@article{Julich/95,
AUTHOR = {Julich, A.},
TITLE = {Implementations of BLAST for parallel computers},
JOURNAL = {Bioinformatics},
VOLUME = {11},
NUMBER = {1},
PAGES = {3-6},
YEAR = {1995},
URL = {http://bioinformatics.oxfordjournals.org/cgi/content/abstract/11/1/3},
PUBLISHER = {Oxford University Press},
}
@article{Resenchuk-Blinov/95,
AUTHOR = {Resenchuk, S.M. and Blinov, V.M},
TITLE = {ALIGNMENT SERVICE: Creation and processing of alignments of sequences of unlimited length},
JOURNAL = {Bioinformatics},
VOLUME = {11},
NUMBER = {1},
PAGES = {7-11},
YEAR = {1995},
URL = {http://bioinformatics.oxfordjournals.org/cgi/content/abstract/11/1/7},
PUBLISHER = {Oxford University Press},
}
@article{Hirosawa-Totoki-Hoshida-Ishikawa/95,
AUTHOR = {Hirosawa, M. and Totoki, Y. and Hoshida, M. and Ishikawa, M.},
TITLE = {Comprehensive study on iterative algorithms of multiple sequence alignment},
JOURNAL = {Bioinformatics},
VOLUME = {11},
NUMBER = {1},
PAGES = {13-18},
YEAR = {1995},
URL = {http://bioinformatics.oxfordjournals.org/cgi/content/abstract/11/1/13},
PUBLISHER = {Oxford University Press},
}
@article{Wright-Morse-Tardivel/95,
AUTHOR = {Wright, J.F. and Morse, D.R and Tardivel, G.M},
TITLE = {An investigation into the use of hypertext as a user interface to taxonomic keys},
JOURNAL = {Bioinformatics},
VOLUME = {11},
NUMBER = {1},
PAGES = {19-27},
YEAR = {1995},
URL = {http://bioinformatics.oxfordjournals.org/cgi/content/abstract/11/1/19},
PUBLISHER = {Oxford University Press},
}
@article{Granjeon-Tarroux/95,
AUTHOR = {Granjeon, E. and Tarroux, P.},
TITLE = {Detection of compositional constraints in nucleic acid sequences using neural networks},
JOURNAL = {Bioinformatics},
VOLUME = {11},
NUMBER = {1},
PAGES = {29-37},
YEAR = {1995},
URL = {http://bioinformatics.oxfordjournals.org/cgi/content/abstract/11/1/29},
PUBLISHER = {Oxford University Press},
}
@article{Eroshkin-Fomin-Zhilkin-Ivanisenko-Kondrakhin/95,
AUTHOR = {Eroshkin, A.M and Fomin, V.I and Zhilkin, P.A and Ivanisenko, V.V. and Kondrakhin, Y.V},
TITLE = {PROANAL version 2: Multifunctional program for analysis of multiple protein sequence alignments and for studying the structure-activity relationships in protein families},
JOURNAL = {Bioinformatics},
VOLUME = {11},
NUMBER = {1},
PAGES = {39-44},
YEAR = {1995},
URL = {http://bioinformatics.oxfordjournals.org/cgi/content/abstract/11/1/39},
PUBLISHER = {Oxford University Press},
}
@article{White-FitzHugh/95,
AUTHOR = {White, O. and FitzHugh, W.},
TITLE = {A rapid retrieval tool for operating on large, flat archive files},
JOURNAL = {Bioinformatics},
VOLUME = {11},
NUMBER = {1},
PAGES = {45-47},
YEAR = {1995},
URL = {http://bioinformatics.oxfordjournals.org/cgi/content/abstract/11/1/45},
PUBLISHER = {Oxford University Press},
}
@article{Bodlaender-Downey-Fellows-Hallett-Wareham/95,
AUTHOR = {Bodlaender, H.L. and Downey, R.G. and Fellows, M.R. and Hallett, M.T. and Wareham, H.T.},
TITLE = {Parameterized complexity analysis in computational biology},
JOURNAL = {Bioinformatics},
VOLUME = {11},
NUMBER = {1},
PAGES = {49-57},
YEAR = {1995},
URL = {http://bioinformatics.oxfordjournals.org/cgi/content/abstract/11/1/49},
PUBLISHER = {Oxford University Press},
}
@article{Sagot-Viari-Pothier-Soldano/95,
AUTHOR = {Sagot, M.F. and Viari, A. and Pothier, J. and Soldano, H.},
TITLE = {Finding flexible patterns in a text: An application to three-dimensional molecular matching},
JOURNAL = {Bioinformatics},
VOLUME = {11},
NUMBER = {1},
PAGES = {59-70},
YEAR = {1995},
URL = {http://bioinformatics.oxfordjournals.org/cgi/content/abstract/11/1/59},
PUBLISHER = {Oxford University Press},
}
@article{Manocha-Zhu-Wright/95,
AUTHOR = {Manocha, D. and Zhu, Y. and Wright, W.},
TITLE = {Conformational analysis of molecular chains using nano-kinematics},
JOURNAL = {Bioinformatics},
VOLUME = {11},
NUMBER = {1},
PAGES = {71-86},
YEAR = {1995},
