/1/1},
PUBLISHER = {Oxford University Press},
}
@article{Chelvanayagam-Easteal/97,
AUTHOR = {Chelvanayagam, G. and Easteal, S.},
TITLE = {Correlating patterns in alignments of polymorphic sequences with experimental assays},
JOURNAL = {Bioinformatics},
VOLUME = {13},
NUMBER = {1},
PAGES = {13-22},
YEAR = {1997},
URL = {http://bioinformatics.oxfordjournals.org/cgi/content/abstract/13/1/13},
PUBLISHER = {Oxford University Press},
}
@article{Salamov-Solovyev/97,
AUTHOR = {Salamov, A.A. and Solovyev, V.V.},
TITLE = {Recognition of 3'-processing sites of human mRNA precursors},
JOURNAL = {Bioinformatics},
VOLUME = {13},
NUMBER = {1},
PAGES = {23-28},
YEAR = {1997},
URL = {http://bioinformatics.oxfordjournals.org/cgi/content/abstract/13/1/23},
PUBLISHER = {Oxford University Press},
}
@article{Chen-Hertz-Stormo/97,
AUTHOR = {Chen, Q.K. and Hertz, G.Z. and Stormo, G.D.},
TITLE = {PromFD 1.0: A computer program that predicts eukaryotic pol II promoters using strings and IMD matrices},
JOURNAL = {Bioinformatics},
VOLUME = {13},
NUMBER = {1},
PAGES = {29-35},
YEAR = {1997},
URL = {http://bioinformatics.oxfordjournals.org/cgi/content/abstract/13/1/29},
PUBLISHER = {Oxford University Press},
}
@article{Korotkov-Korotkova-Tulko/97,
AUTHOR = {Korotkov, E.V. and Korotkova, M.A. and Tulko, J.S.},
TITLE = {Latent sequence periodicity of some oncogenes and DNA-binding protein genes},
JOURNAL = {Bioinformatics},
VOLUME = {13},
NUMBER = {1},
PAGES = {37-44},
YEAR = {1997},
URL = {http://bioinformatics.oxfordjournals.org/cgi/content/abstract/13/1/37},
PUBLISHER = {Oxford University Press},
}
@article{Grice-Hughey-Speck/97,
AUTHOR = {Grice, J.A. and Hughey, R. and Speck, D.},
TITLE = {Reduced space sequence alignment},
JOURNAL = {Bioinformatics},
VOLUME = {13},
NUMBER = {1},
PAGES = {45-53},
YEAR = {1997},
URL = {http://bioinformatics.oxfordjournals.org/cgi/content/abstract/13/1/45},
PUBLISHER = {Oxford University Press},
}
@article{Shomer/97,
AUTHOR = {Shomer, B.},
TITLE = {EMBL sequence submission system --- An object-oriented approach to developing interactive data collection systems through the WWW},
JOURNAL = {Bioinformatics},
VOLUME = {13},
NUMBER = {1},
PAGES = {55-60},
YEAR = {1997},
URL = {http://bioinformatics.oxfordjournals.org/cgi/content/abstract/13/1/55},
PUBLISHER = {Oxford University Press},
}
@article{Hoogland-Biemont/97,
AUTHOR = {Hoogland, C. and Biemont, C.},
TITLE = {DROSOPOSON: A knowledge base on chromosomal localization of transposable element insertions in Drosophila},
JOURNAL = {Bioinformatics},
VOLUME = {13},
NUMBER = {1},
PAGES = {61-68},
YEAR = {1997},
URL = {http://bioinformatics.oxfordjournals.org/cgi/content/abstract/13/1/61},
PUBLISHER = {Oxford University Press},
}
@article{Chevalet-Gouzy-SanCristobal-Gaudy/97,
AUTHOR = {Chevalet, C. and Gouzy, J. and SanCristobal-Gaudy, M.},
TITLE = {Regional assignment of genetic markers using a somatic cell hybrid panel: A WWW interactive program available for the pig genome},
JOURNAL = {Bioinformatics},
VOLUME = {13},
NUMBER = {1},
PAGES = {69-73},
YEAR = {1997},
URL = {http://bioinformatics.oxfordjournals.org/cgi/content/abstract/13/1/69},
PUBLISHER = {Oxford University Press},
}
@article{Chao-Zhang-Ostell-Miller/97,
AUTHOR = {Chao, K.M. and Zhang, J. and Ostell, J. and Miller, W.},
TITLE = {A tool for aligning very similar DNA sequences},
JOURNAL = {Bioinformatics},
VOLUME = {13},
NUMBER = {1},
PAGES = {75-80},
YEAR = {1997},
URL = {http://bioinformatics.oxfordjournals.org/cgi/content/abstract/13/1/75},
PUBLISHER = {Oxford University Press},
}
@article{Miller-Fuchs/97,
AUTHOR = {Miller, G.S. and Fuchs, R.},
TITLE = {Post-processing of BLAST results using databases of clustered sequences},
JOURNAL = {Bioinformatics},
VOLUME = {13},
NUMBER = {1},
PAGES = {81-87},
YEAR = {1997},
URL = {http://bioinformatics.oxfordjournals.org/cgi/content/abstract/13/1/81},
PUBLISHER = {Oxford University Press},
}
@article{Frech-Quandt-Werner/97,
AUTHOR = {Frech, K. and Quandt, K. and Werner, T.},
TITLE = {Software for the analysis of DNA sequence elements of transcription},
JOURNAL = {Bioinformatics},
VOLUME = {13},
NUMBER = {1},
PAGES = {89-97},
YEAR = {1997},
URL = {http://bioinformatics.oxfordjournals.org/cgi/content/abstract/13/1/89},
PUBLISHER = {Oxford University Press},
}
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AUTHOR = {Roberts, M.G. and Phoenix, D.A. and Pewsey, A.R.},
TITLE = {An algorithm for the detection of surface-active alpha helices with the potential to anchor proteins at the membrane interface},
JOURNAL = {Bioinformatics},
VOLUME = {13},
NUMBER = {1},
PAGES = {99-106},
YEAR = {1997},
URL = {http://bioinformatics.oxfordjournals.org/cgi/content/abstract/13/1/99},
PUBLISHER = {Oxford University Press},
}
@article{Bains/97,
AUTHOR = {Bains, W.},
TITLE = {Hexanucleotide frequency database},
JOURNAL = {Bioinformatics},
VOLUME = {13},
NUMBER = {1},
PAGES = {107-108},
YEAR = {1997},
URL = {http://bioinformatics.oxfordjournals.org/cgi/content/abstract/13/1/107},
PUBLISHER = {Oxford University Press},
}
@article{Frech-Dietze-Werner/97,
AUTHOR = {Frech, K. and Dietze, P. and Werner, T.},
TITLE = {ConsInspector 3.0: New library and enhanced functionality},
JOURNAL = {Bioinformatics},
VOLUME = {13},
NUMBER = {1},
PAGES = {109-110},
YEAR = {1997},
URL = {http://bioinformatics.oxfordjournals.org/cgi/content/abstract/13/1/109},
PUBLISHER = {Oxford University Press},
}
@article{Ivanov-Rumjantsev-Skvortsov-Archakov/97,
AUTHOR = {Ivanov, A.S. and Rumjantsev, A.B and Skvortsov, V.S. and Archakov, A.I.},
TITLE = {ONIX: An interactive PC program for the examination of protein 3D structure from PDB},
JOURNAL = {Bioinformatics},
VOLUME = {13},
NUMBER = {1},
PAGES = {111-113},
YEAR = {1997},
URL = {http://bioinformatics.oxfordjournals.org/cgi/content/abstract/13/1/111},
PUBLISHER = {Oxford University Press},
}
@article{Bachinsky-Yarigin-Guseva-Kulichkov-Nizolenko/97,
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TITLE = {A bank of protein family patterns for rapid identification of possible functions of amino acid sequences},
JOURNAL = {Bioinformatics},
VOLUME = {13},
NUMBER = {2},
PAGES = {115-122},
YEAR = {1997},
URL = {http://bioinformatics.oxfordjournals.org/cgi/content/abstract/13/2/115},
PUBLISHER = {Oxford University Press},
}
@article{Woods-Sauro/97,
AUTHOR = {Woods, J.H. and Sauro, H.M.},
TITLE = {Elasticities in Metabolic Control Analysis: Algebraic derivation of simplified expressions},
JOURNAL = {Bioinformatics},
VOLUME = {13},
NUMBER = {2},
PAGES = {123-130},
YEAR = {1997},
URL = {http://bioinformatics.oxfordjournals.org/cgi/content/abstract/13/2/123},
PUBLISHER = {Oxford University Press},
}
@article{Rivals-Delgrange-Delahaye-Dauchet-Delorme-Henaut-Ollivier/97,
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TITLE = {Detection of significant patterns by compression algorithms: The case of approximate tandem repeats in DNA sequences},
JOURNAL = {Bioinformatics},
VOLUME = {13},
NUMBER = {2},
PAGES = {131-136},
YEAR = {1997},
URL = {http://bioinformatics.oxfordjournals.org/cgi/content/abstract/13/2/131},
PUBLISHER = {Oxford University Press},
}
@article{Glemet-Codani/97,
AUTHOR = {Glemet, E. and Codani, J.J.},
TITLE = {LASSAP, a LArge Scale Sequence compArison Package},
JOURNAL = {Bioinformatics},
VOLUME = {13},
NUMBER = {2},
PAGES = {137-143},
YEAR = {1997},
URL = {http://bioinformatics.oxfordjournals.org/cgi/content/abstract/13/2/137},
PUBLISHER = {Oxford University Press},
}
@article{Wozniak/97,
AUTHOR = {Wozniak, A.},
TITLE = {Using video-oriented instructions to speed up sequence comparison},
JOURNAL = {Bioinformatics},
VOLUME = {13},
NUMBER = {2},
PAGES = {145-150},
YEAR = {1997},
URL = {http://bioinformatics.oxfordjournals.org/cgi/content/abstract/13/2/145},
PUBLISHER = {Oxford University Press},
}
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TITLE = {Sequential and parallel algorithms for DNA sequencing},
JOURNAL = {Bioinformatics},
VOLUME = {13},
NUMBER = {2},
PAGES = {151-158},
YEAR = {1997},
URL = {http://bioinformatics.oxfordjournals.org/cgi/content/abstract/13/2/151},
PUBLISHER = {Oxford University Press},
}
@article{Varon-Garcia-Sevilla-Garcia-Moreno-Garcia-Canovas-Peyro-Duggleby/97,
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TITLE = {Computer program for the equations describing the steady state of enzyme reactions},
JOURNAL = {Bioinformatics},
VOLUME = {13},
NUMBER = {2},
PAGES = {159-167},
YEAR = {1997},
URL = {http://bioinformatics.oxfordjournals.org/cgi/content/abstract/13/2/159},
PUBLISHER = {Oxford University Press},
}
@article{Winder-Lefley-Smith/97,
AUTHOR = {Winder, L. and Lefley, M. and Smith, B.},
TITLE = {A key for freshwater invertebrates using fuzzy logic},
JOURNAL = {Bioinformatics},
VOLUME = {13},
NUMBER = {2},
PAGES = {169-174},
YEAR = {1997},