URL = {http://bioinformatics.oxfordjournals.org/cgi/content/abstract/11/1/71},
PUBLISHER = {Oxford University Press},
}
@article{Sandak-Nussinov-Wolfson/95,
AUTHOR = {Sandak, B. and Nussinov, R. and Wolfson, H.J.},
TITLE = {An automated computer vision and robotics-based technique for 3-D flexible biomolecular docking and matching},
JOURNAL = {Bioinformatics},
VOLUME = {11},
NUMBER = {1},
PAGES = {87-99},
YEAR = {1995},
URL = {http://bioinformatics.oxfordjournals.org/cgi/content/abstract/11/1/87},
PUBLISHER = {Oxford University Press},
}
@article{Perochon-Dorisse-Chetouani-Aurel-Iscolo-Michot/95,
AUTHOR = {Perochon-Dorisse, J. and Chetouani, F. and Aurel, S. and Iscolo, N. and Michot, B.},
TITLE = {RNA-d2: A computer program for editing and display of RNA secondary structures},
JOURNAL = {Bioinformatics},
VOLUME = {11},
NUMBER = {1},
PAGES = {101-109},
YEAR = {1995},
URL = {http://bioinformatics.oxfordjournals.org/cgi/content/abstract/11/1/101},
PUBLISHER = {Oxford University Press},
}
@article{Schoniger-von_Haeseler/95,
AUTHOR = {Schoniger, M. and von Haeseler, A.},
TITLE = {Simulating efficiently the evolution of DNA sequences},
JOURNAL = {Bioinformatics},
VOLUME = {11},
NUMBER = {1},
PAGES = {111-115},
YEAR = {1995},
URL = {http://bioinformatics.oxfordjournals.org/cgi/content/abstract/11/1/111},
PUBLISHER = {Oxford University Press},
}
@article{Xu-Mural-Uberbacher/95,
AUTHOR = {Xu, Y. and Mural, R.J. and Uberbacher, E.C.},
TITLE = {Correcting sequencing errors in DNA coding regions using a dynamic programming approach},
JOURNAL = {Bioinformatics},
VOLUME = {11},
NUMBER = {2},
PAGES = {117-124},
YEAR = {1995},
URL = {http://bioinformatics.oxfordjournals.org/cgi/content/abstract/11/2/117},
PUBLISHER = {Oxford University Press},
}
@article{Nakata/95,
AUTHOR = {Nakata, K.},
TITLE = {Prediction of zinc finger DNA binding protein},
JOURNAL = {Bioinformatics},
VOLUME = {11},
NUMBER = {2},
PAGES = {125-131},
YEAR = {1995},
URL = {http://bioinformatics.oxfordjournals.org/cgi/content/abstract/11/2/125},
PUBLISHER = {Oxford University Press},
}
@article{Ligr-Ron-Natr/95,
AUTHOR = {Ligr, M. and Ron, C. and Natr, L.},
TITLE = {Calculation of the photoperiod length},
JOURNAL = {Bioinformatics},
VOLUME = {11},
NUMBER = {2},
PAGES = {133-139},
YEAR = {1995},
URL = {http://bioinformatics.oxfordjournals.org/cgi/content/abstract/11/2/133},
PUBLISHER = {Oxford University Press},
}
@article{Perrakis-Constantinides-Athanasiades-Hamodrakas/95,
AUTHOR = {Perrakis, A. and Constantinides, C. and Athanasiades, A. and Hamodrakas, S.J.},
TITLE = {PBM: A software package to create, display and manipulate interactively models of small molecules and proteins on IBM-compatible PCs},
JOURNAL = {Bioinformatics},
VOLUME = {11},
NUMBER = {2},
PAGES = {141-145},
YEAR = {1995},
URL = {http://bioinformatics.oxfordjournals.org/cgi/content/abstract/11/2/141},
PUBLISHER = {Oxford University Press},
}
@article{Chao-Zhang-Ostell-Miller/95,
AUTHOR = {Chao, K.M. and Zhang, J. and Ostell, J. and Miller, W.},
TITLE = {A local alignment tool for very long DNA sequences},
JOURNAL = {Bioinformatics},
VOLUME = {11},
NUMBER = {2},
PAGES = {147-153},
YEAR = {1995},
URL = {http://bioinformatics.oxfordjournals.org/cgi/content/abstract/11/2/147},
PUBLISHER = {Oxford University Press},
}
@article{Smith-Bernstein/95,
AUTHOR = {Smith, G.D. and Bernstein, K.E.},
TITLE = {BULLET: A computer simulation of shotgun DNA sequencing},
JOURNAL = {Bioinformatics},
VOLUME = {11},
NUMBER = {2},
PAGES = {155-157},
YEAR = {1995},
URL = {http://bioinformatics.oxfordjournals.org/cgi/content/abstract/11/2/155},
PUBLISHER = {Oxford University Press},
}
@article{Watanabe-Otsuka/95,
AUTHOR = {Watanabe, H. and Otsuka, J.},
TITLE = {A comprehensive representation of extensive similarity linkage between large numbers of proteins},
JOURNAL = {Bioinformatics},
VOLUME = {11},
NUMBER = {2},
PAGES = {159-166},
YEAR = {1995},
URL = {http://bioinformatics.oxfordjournals.org/cgi/content/abstract/11/2/159},