URL = {http://bioinformatics.oxfordjournals.org/cgi/content/abstract/13/2/169},
PUBLISHER = {Oxford University Press},
}
@article{Smith-Abajian-Hood/97,
AUTHOR = {Smith, T.M. and Abajian, C. and Hood, L.},
TITLE = {Hopper: Software for automating data tracking and flow in DNA sequencing},
JOURNAL = {Bioinformatics},
VOLUME = {13},
NUMBER = {2},
PAGES = {175-182},
YEAR = {1997},
URL = {http://bioinformatics.oxfordjournals.org/cgi/content/abstract/13/2/175},
PUBLISHER = {Oxford University Press},
}
@article{Tsukamoto-Takiguchi-Satou-Furuichi-Takagi-Kuhara/97,
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TITLE = {Application of a deductive database system to search for topological and similar three-dimensional structures in protein},
JOURNAL = {Bioinformatics},
VOLUME = {13},
NUMBER = {2},
PAGES = {183-190},
YEAR = {1997},
URL = {http://bioinformatics.oxfordjournals.org/cgi/content/abstract/13/2/183},
PUBLISHER = {Oxford University Press},
}
@article{Barrett-Hughey-Karplus/97,
AUTHOR = {Barrett, C. and Hughey, R. and Karplus, K.},
TITLE = {Scoring hidden Markov models},
JOURNAL = {Bioinformatics},
VOLUME = {13},
NUMBER = {2},
PAGES = {191-199},
YEAR = {1997},
URL = {http://bioinformatics.oxfordjournals.org/cgi/content/abstract/13/2/191},
PUBLISHER = {Oxford University Press},
}
@article{Cocea/97,
AUTHOR = {Cocea, L.},
TITLE = {Search the Human cDNA Database at TIGR},
JOURNAL = {Bioinformatics},
VOLUME = {13},
NUMBER = {2},
PAGES = {201-204},
YEAR = {1997},
URL = {http://bioinformatics.oxfordjournals.org/cgi/content/abstract/13/2/201},
PUBLISHER = {Oxford University Press},
}
@article{Belyi-Pevzner/97,
AUTHOR = {Belyi, I. and Pevzner, P.A.},
TITLE = {Software for DNA sequencing by hybridization},
JOURNAL = {Bioinformatics},
VOLUME = {13},
NUMBER = {2},
PAGES = {205-210},
YEAR = {1997},
URL = {http://bioinformatics.oxfordjournals.org/cgi/content/abstract/13/2/205},
PUBLISHER = {Oxford University Press},
}
@article{Mallios/97,
AUTHOR = {Mallios, R.R.},
TITLE = {An iterative algorithm for converting a class II MHC binding motif into a quantitative predictive model},
JOURNAL = {Bioinformatics},
VOLUME = {13},
NUMBER = {3},
PAGES = {211-215},
YEAR = {1997},
URL = {http://bioinformatics.oxfordjournals.org/cgi/content/abstract/13/3/211},
PUBLISHER = {Oxford University Press},
}
@article{Nadkarni/97,
AUTHOR = {Nadkarni, P.M.},
TITLE = {Mapdiff: Determining differences between two genomic maps},
JOURNAL = {Bioinformatics},
VOLUME = {13},
NUMBER = {3},
PAGES = {217-225},
YEAR = {1997},
URL = {http://bioinformatics.oxfordjournals.org/cgi/content/abstract/13/3/217},
PUBLISHER = {Oxford University Press},
}
@article{van_de_Peer-de_Wachter/97,
AUTHOR = {van de Peer, Y. and de Wachter, R.},
TITLE = {Construction of evolutionary distance trees with TREECON for Windows: Accounting for variation in nucleotide substitution rate among sites},
JOURNAL = {Bioinformatics},
VOLUME = {13},
NUMBER = {3},
PAGES = {227-230},
YEAR = {1997},
URL = {http://bioinformatics.oxfordjournals.org/cgi/content/abstract/13/3/227},
PUBLISHER = {Oxford University Press},
}
@article{Aloy-Cedano-Oliva-Aviles-Querol/97,
AUTHOR = {Aloy, P. and Cedano, J. and Oliva, B. and Aviles, F.X. and Querol, E.},
TITLE = {''TransMem'': A neural network implemented in Excel spreadsheets for predicting transmembrane domains of proteins},
JOURNAL = {Bioinformatics},
VOLUME = {13},
NUMBER = {3},
PAGES = {231-234},
YEAR = {1997},
URL = {http://bioinformatics.oxfordjournals.org/cgi/content/abstract/13/3/231},
PUBLISHER = {Oxford University Press},
}
@article{Rambaut-Grassly/97,
AUTHOR = {Rambaut, A. and Grassly, N.C.},
TITLE = {Seq-Gen: An application for the Monte Carlo simulation of DNA sequence evolution along phylogenetic trees},
JOURNAL = {Bioinformatics},
VOLUME = {13},
NUMBER = {3},
PAGES = {235-238},
YEAR = {1997},
URL = {http://bioinformatics.oxfordjournals.org/cgi/content/abstract/13/3/235},
PUBLISHER = {Oxford University Press},
}
@article{Fuchs/97,
AUTHOR = {Fuchs, R.},
TITLE = {Grouper --- Creation of marker sets for multiplexed genotyping},
JOURNAL = {Bioinformatics},
VOLUME = {13},
NUMBER = {3},
PAGES = {239-241},
YEAR = {1997},
URL = {http://bioinformatics.oxfordjournals.org/cgi/content/abstract/13/3/239},
PUBLISHER = {Oxford University Press},
}
@article{Frolov-Pika-Eroshkin/97,
AUTHOR = {Frolov, A.S. and Pika, I.S. and Eroshkin, A.M.},
TITLE = {ProMSED: Protein multiple sequence editor for Windows 3.11/95},