PUBLISHER = {Oxford University Press},
}
@article{Nesti-Poli-Chicca-Ambrosino-Scapoli-Barrai/95,
AUTHOR = {Nesti, C. and Poli, G. and Chicca, M. and Ambrosino, P. and Scapoli, C. and Barrai, I.},
TITLE = {Phylogeny inferred from codon usage pattern in 31 organisms},
JOURNAL = {Bioinformatics},
VOLUME = {11},
NUMBER = {2},
PAGES = {167-171},
YEAR = {1995},
URL = {http://bioinformatics.oxfordjournals.org/cgi/content/abstract/11/2/167},
PUBLISHER = {Oxford University Press},
}
@article{Veklerov-Martin-Theil/95,
AUTHOR = {Veklerov, E. and Martin, C.H. and Theil, E.H.},
TITLE = {TRAMP: A software package for generating transposon maps},
JOURNAL = {Bioinformatics},
VOLUME = {11},
NUMBER = {2},
PAGES = {173-179},
YEAR = {1995},
URL = {http://bioinformatics.oxfordjournals.org/cgi/content/abstract/11/2/173},
PUBLISHER = {Oxford University Press},
}
@article{Thompson/95,
AUTHOR = {Thompson, J.D.},
TITLE = {Introducing variable gap penalties to sequence alignment in linear space},
JOURNAL = {Bioinformatics},
VOLUME = {11},
NUMBER = {2},
PAGES = {181-186},
YEAR = {1995},
URL = {http://bioinformatics.oxfordjournals.org/cgi/content/abstract/11/2/181},
PUBLISHER = {Oxford University Press},
}
@article{Metzker-Allain-Gibbs/95,
AUTHOR = {Metzker, M.L. and Allain, K.M. and Gibbs, R.A.},
TITLE = {Accurate determination of DNA in agarose gels using the novel algorithm GelScann(1.0)},
JOURNAL = {Bioinformatics},
VOLUME = {11},
NUMBER = {2},
PAGES = {187-194},
YEAR = {1995},
URL = {http://bioinformatics.oxfordjournals.org/cgi/content/abstract/11/2/187},
PUBLISHER = {Oxford University Press},
}
@article{Mrazek-Kypr/95,
AUTHOR = {Mrazek, J. and Kypr, J.},
TITLE = {Middle-range clustering of nucleotides in genomes},
JOURNAL = {Bioinformatics},
VOLUME = {11},
NUMBER = {2},
PAGES = {195-199},
YEAR = {1995},
URL = {http://bioinformatics.oxfordjournals.org/cgi/content/abstract/11/2/195},
PUBLISHER = {Oxford University Press},
}
@article{Ehlde-Zacchi/95,
AUTHOR = {Ehlde, M. and Zacchi, G.},
TITLE = {MIST: A user-friendly metabolic simulator},
JOURNAL = {Bioinformatics},
VOLUME = {11},
NUMBER = {2},
PAGES = {201-207},
YEAR = {1995},
URL = {http://bioinformatics.oxfordjournals.org/cgi/content/abstract/11/2/201},
PUBLISHER = {Oxford University Press},
}
@article{Ma-Miyazaki-Sugawara/95,
AUTHOR = {Ma, J. and Miyazaki, S. and Sugawara, H.},
TITLE = {A handy database for culture collections worldwide: CCINFO-PC},
JOURNAL = {Bioinformatics},
VOLUME = {11},
NUMBER = {2},
PAGES = {209-212},
YEAR = {1995},
URL = {http://bioinformatics.oxfordjournals.org/cgi/content/abstract/11/2/209},
PUBLISHER = {Oxford University Press},
}
@article{Belova-Likhoshvai-Bazhan-Kulichkov/95,
AUTHOR = {Belova, O.E. and Likhoshvai, V.A. and Bazhan, S.I. and Kulichkov, V.A.},
TITLE = {A computer system for analysis and integrated description of regulation of the molecular-genetic system of interferon induction and action},
JOURNAL = {Bioinformatics},
VOLUME = {11},
NUMBER = {2},
PAGES = {213-218},
YEAR = {1995},
URL = {http://bioinformatics.oxfordjournals.org/cgi/content/abstract/11/2/213},
PUBLISHER = {Oxford University Press},
}
@article{Doelz-Eggenberger/95,
AUTHOR = {Doelz, R. and Eggenberger, F.},
TITLE = {A compression mechanism for sequence databases to improve the efficiency of conventional tools},
JOURNAL = {Bioinformatics},
VOLUME = {11},
NUMBER = {2},
PAGES = {219-223},
YEAR = {1995},
URL = {http://bioinformatics.oxfordjournals.org/cgi/content/abstract/11/2/219},
PUBLISHER = {Oxford University Press},
}
@article{Doelz/95,
AUTHOR = {Doelz, R.},
TITLE = {Optimal production of biological documentation: The JAM format},
JOURNAL = {Bioinformatics},
VOLUME = {11},
NUMBER = {2},
PAGES = {224-226},
YEAR = {1995},
URL = {http://bioinformatics.oxfordjournals.org/cgi/content/abstract/11/2/224},
PUBLISHER = {Oxford University Press},
}
@article{Karp-Newberg/95,