JOURNAL = {Bioinformatics},
VOLUME = {13},
NUMBER = {3},
PAGES = {243-248},
YEAR = {1997},
URL = {http://bioinformatics.oxfordjournals.org/cgi/content/abstract/13/3/243},
PUBLISHER = {Oxford University Press},
}
@article{Depiereux-Baudoux-Briffeuil-Reginster-de_Bolle-Vinals-Feytmans/97,
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TITLE = {Match-Box Server: A multiple sequence alignment tool placing emphasis on reliability},
JOURNAL = {Bioinformatics},
VOLUME = {13},
NUMBER = {3},
PAGES = {249-256},
YEAR = {1997},
URL = {http://bioinformatics.oxfordjournals.org/cgi/content/abstract/13/3/249},
PUBLISHER = {Oxford University Press},
}
@article{Panek-Vohradsky/97,
AUTHOR = {Panek, J. and Vohradsky, J.},
TITLE = {Object-oriented developmental environment for image-analysis applications: Implementation for 2D gel electrophoretogram analysis},
JOURNAL = {Bioinformatics},
VOLUME = {13},
NUMBER = {3},
PAGES = {257-262},
YEAR = {1997},
URL = {http://bioinformatics.oxfordjournals.org/cgi/content/abstract/13/3/257},
PUBLISHER = {Oxford University Press},
}
@article{Tiwari-Ramachandran-Bhattacharya-Bhattacharya-Ramaswamy/97,
AUTHOR = {Tiwari, S. and Ramachandran, S. and Bhattacharya, A. and Bhattacharya, S. and Ramaswamy, R.},
TITLE = {Prediction of probable genes by Fourier analysis of genomic sequences},
JOURNAL = {Bioinformatics},
VOLUME = {13},
NUMBER = {3},
PAGES = {263-270},
YEAR = {1997},
URL = {http://bioinformatics.oxfordjournals.org/cgi/content/abstract/13/3/263},
PUBLISHER = {Oxford University Press},
}
@article{Ehrlich-Munkel-Chirico-Langowski/97,
AUTHOR = {Ehrlich, L. and Munkel, C. and Chirico, G. and Langowski, J.},
TITLE = {A Brownian dynamics model for the chromatin fiber},
JOURNAL = {Bioinformatics},
VOLUME = {13},
NUMBER = {3},
PAGES = {271-279},
YEAR = {1997},
URL = {http://bioinformatics.oxfordjournals.org/cgi/content/abstract/13/3/271},
PUBLISHER = {Oxford University Press},
}
@article{Panzer-Cooley-Miller/97,
AUTHOR = {Panzer, S. and Cooley, L. and Miller, P.L.},
TITLE = {Using explicitly represented biological relationships for database navigation and searching via the World-Wide Web},
JOURNAL = {Bioinformatics},
VOLUME = {13},
NUMBER = {3},
PAGES = {281-290},
YEAR = {1997},
URL = {http://bioinformatics.oxfordjournals.org/cgi/content/abstract/13/3/281},
PUBLISHER = {Oxford University Press},
}
@article{Labesse-Colloch-Pothier-Mornon/97,
AUTHOR = {Labesse, G. and Colloc'h, N. and Pothier, J. and Mornon, J.P.},
TITLE = {P-SEA: A new efficient assignment of secondary structure from C alpha trace of proteins},
JOURNAL = {Bioinformatics},
VOLUME = {13},
NUMBER = {3},
PAGES = {291-295},
YEAR = {1997},
URL = {http://bioinformatics.oxfordjournals.org/cgi/content/abstract/13/3/291},
PUBLISHER = {Oxford University Press},
}
@article{Fiser-Dosztanyi-Simon/97,
AUTHOR = {Fiser, A. and Dosztanyi, Z. and Simon, I.},
TITLE = {The role of long-range interactions in defining the secondary structure of proteins is overestimated},
JOURNAL = {Bioinformatics},
VOLUME = {13},
NUMBER = {3},
PAGES = {297-301},
YEAR = {1997},
URL = {http://bioinformatics.oxfordjournals.org/cgi/content/abstract/13/3/297},
PUBLISHER = {Oxford University Press},
}
@article{Rambaut-Harvey-Nee/97,
AUTHOR = {Rambaut, A. and Harvey, P.H. and Nee, S.},
TITLE = {End-Epi: An application for inferring phylogenetic and population dynamical processes from molecular sequences},
JOURNAL = {Bioinformatics},
VOLUME = {13},
NUMBER = {3},
PAGES = {303-306},
YEAR = {1997},
URL = {http://bioinformatics.oxfordjournals.org/cgi/content/abstract/13/3/303},
PUBLISHER = {Oxford University Press},
}
@article{Rozas-Rozas/97,
AUTHOR = {Rozas, J. and Rozas, R.},
TITLE = {DnaSP version 2.0: A novel software package for extensive molecular population genetics analysis},
JOURNAL = {Bioinformatics},
VOLUME = {13},
NUMBER = {3},
PAGES = {307-311},
YEAR = {1997},
URL = {http://bioinformatics.oxfordjournals.org/cgi/content/abstract/13/3/307},
PUBLISHER = {Oxford University Press},
}
@article{Dopazo/97,
AUTHOR = {Dopazo, J.},
TITLE = {A new index to find regions showing an unexpected variability or conservation in sequence alignments},
JOURNAL = {Bioinformatics},
VOLUME = {13},
NUMBER = {3},
PAGES = {313-317},
YEAR = {1997},
URL = {http://bioinformatics.oxfordjournals.org/cgi/content/abstract/13/3/313},
PUBLISHER = {Oxford University Press},
}
@article{Pazos-Olmea-Valencia/97,
AUTHOR = {Pazos, F. and Olmea, O. and Valencia, A.},
TITLE = {A graphical interface for correlated mutations and other protein structure prediction methods},
JOURNAL = {Bioinformatics},
VOLUME = {13},
NUMBER = {3},
PAGES = {319-321},
YEAR = {1997},
URL = {http://bioinformatics.oxfordjournals.org/cgi/content/abstract/13/3/319},
PUBLISHER = {Oxford University Press},
}
@article{Wada-Inoue-Ohga-Yasue/97,
AUTHOR = {Wada, Y. and Inoue, K. and Ohga, K. and Yasue, H.},
TITLE = {Software tool for gene mapping: gRanch},
JOURNAL = {Bioinformatics},
VOLUME = {13},
NUMBER = {3},
PAGES = {323-324},
YEAR = {1997},
URL = {http://bioinformatics.oxfordjournals.org/cgi/content/abstract/13/3/323},
PUBLISHER = {Oxford University Press},
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@article{Pearson/97,
AUTHOR = {Pearson, W.R.},
TITLE = {Identifying distantly related protein sequences},
JOURNAL = {Bioinformatics},
VOLUME = {13},
NUMBER = {4},
PAGES = {325-332},
YEAR = {1997},
URL = {http://bioinformatics.oxfordjournals.org/cgi/content/abstract/13/4/325},
PUBLISHER = {Oxford University Press},
}
@article{Searls/97,
AUTHOR = {Searls, D.B.},
TITLE = {Linguistic approaches to biological sequences},
JOURNAL = {Bioinformatics},
VOLUME = {13},
NUMBER = {4},
PAGES = {333-344},
YEAR = {1997},
URL = {http://bioinformatics.oxfordjournals.org/cgi/content/abstract/13/4/333},
PUBLISHER = {Oxford University Press},
}
@article{Rost-ODonoghue/97,
AUTHOR = {Rost, B. and O'Donoghue, S.},
TITLE = {Sisyphus and prediction of protein structure},
JOURNAL = {Bioinformatics},
VOLUME = {13},
NUMBER = {4},
PAGES = {345-356},
YEAR = {1997},
URL = {http://bioinformatics.oxfordjournals.org/cgi/content/abstract/13/4/345},
PUBLISHER = {Oxford University Press},
}
@article{Akutsu-Onizuka-Ishikawa/97,
AUTHOR = {Akutsu, T. and Onizuka, K. and Ishikawa, M.},
TITLE = {Rapid protein fragment search using hash functions based on the Fourier transform},
JOURNAL = {Bioinformatics},
VOLUME = {13},
NUMBER = {4},
PAGES = {357-364},
YEAR = {1997},
URL = {http://bioinformatics.oxfordjournals.org/cgi/content/abstract/13/4/357},
PUBLISHER = {Oxford University Press},
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@article{Salzberg/97,
AUTHOR = {Salzberg, S.L.},
TITLE = {A method for identifying splice sites and translational start sites in eukaryotic mRNA},
JOURNAL = {Bioinformatics},
VOLUME = {13},
NUMBER = {4},
PAGES = {365-376},
YEAR = {1997},
URL = {http://bioinformatics.oxfordjournals.org/cgi/content/abstract/13/4/365},
PUBLISHER = {Oxford University Press},
}
@article{Hofmeyr-Cornish-Bowden/97,
AUTHOR = {Hofmeyr, J.H. and Cornish-Bowden, A.},
TITLE = {The reversible Hill equation: How to incorporate cooperative enzymes into metabolic models},
JOURNAL = {Bioinformatics},
VOLUME = {13},
NUMBER = {4},
PAGES = {377-385},
YEAR = {1997},
URL = {http://bioinformatics.oxfordjournals.org/cgi/content/abstract/13/4/377},
PUBLISHER = {Oxford University Press},
}
@article{Toh/97,
AUTHOR = {Toh, H.},
TITLE = {Introduction of a distance cut-off into structural alignment by the double dynamic programming algorithm},
JOURNAL = {Bioinformatics},
VOLUME = {13},
NUMBER = {4},
PAGES = {387-396},
YEAR = {1997},
URL = {http://bioinformatics.oxfordjournals.org/cgi/content/abstract/13/4/387},
PUBLISHER = {Oxford University Press},
}
@article{Grundy-Bailey-Elkan-Baker/97,
AUTHOR = {Grundy, W.N. and Bailey, T.L. and Elkan, C.P. and Baker, M.E.},
TITLE = {Meta-MEME: Motif-based hidden Markov models of protein families},
JOURNAL = {Bioinformatics},
VOLUME = {13},
NUMBER = {4},
PAGES = {397-406},
YEAR = {1997},
URL = {http://bioinformatics.oxfordjournals.org/cgi/content/abstract/13/4/397},
PUBLISHER = {Oxford University Press},
}
@article{Durand-Canard-Mornon/97,
AUTHOR = {Durand, P. and Canard, L. and Mornon, J.P.},
TITLE = {Visual BLAST and visual FASTA: Graphic workbenches for interactive analysis of full BLAST and FASTA outputs under MICROSOFT WINDOWS 95/NT},
JOURNAL = {Bioinformatics},
VOLUME = {13},
NUMBER = {4},
PAGES = {407-413},
YEAR = {1997},
URL = {http://bioinformatics.oxfordjournals.org/cgi/content/abstract/13/4/407},
PUBLISHER = {Oxford University Press},
}
@article{Ito-Matsuo-Nishikawa/97,
AUTHOR = {Ito, M. and Matsuo, Y. and Nishikawa, K.},
TITLE = {Prediction of protein secondary structure using the 3D-1D compatibility algorithm},
JOURNAL = {Bioinformatics},
VOLUME = {13},
NUMBER = {4},
PAGES = {415-424},