AUTHOR = {Karp, R.M. and Newberg, L.A.},
TITLE = {An algorithm for analysing probed partial digestion experiments},
JOURNAL = {Bioinformatics},
VOLUME = {11},
NUMBER = {3},
PAGES = {229-235},
YEAR = {1995},
URL = {http://bioinformatics.oxfordjournals.org/cgi/content/abstract/11/3/229},
PUBLISHER = {Oxford University Press},
}
@article{Jung-Perkins-Zhong-Pramanik-Beaman/95,
AUTHOR = {Jung, S. and Perkins, S. and Zhong, Y. and Pramanik, S. and Beaman, J.},
TITLE = {A new data model for biological classification},
JOURNAL = {Bioinformatics},
VOLUME = {11},
NUMBER = {3},
PAGES = {237-246},
YEAR = {1995},
URL = {http://bioinformatics.oxfordjournals.org/cgi/content/abstract/11/3/237},
PUBLISHER = {Oxford University Press},
}
@article{Purvis-Rambaut/95,
AUTHOR = {Purvis, A. and Rambaut, A.},
TITLE = {Comparative analysis by independent contrasts (CAIC): An Apple Macintosh application for analysing comparative data},
JOURNAL = {Bioinformatics},
VOLUME = {11},
NUMBER = {3},
PAGES = {247-251},
YEAR = {1995},
URL = {http://bioinformatics.oxfordjournals.org/cgi/content/abstract/11/3/247},
PUBLISHER = {Oxford University Press},
}
@article{Vivarelli-Giusti-Villani-Campanini-Fariselli-Compiani-Casadio/95,
AUTHOR = {Vivarelli, F. and Giusti, G. and Villani, M. and Campanini, R. and Fariselli, P. and Compiani, M. and Casadio, R.},
TITLE = {LGANN: A parallel system combining a local genetic algorithm and neural networks for the prediction of secondary structure of proteins},
JOURNAL = {Bioinformatics},
VOLUME = {11},
NUMBER = {3},
PAGES = {253-260},
YEAR = {1995},
URL = {http://bioinformatics.oxfordjournals.org/cgi/content/abstract/11/3/253},
PUBLISHER = {Oxford University Press},
}
@article{Cantalloube-Labesse-Chomilier-Nahum-Cho-Chams-Achour-Lachgar-Mbika-Issing/95,
AUTHOR = {Cantalloube, H. and Labesse, G. and Chomilier, J. and Nahum, C. and Cho, Y.Y. and Chams, V. and Achour, A. and Lachgar, A. and Mbika, J.P. and Issing, W.},
TITLE = {Automat and BLAST: Comparison of two protein sequence similarity search programs},
JOURNAL = {Bioinformatics},
VOLUME = {11},
NUMBER = {3},
PAGES = {261-272},
YEAR = {1995},
URL = {http://bioinformatics.oxfordjournals.org/cgi/content/abstract/11/3/261},
PUBLISHER = {Oxford University Press},
}
@article{Fondrat-Dessen/95,
AUTHOR = {Fondrat, C. and Dessen, P.},
TITLE = {A rapid access motif database (RAMdb) with a search algorithm for the retrieval patterns in nucleic acids or protein databanks},
JOURNAL = {Bioinformatics},
VOLUME = {11},
NUMBER = {3},
PAGES = {273-279},
YEAR = {1995},
URL = {http://bioinformatics.oxfordjournals.org/cgi/content/abstract/11/3/273},
PUBLISHER = {Oxford University Press},
}
@article{Bansal-Bhattacharyya-Ravi/95,
AUTHOR = {Bansal, M. and Bhattacharyya, D. and Ravi, B.},
TITLE = {NUPARM and NUCGEN: Software for analysis and generation of sequence dependent nucleic acid structures},
JOURNAL = {Bioinformatics},
VOLUME = {11},
NUMBER = {3},
PAGES = {281-287},
YEAR = {1995},
URL = {http://bioinformatics.oxfordjournals.org/cgi/content/abstract/11/3/281},
PUBLISHER = {Oxford University Press},
}
@article{Bansal-Bhattacharyya-Vijaylakshmi/95,
AUTHOR = {Bansal, M. and Bhattacharyya, D. and Vijaylakshmi, S.},
TITLE = {NUVIEW: Software for display and interactive manipulation of nucleic acid models},
JOURNAL = {Bioinformatics},
VOLUME = {11},
NUMBER = {3},
PAGES = {289-292},
YEAR = {1995},
URL = {http://bioinformatics.oxfordjournals.org/cgi/content/abstract/11/3/289},
PUBLISHER = {Oxford University Press},
}
@article{Nair-Tambe-Kulkarni/95,
AUTHOR = {Nair, T.M. and Tambe, S.S. and Kulkarni, B.D.},
TITLE = {Analysis of transcription control signals using artificial neural networks},
JOURNAL = {Bioinformatics},
VOLUME = {11},
NUMBER = {3},
PAGES = {293-300},
YEAR = {1995},
URL = {http://bioinformatics.oxfordjournals.org/cgi/content/abstract/11/3/293},
PUBLISHER = {Oxford University Press},
}
@article{Trelles-Salazar-Zapata-Dopazo-Coulson-Carazo/95,
AUTHOR = {Trelles-Salazar, O. and Zapata, E.L. and Dopazo, J. and Coulson, A.F. and Carazo, J.M.},
TITLE = {An image-processing approach to dotplots: An X-Window-based program for interactive analysis of dotplots derived from sequence and structural data},
JOURNAL = {Bioinformatics},
VOLUME = {11},
NUMBER = {3},
PAGES = {301-308},
YEAR = {1995},
URL = {http://bioinformatics.oxfordjournals.org/cgi/content/abstract/11/3/301},
PUBLISHER = {Oxford University Press},
}
@article{Reczko-Hatzigeorgiou-Mache-Zell-Suhai/95,
AUTHOR = {Reczko, M. and Hatzigeorgiou, A. and Mache, N. and Zell, A. and Suhai, S.},
TITLE = {A parallel neural network simulator on the connection machine CM-5},
JOURNAL = {Bioinformatics},
VOLUME = {11},
NUMBER = {3},
PAGES = {309-315},
YEAR = {1995},
URL = {http://bioinformatics.oxfordjournals.org/cgi/content/abstract/11/3/309},
PUBLISHER = {Oxford University Press},
}
@article{Singh-Krawetz/95,
AUTHOR = {Singh, G.B. and Krawetz, S.A.},
TITLE = {DNAView: A quality assessment tool for the visualization of large sequenced regions},
JOURNAL = {Bioinformatics},
VOLUME = {11},
NUMBER = {3},
PAGES = {317-319},
YEAR = {1995},
URL = {http://bioinformatics.oxfordjournals.org/cgi/content/abstract/11/3/317},
PUBLISHER = {Oxford University Press},
}
@article{Thioulouse-Lobry/95,
AUTHOR = {Thioulouse, J. and Lobry, J.R.},
TITLE = {Co-inertia analysis of amino-acid physico-chemical properties and protein composition with the ADE package},
JOURNAL = {Bioinformatics},
VOLUME = {11},
NUMBER = {3},
PAGES = {321-329},
YEAR = {1995},
URL = {http://bioinformatics.oxfordjournals.org/cgi/content/abstract/11/3/321},
PUBLISHER = {Oxford University Press},
}
@article{Mironov-Alexandrov-Bogodarova-Grigorjev-Lebedev-Lunovskaya-Truchan-Pevzner/95,
AUTHOR = {Mironov, A.A. and Alexandrov, N.N. and Bogodarova, N.Yu. and Grigorjev, A. and Lebedev, V.F. and Lunovskaya, L.V. and Truchan, M.E. and Pevzner, P.A.},
TITLE = {DNASUN: A package of computer programs for the biotechnology laboratory},
JOURNAL = {Bioinformatics},
VOLUME = {11},
NUMBER = {3},
PAGES = {331-335},
YEAR = {1995},
URL = {http://bioinformatics.oxfordjournals.org/cgi/content/abstract/11/3/331},
PUBLISHER = {Oxford University Press},
}
@article{Schweigert-Herde-Sibbald/95,
AUTHOR = {Schweigert, S. and Herde, P.V. and Sibbald, P.R.},
TITLE = {Issues in incorporation semantic integrity in molecular biological object-oriented databases},
JOURNAL = {Bioinformatics},
VOLUME = {11},
NUMBER = {4},
PAGES = {339-347},
YEAR = {1995},
URL = {http://bioinformatics.oxfordjournals.org/cgi/content/abstract/11/4/339},
PUBLISHER = {Oxford University Press},
}
@article{Sirajuddin-Nagashima-Ono/95,
AUTHOR = {Sirajuddin, K. and Nagashima, T. and Ono, K.},
TITLE = {A new algorithm for predicting splice site sequence based on an improvement of categorical discriminant analysis},
JOURNAL = {Bioinformatics},
VOLUME = {11},
NUMBER = {4},
PAGES = {349-359},
YEAR = {1995},
URL = {http://bioinformatics.oxfordjournals.org/cgi/content/abstract/11/4/349},
PUBLISHER = {Oxford University Press},
}
@article{Humphries-Long/95,
AUTHOR = {Humphries, S.W. and Long, S.P.},
TITLE = {WIMOVAC: A software package for modelling the dynamics of plant leaf and canopy photosynthesis},
JOURNAL = {Bioinformatics},
VOLUME = {11},
NUMBER = {4},
PAGES = {361-371},
YEAR = {1995},
URL = {http://bioinformatics.oxfordjournals.org/cgi/content/abstract/11/4/361},
PUBLISHER = {Oxford University Press},
}
@article{Lanzavecchia-Tosoni-Bellon/95,
AUTHOR = {Lanzavecchia, S. and Tosoni, L. and Bellon, P.L.},
TITLE = {Three-dimensional reconstruction of helical structures with fast inversion of very large Fourier transforms},
JOURNAL = {Bioinformatics},
VOLUME = {11},
NUMBER = {4},
PAGES = {373-378},
YEAR = {1995},
URL = {http://bioinformatics.oxfordjournals.org/cgi/content/abstract/11/4/373},
PUBLISHER = {Oxford University Press},
}