YEAR = {1997},
URL = {http://bioinformatics.oxfordjournals.org/cgi/content/abstract/13/4/415},
PUBLISHER = {Oxford University Press},
}
@article{Hooft-Sander-Vriend/97,
AUTHOR = {Hooft, R.W. and Sander, C. and Vriend, G.},
TITLE = {Objectively judging the quality of a protein structure from a Ramachandran plot},
JOURNAL = {Bioinformatics},
VOLUME = {13},
NUMBER = {4},
PAGES = {425-430},
YEAR = {1997},
URL = {http://bioinformatics.oxfordjournals.org/cgi/content/abstract/13/4/425},
PUBLISHER = {Oxford University Press},
}
@article{Biaudet-Samson-Bessieres/97,
AUTHOR = {Biaudet, V. and Samson, F. and Bessieres, P.},
TITLE = {Micado --- A network-oriented database for microbial genomes},
JOURNAL = {Bioinformatics},
VOLUME = {13},
NUMBER = {4},
PAGES = {431-438},
YEAR = {1997},
URL = {http://bioinformatics.oxfordjournals.org/cgi/content/abstract/13/4/431},
PUBLISHER = {Oxford University Press},
}
@article{Lay-Bray/97,
AUTHOR = {Lay, S. and Bray, D.},
TITLE = {A computer program for the analysis of protein complex formation},
JOURNAL = {Bioinformatics},
VOLUME = {13},
NUMBER = {4},
PAGES = {439-444},
YEAR = {1997},
URL = {http://bioinformatics.oxfordjournals.org/cgi/content/abstract/13/4/439},
PUBLISHER = {Oxford University Press},
}
@article{Schafer-Schoniger/97,
AUTHOR = {Schafer, J. and Schoniger, M.},
TITLE = {DISTREE: A tool for estimating genetic distances between aligned DNA sequences},
JOURNAL = {Bioinformatics},
VOLUME = {13},
NUMBER = {4},
PAGES = {445-451},
YEAR = {1997},
URL = {http://bioinformatics.oxfordjournals.org/cgi/content/abstract/13/4/445},
PUBLISHER = {Oxford University Press},
}
@article{Gill-Hodgman-Littler-Oxer-Montgomery-Taylor-Sanseau/97,
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TITLE = {A new dynamic tool to perform assembly of expressed sequence tags (ESTs)},
JOURNAL = {Bioinformatics},
VOLUME = {13},
NUMBER = {4},
PAGES = {453-457},
YEAR = {1997},
URL = {http://bioinformatics.oxfordjournals.org/cgi/content/abstract/13/4/453},
PUBLISHER = {Oxford University Press},
}
@article{Shapiro-Wu/97,
AUTHOR = {Shapiro, B.A. and Wu, J.C.},
TITLE = {Predicting RNA H-type pseudoknots with the massively parallel genetic algorithm},
JOURNAL = {Bioinformatics},
VOLUME = {13},
NUMBER = {4},
PAGES = {459-471},
YEAR = {1997},
URL = {http://bioinformatics.oxfordjournals.org/cgi/content/abstract/13/4/459},
PUBLISHER = {Oxford University Press},
}
@article{King-Saqi-Sayle-Sternberg/97,
AUTHOR = {King, R.D. and Saqi, M. and Sayle, R. and Sternberg, M.J.},
TITLE = {DSC: Public domain protein secondary structure predication},
JOURNAL = {Bioinformatics},
VOLUME = {13},
NUMBER = {4},
PAGES = {473-474},
YEAR = {1997},
URL = {http://bioinformatics.oxfordjournals.org/cgi/content/abstract/13/4/473},
PUBLISHER = {Oxford University Press},
}
@article{Toldo/97,
AUTHOR = {Toldo, L.I.},
TITLE = {JaMBW 1.1: Java-based Molecular Biologists' Workbench},
JOURNAL = {Bioinformatics},
VOLUME = {13},
NUMBER = {4},
PAGES = {475-476},
YEAR = {1997},
URL = {http://bioinformatics.oxfordjournals.org/cgi/content/abstract/13/4/475},
PUBLISHER = {Oxford University Press},
}
@article{Mott/97,
AUTHOR = {Mott, R.},
TITLE = {EST\_GENOME: A program to align spliced DNA sequences to unspliced genomic DNA},
JOURNAL = {Bioinformatics},
VOLUME = {13},
NUMBER = {4},
PAGES = {477-478},
YEAR = {1997},
URL = {http://bioinformatics.oxfordjournals.org/cgi/content/abstract/13/4/477},
PUBLISHER = {Oxford University Press},
}
@article{Amthor/97,
AUTHOR = {Amthor, J.S.},
TITLE = {Calculation of daylength},
JOURNAL = {Bioinformatics},
VOLUME = {13},
NUMBER = {4},
PAGES = {479-480},
YEAR = {1997},
URL = {http://bioinformatics.oxfordjournals.org/cgi/content/abstract/13/4/479},
PUBLISHER = {Oxford University Press},
}
@article{Andrade-Casari-de_Daruvar-Sander-Schneider-Tamames-Valencia-Ouzounis/97,
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TITLE = {Sequence analysis of the Methanococcus jannaschii genome and the prediction of protein function},
JOURNAL = {Bioinformatics},
VOLUME = {13},
NUMBER = {4},
PAGES = {481-483},
YEAR = {1997},
URL = {http://bioinformatics.oxfordjournals.org/cgi/content/abstract/13/4/481},
PUBLISHER = {Oxford University Press},
}
@article{Lorenz-Leeton-Owen/97,
AUTHOR = {Lorenz, E. and Leeton, S. and Owen, R.J.},
TITLE = {A simple method for sizing large fragments of bacterial DNA separated by PFGE},
JOURNAL = {Bioinformatics},
VOLUME = {13},