@article{Fraenkel-Mandel-Friedberg-Margalit/95,
AUTHOR = {Fraenkel, Y.M. and Mandel, Y. and Friedberg, D. and Margalit, H.},
TITLE = {Identification of common motifs in unaligned DNA sequences: Application to Escherichia coli Lrp regulon},
JOURNAL = {Bioinformatics},
VOLUME = {11},
NUMBER = {4},
PAGES = {379-387},
YEAR = {1995},
URL = {http://bioinformatics.oxfordjournals.org/cgi/content/abstract/11/4/379},
PUBLISHER = {Oxford University Press},
}
@article{Chen-Lucas-Hill-Brenner-Sachs/95,
AUTHOR = {Chen, A.M. and Lucas, J.N. and Hill, F.S. and Brenner, D.J. and Sachs, R.K.},
TITLE = {Chromosome aberrations produced by ionizing radiation: Monte Carlo simulations and chromosome painting data},
JOURNAL = {Bioinformatics},
VOLUME = {11},
NUMBER = {4},
PAGES = {389-397},
YEAR = {1995},
URL = {http://bioinformatics.oxfordjournals.org/cgi/content/abstract/11/4/389},
PUBLISHER = {Oxford University Press},
}
@article{Mamitsuka-Yamanishi/95,
AUTHOR = {Mamitsuka, H. and Yamanishi, K.},
TITLE = {Alpha-Helix region prediction with stochastic rule learning},
JOURNAL = {Bioinformatics},
VOLUME = {11},
NUMBER = {4},
PAGES = {399-411},
YEAR = {1995},
URL = {http://bioinformatics.oxfordjournals.org/cgi/content/abstract/11/4/399},
PUBLISHER = {Oxford University Press},
}
@article{Mamitsuka/95,
AUTHOR = {Mamitsuka, H.},
TITLE = {Representing inter-residue dependencies in protein sequences with probabilistic networks},
JOURNAL = {Bioinformatics},
VOLUME = {11},
NUMBER = {4},
PAGES = {413-422},
YEAR = {1995},
URL = {http://bioinformatics.oxfordjournals.org/cgi/content/abstract/11/4/413},
PUBLISHER = {Oxford University Press},
}
@article{Nazipova-Shabalina-Ogurtsov-Kondrashov-Roytberg-Buryakov-Vernoslov/95,
AUTHOR = {Nazipova, N.N. and Shabalina, S.A. and Ogurtsov, A.Yu. and Kondrashov, A.S. and Roytberg, M.A. and Buryakov, G.V. and Vernoslov, S.E.},
TITLE = {SAMSON: A software package for the biopolymer primary structure analysis},
JOURNAL = {Bioinformatics},
VOLUME = {11},
NUMBER = {4},
PAGES = {423-426},
YEAR = {1995},
URL = {http://bioinformatics.oxfordjournals.org/cgi/content/abstract/11/4/423},
PUBLISHER = {Oxford University Press},
}
@article{Fernandez-de-Cossio-Gonzalez-Besada/95,
AUTHOR = {Fernandez-de-Cossio, J. and Gonzalez, J. and Besada, V.},
TITLE = {A computer program to aid the sequencing of peptides in collision-activated decomposition experiments},
JOURNAL = {Bioinformatics},
VOLUME = {11},
NUMBER = {4},
PAGES = {427-434},
YEAR = {1995},
URL = {http://bioinformatics.oxfordjournals.org/cgi/content/abstract/11/4/427},
PUBLISHER = {Oxford University Press},
}
@article{Deret-Maissiat-Aucouturier-Chomilier/95,
AUTHOR = {Deret, S. and Maissiat, C. and Aucouturier, P. and Chomilier, J.},
TITLE = {SUBIM: A program for analysing the Kabat database and determining the variability subgroup of a new immunoglobulin sequence},
JOURNAL = {Bioinformatics},
VOLUME = {11},
NUMBER = {4},
PAGES = {435-439},
YEAR = {1995},
URL = {http://bioinformatics.oxfordjournals.org/cgi/content/abstract/11/4/435},
PUBLISHER = {Oxford University Press},
}
@article{Claros/95,
AUTHOR = {Claros, M.G.},
TITLE = {MitoProt, a Macintosh application for studying mitochondrial proteins},
JOURNAL = {Bioinformatics},
VOLUME = {11},
NUMBER = {4},
PAGES = {441-447},
YEAR = {1995},
URL = {http://bioinformatics.oxfordjournals.org/cgi/content/abstract/11/4/441},
PUBLISHER = {Oxford University Press},
}
@article{Kleffe-Hermann-Gunia-Vahrson-Wittig/95,
AUTHOR = {Kleffe, J. and Hermann, K. and Gunia, W. and Vahrson, W. and Wittig, B.},
TITLE = {DNASTAT: A Pascal unit for the statistical analysis of DNA and protein sequences},
JOURNAL = {Bioinformatics},
VOLUME = {11},
NUMBER = {4},
PAGES = {449-455},
YEAR = {1995},
URL = {http://bioinformatics.oxfordjournals.org/cgi/content/abstract/11/4/449},
PUBLISHER = {Oxford University Press},
}
@article{Ermolaeva-Wagner/95,
AUTHOR = {Ermolaeva, O.D. and Wagner, M.C.},
TITLE = {SUBSTRACT: A computer program for modeling the process of subtractive hydridization},
JOURNAL = {Bioinformatics},
VOLUME = {11},
NUMBER = {4},
PAGES = {457-462},
YEAR = {1995},
URL = {http://bioinformatics.oxfordjournals.org/cgi/content/abstract/11/4/457},
PUBLISHER = {Oxford University Press},
}
@article{Drets-Drets-Queirolo-Monteverde/95,
AUTHOR = {Drets, M.E. and Drets, G.A. and Queirolo, P.J. and Monteverde, F.J.},
TITLE = {Computer graphics as a tool in cytogenetic research and education},
JOURNAL = {Bioinformatics},
VOLUME = {11},
NUMBER = {5},
PAGES = {463-468},
YEAR = {1995},
URL = {http://bioinformatics.oxfordjournals.org/cgi/content/abstract/11/5/463},
PUBLISHER = {Oxford University Press},
}
@article{Fournet-Hospital-Elsen/95,
AUTHOR = {Fournet, F. and Hospital, F. and Elsen, J.M.},
TITLE = {A FORTRAN program to simulate the evolution of genetic variability in a small population},
JOURNAL = {Bioinformatics},
VOLUME = {11},
NUMBER = {5},
PAGES = {469-475},
YEAR = {1995},
URL = {http://bioinformatics.oxfordjournals.org/cgi/content/abstract/11/5/469},
PUBLISHER = {Oxford University Press},
}
@article{Kondrakhin-Kel-Kolchanov-Romashchenko-Milanesi/95,
AUTHOR = {Kondrakhin, Y.V. and Kel, A.E. and Kolchanov, N.A. and Romashchenko, A.G. and Milanesi, L.},
TITLE = {Eukaryotic promoter recognition by binding sites for transcription factors},
JOURNAL = {Bioinformatics},
VOLUME = {11},
NUMBER = {5},
PAGES = {477-488},
YEAR = {1995},
URL = {http://bioinformatics.oxfordjournals.org/cgi/content/abstract/11/5/477},
PUBLISHER = {Oxford University Press},
}
@article{Audic-Zanetti/95,
AUTHOR = {Audic, S. and Zanetti, G.},
TITLE = {Automatic reading of hybridization filter images},
JOURNAL = {Bioinformatics},
VOLUME = {11},
NUMBER = {5},
PAGES = {489-495},
YEAR = {1995},
URL = {http://bioinformatics.oxfordjournals.org/cgi/content/abstract/11/5/489},
PUBLISHER = {Oxford University Press},
}
@article{Cai-Chen/95,
AUTHOR = {Cai, Y. and Chen, C.},
TITLE = {Artificial neural network method for discriminating coding regions of eukaryotic genes},
JOURNAL = {Bioinformatics},
VOLUME = {11},
NUMBER = {5},
PAGES = {497-501},
YEAR = {1995},
URL = {http://bioinformatics.oxfordjournals.org/cgi/content/abstract/11/5/497},
PUBLISHER = {Oxford University Press},
}
@article{Leong-Morgenthaler/95,
AUTHOR = {Leong, P.M. and Morgenthaler, S.},
TITLE = {Random walk and gap plots of DNA sequences},
JOURNAL = {Bioinformatics},
VOLUME = {11},
NUMBER = {5},
PAGES = {503-507},
YEAR = {1995},
URL = {http://bioinformatics.oxfordjournals.org/cgi/content/abstract/11/5/503},
PUBLISHER = {Oxford University Press},
}
@article{Stoltzfus-Spencer-Doolittle/95,
AUTHOR = {Stoltzfus, A. and Spencer, D.F. and Doolittle, W.F.},
TITLE = {Methods for evaluating exon-protein correspondences},
JOURNAL = {Bioinformatics},
VOLUME = {11},
NUMBER = {5},
PAGES = {509-515},
YEAR = {1995},
URL = {http://bioinformatics.oxfordjournals.org/cgi/content/abstract/11/5/509},
PUBLISHER = {Oxford University Press},
}
@article{Wiechert-Joksch-Wittig-Hartbrich-Honer-Mollney/95,
AUTHOR = {Wiechert, W. and Joksch, B. and Wittig, R. and Hartbrich, A. and Honer, T. and Mollney, M.},
TITLE = {Object-oriented programming for the biosciences},
JOURNAL = {Bioinformatics},
VOLUME = {11},
NUMBER = {5},
PAGES = {517-534},
YEAR = {1995},
URL = {http://bioinformatics.oxfordjournals.org/cgi/content/abstract/11/5/517},
PUBLISHER = {Oxford University Press},
}
@article{Weiller-Gibbs/95,
AUTHOR = {Weiller, G.F. and Gibbs, A.},
TITLE = {DIPLOMO: The tool for a new type of evolutionary analysis},
JOURNAL = {Bioinformatics},
VOLUME = {11},
NUMBER = {5},
PAGES = {535-540},
YEAR = {1995},
URL = {http://bioinformatics.oxfordjournals.org/cgi/content/abstract/11/5/535},
PUBLISHER = {Oxford University Press},
}
@article{Gelfand/95,
AUTHOR = {Gelfand, M.S.},
TITLE = {FANS-REF: A bibliography on statistics and functional analysis of nucleotide sequences},