NUMBER = {4},
PAGES = {485-486},
YEAR = {1997},
URL = {http://bioinformatics.oxfordjournals.org/cgi/content/abstract/13/4/485},
PUBLISHER = {Oxford University Press},
}
@article{Shindyalov-Bourne/97,
AUTHOR = {Shindyalov, I.N. and Bourne, P.E.},
TITLE = {Protein data representation and query using optimized data decomposition},
JOURNAL = {Bioinformatics},
VOLUME = {13},
NUMBER = {5},
PAGES = {487-496},
YEAR = {1997},
URL = {http://bioinformatics.oxfordjournals.org/cgi/content/abstract/13/5/487},
PUBLISHER = {Oxford University Press},
}
@article{Goldberg-Ferrand-Nguyen-Boisvieux-Hazout/97,
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TITLE = {Bi-dimensional scaling map (BDS-Map): An approach for building large genetic maps},
JOURNAL = {Bioinformatics},
VOLUME = {13},
NUMBER = {5},
PAGES = {497-508},
YEAR = {1997},
URL = {http://bioinformatics.oxfordjournals.org/cgi/content/abstract/13/5/497},
PUBLISHER = {Oxford University Press},
}
@article{Jonassen/97,
AUTHOR = {Jonassen, I.},
TITLE = {Efficient discovery of conserved patterns using a pattern graph},
JOURNAL = {Bioinformatics},
VOLUME = {13},
NUMBER = {5},
PAGES = {509-522},
YEAR = {1997},
URL = {http://bioinformatics.oxfordjournals.org/cgi/content/abstract/13/5/509},
PUBLISHER = {Oxford University Press},
}
@article{Soderlund-Longden-Mott/97,
AUTHOR = {Soderlund, C. and Longden, I. and Mott, R.},
TITLE = {FPC: A system for building contigs from restriction fingerprinted clones},
JOURNAL = {Bioinformatics},
VOLUME = {13},
NUMBER = {5},
PAGES = {523-535},
YEAR = {1997},
URL = {http://bioinformatics.oxfordjournals.org/cgi/content/abstract/13/5/523},
PUBLISHER = {Oxford University Press},
}
@article{Forsythe-Karp-Mavrovouniotis/97,
AUTHOR = {Forsythe, R.G., Jr. and Karp, P.D. and Mavrovouniotis, M.L.},
TITLE = {Estimation of equilibrium constants using automated group contribution methods},
JOURNAL = {Bioinformatics},
VOLUME = {13},
NUMBER = {5},
PAGES = {537-543},
YEAR = {1997},
URL = {http://bioinformatics.oxfordjournals.org/cgi/content/abstract/13/5/537},
PUBLISHER = {Oxford University Press},
}
@article{Shomer/97a,
AUTHOR = {Shomer, B.},
TITLE = {Seqalert --- A daily sequence alertness server for the EMBL and SWISSPROT databases},
JOURNAL = {Bioinformatics},
VOLUME = {13},
NUMBER = {5},
PAGES = {545-547},
YEAR = {1997},
URL = {http://bioinformatics.oxfordjournals.org/cgi/content/abstract/13/5/545},
PUBLISHER = {Oxford University Press},
}
@article{Williams-Zobel/97,
AUTHOR = {Williams, H. and Zobel, J.},
TITLE = {Compression of nucleotide databases for fast searching},
JOURNAL = {Bioinformatics},
VOLUME = {13},
NUMBER = {5},
PAGES = {549-554},
YEAR = {1997},
URL = {http://bioinformatics.oxfordjournals.org/cgi/content/abstract/13/5/549},
PUBLISHER = {Oxford University Press},
}
@article{Yang/97,
AUTHOR = {Yang, Z.},
TITLE = {PAML: A program package for phylogenetic analysis by maximum likelihood},
JOURNAL = {Bioinformatics},
VOLUME = {13},
NUMBER = {5},
PAGES = {555-556},
YEAR = {1997},
URL = {http://bioinformatics.oxfordjournals.org/cgi/content/abstract/13/5/555},
PUBLISHER = {Oxford University Press},
}
@article{Gronwald-Boyko-Sykes/97,
AUTHOR = {Gronwald, W. and Boyko, R.F. and Sykes, B.D.},
TITLE = {GSC: A graphical program for NMR chemical shift comparison},
JOURNAL = {Bioinformatics},
VOLUME = {13},
NUMBER = {5},
PAGES = {557-558},
YEAR = {1997},
URL = {http://bioinformatics.oxfordjournals.org/cgi/content/abstract/13/5/557},
PUBLISHER = {Oxford University Press},
}
@article{Grassly-Adachi-Rambaut/97,
AUTHOR = {Grassly, N.C. and Adachi, J. and Rambaut, A.},
TITLE = {PSeq-Gen: An application for the Monte Carlo simulation of protein sequence evolution along phylogenetic trees},
JOURNAL = {Bioinformatics},
VOLUME = {13},
NUMBER = {5},
PAGES = {559-560},
YEAR = {1997},
URL = {http://bioinformatics.oxfordjournals.org/cgi/content/abstract/13/5/559},
PUBLISHER = {Oxford University Press},
}
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TITLE = {A platform-independent graphical user interface for SEQSEE and XALIGN},
JOURNAL = {Bioinformatics},
VOLUME = {13},
NUMBER = {5},
PAGES = {561-562},
YEAR = {1997},
URL = {http://bioinformatics.oxfordjournals.org/cgi/content/abstract/13/5/561},
PUBLISHER = {Oxford University Press},
}
@article{Rolland-Bon-Thomas/97,
AUTHOR = {Rolland, J.P. and Bon, P. and Thomas, D.},
TITLE = {MACS: Automatic counting of objects based on shape recognition},
JOURNAL = {Bioinformatics},
VOLUME = {13},
NUMBER = {5},
PAGES = {563-564},
YEAR = {1997},
URL = {http://bioinformatics.oxfordjournals.org/cgi/content/abstract/13/5/563},
PUBLISHER = {Oxford University Press},
}
@article{Zhang-Wong/97,
AUTHOR = {Zhang, C. and Wong, A.K.},
TITLE = {A genetic algorithm for multiple molecular sequence alignment},
JOURNAL = {Bioinformatics},
VOLUME = {13},
NUMBER = {6},
PAGES = {565-581},
YEAR = {1997},
URL = {http://bioinformatics.oxfordjournals.org/cgi/content/abstract/13/6/565},
PUBLISHER = {Oxford University Press},
}
@article{Gorodkin-Heyer-Brunak-Stormo/97,
AUTHOR = {Gorodkin, J. and Heyer, L.J. and Brunak, S. and Stormo, G.D.},
TITLE = {Displaying the information contents of structural RNA alignments: The structure logos},
JOURNAL = {Bioinformatics},
VOLUME = {13},
NUMBER = {6},
PAGES = {583-586},
YEAR = {1997},
URL = {http://bioinformatics.oxfordjournals.org/cgi/content/abstract/13/6/583},
PUBLISHER = {Oxford University Press},
}
@article{Doris-Hayward-Lester-JK/97,
AUTHOR = {Doris, P.A. and Hayward-Lester, A. and J.K., Sr. Hays},
TITLE = {Q-RT-PCR: Data analysis software for measurement of gene expression by competitive RT-PCR},
JOURNAL = {Bioinformatics},
VOLUME = {13},
NUMBER = {6},
PAGES = {587-591},
YEAR = {1997},
URL = {http://bioinformatics.oxfordjournals.org/cgi/content/abstract/13/6/587},
PUBLISHER = {Oxford University Press},
}
@article{Kato-Takahashi/97,
AUTHOR = {Kato, H. and Takahashi, Y.},
TITLE = {SS3D-P2: A three dimensional substructure search program for protein motifs based on secondary structure elements},
JOURNAL = {Bioinformatics},
VOLUME = {13},
NUMBER = {6},
PAGES = {593-600},
YEAR = {1997},
URL = {http://bioinformatics.oxfordjournals.org/cgi/content/abstract/13/6/593},
PUBLISHER = {Oxford University Press},
}
@article{Gouzy-Eugene-Greene-Kahn-Corpet/97,
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TITLE = {XDOM, a graphical tool to analyse domain arrangements in any set of protein sequences},
JOURNAL = {Bioinformatics},
VOLUME = {13},
NUMBER = {6},
PAGES = {601-608},
YEAR = {1997},
URL = {http://bioinformatics.oxfordjournals.org/cgi/content/abstract/13/6/601},
PUBLISHER = {Oxford University Press},
}
@article{Guerdoux-Jamet-Lavenier/97,
AUTHOR = {Guerdoux-Jamet, P. and Lavenier, D.},
TITLE = {SAMBA: Hardware accelerator for biological sequence comparison},
JOURNAL = {Bioinformatics},
VOLUME = {13},
NUMBER = {6},
PAGES = {609-615},
YEAR = {1997},
URL = {http://bioinformatics.oxfordjournals.org/cgi/content/abstract/13/6/609},
PUBLISHER = {Oxford University Press},
}
@article{Fenyo/97,
AUTHOR = {Fenyo, D.},
TITLE = {A software tool for the analysis of mass spectrometric disulfide mapping experiments},
JOURNAL = {Bioinformatics},
VOLUME = {13},
NUMBER = {6},
PAGES = {617-618},
YEAR = {1997},
URL = {http://bioinformatics.oxfordjournals.org/cgi/content/abstract/13/6/617},
PUBLISHER = {Oxford University Press},
}
@article{Hegyi-Lai-Bork/97,
AUTHOR = {Hegyi, H. and Lai, J.M. and Bork, P.},
TITLE = {The Sequence Alerting Server --- A new WEB server},
JOURNAL = {Bioinformatics},
VOLUME = {13},
NUMBER = {6},
PAGES = {619-620},
YEAR = {1997},
URL = {http://bioinformatics.oxfordjournals.org/cgi/content/abstract/13/6/619},
PUBLISHER = {Oxford University Press},
}
@article{Sicheritz-Ponten/97,
AUTHOR = {Sicheritz-Ponten, T.},
TITLE = {BioWish: A molecular biology command extension to Tcl/Tk},
JOURNAL = {Bioinformatics},
VOLUME = {13},
NUMBER = {6},
PAGES = {621-622},
YEAR = {1997},
URL = {http://bioinformatics.oxfordjournals.org/cgi/content/abstract/13/6/621},
PUBLISHER = {Oxford University Press},
}
@article{Law-Burt/97,
AUTHOR = {Law, A.S. and Burt, D.W.},
TITLE = {Two applications to facilitate the viewing of database search result files on the Macintosh},
JOURNAL = {Bioinformatics},
VOLUME = {13},
NUMBER = {6},
PAGES = {623-624},
YEAR = {1997},
URL = {http://bioinformatics.oxfordjournals.org/cgi/content/abstract/13/6/623},
PUBLISHER = {Oxford University Press},
}
@article{Stoye-Moulton-Dress/97,
AUTHOR = {Stoye, J. and Moulton, V. and Dress, A.W.},
TITLE = {DCA: An efficient implementation of the divide-and-conquer approach to simultaneous multiple sequence alignment},
JOURNAL = {Bioinformatics},
VOLUME = {13},
NUMBER = {6},
PAGES = {625-626},
YEAR = {1997},
URL = {http://bioinformatics.oxfordjournals.org/cgi/content/abstract/13/6/625},
PUBLISHER = {Oxford University Press},
}