JOURNAL = {Bioinformatics},
VOLUME = {11},
NUMBER = {5},
PAGES = {541-541},
YEAR = {1995},
URL = {http://bioinformatics.oxfordjournals.org/cgi/content/abstract/11/5/541},
PUBLISHER = {Oxford University Press},
}
@article{Gotoh/95,
AUTHOR = {Gotoh, O.},
TITLE = {A weighting system and algorithm for aligning many phylogenetically related sequences},
JOURNAL = {Bioinformatics},
VOLUME = {11},
NUMBER = {5},
PAGES = {543-551},
YEAR = {1995},
URL = {http://bioinformatics.oxfordjournals.org/cgi/content/abstract/11/5/543},
PUBLISHER = {Oxford University Press},
}
@article{Nitschke-Pignot-Paintrand-Iftode-Delacroix/95,
AUTHOR = {Nitschke, P. and Pignot-Paintrand, I. and Iftode, F. and Delacroix, H.},
TITLE = {DEFPARAM: A program package for aligning elliptical sections of biological objects containing an $n$-fold symmetry},
JOURNAL = {Bioinformatics},
VOLUME = {11},
NUMBER = {5},
PAGES = {553-556},
YEAR = {1995},
URL = {http://bioinformatics.oxfordjournals.org/cgi/content/abstract/11/5/553},
PUBLISHER = {Oxford University Press},
}
@article{Strelets-Lim/95,
AUTHOR = {Strelets, V.B. and Lim, H.A.},
TITLE = {Compression of protein sequence databases},
JOURNAL = {Bioinformatics},
VOLUME = {11},
NUMBER = {5},
PAGES = {557-561},
YEAR = {1995},
URL = {http://bioinformatics.oxfordjournals.org/cgi/content/abstract/11/5/557},
PUBLISHER = {Oxford University Press},
}
@article{Chen-Hertz-Stormo/95,
AUTHOR = {Chen, Q.K. and Hertz, G.Z. and Stormo, G.D.},
TITLE = {MATRIX SEARCH 1.0: A computer program that scans DNA sequences for transcriptional elements using a database of weight matrices},
JOURNAL = {Bioinformatics},
VOLUME = {11},
NUMBER = {5},
PAGES = {563-566},
YEAR = {1995},
URL = {http://bioinformatics.oxfordjournals.org/cgi/content/abstract/11/5/563},
PUBLISHER = {Oxford University Press},
}
@article{MacDonaill/95,
AUTHOR = {MacD{\'o}naill, D.A.},
TITLE = {On the application of integer arithmetic in nucleotide sequence analysis},
JOURNAL = {Bioinformatics},
VOLUME = {11},
NUMBER = {5},
PAGES = {567-569},
YEAR = {1995},
URL = {http://bioinformatics.oxfordjournals.org/cgi/content/abstract/11/5/567},
PUBLISHER = {Oxford University Press},
}
@article{Sayle-Saqi-Weir-Lyall/95,
AUTHOR = {Sayle, R. and Saqi, M. and Weir, M. and Lyall, A.},
TITLE = {PdbAlign, PdbDist and DistAlign: Tools to aid in relating sequence variability to structure},
JOURNAL = {Bioinformatics},
VOLUME = {11},
NUMBER = {5},
PAGES = {571-573},
YEAR = {1995},
URL = {http://bioinformatics.oxfordjournals.org/cgi/content/abstract/11/5/571},
PUBLISHER = {Oxford University Press},
}
@article{Bordo/95,
AUTHOR = {Bordo, D.},
TITLE = {Comparison of side chain interactions performed by structurally equivalent residues in homologous protein structures},
JOURNAL = {Bioinformatics},
VOLUME = {11},
NUMBER = {6},
PAGES = {577-581},
YEAR = {1995},
URL = {http://bioinformatics.oxfordjournals.org/cgi/content/abstract/11/6/577},
PUBLISHER = {Oxford University Press},
}
@article{Ptitsyn-Grigorovich/95,
AUTHOR = {Ptitsyn, A.A. and Grigorovich, D.A.},
TITLE = {Object-oriented data handler for sequence analysis software development},
JOURNAL = {Bioinformatics},
VOLUME = {11},
NUMBER = {6},
PAGES = {583-589},
YEAR = {1995},
URL = {http://bioinformatics.oxfordjournals.org/cgi/content/abstract/11/6/583},
PUBLISHER = {Oxford University Press},
}
@article{Sudarsanam-Srinivasan/95,
AUTHOR = {Sudarsanam, S. and Srinivasan, S.},
TITLE = {Searching for protein loops in parallel},
JOURNAL = {Bioinformatics},
VOLUME = {11},
NUMBER = {6},
PAGES = {591-593},
YEAR = {1995},
URL = {http://bioinformatics.oxfordjournals.org/cgi/content/abstract/11/6/591},
PUBLISHER = {Oxford University Press},
}
@article{Brown/95,
AUTHOR = {Brown, D.J.},
TITLE = {A qualitative ecological model to support mariculture pond water quality management},
JOURNAL = {Bioinformatics},
VOLUME = {11},
NUMBER = {6},
PAGES = {595-602},
YEAR = {1995},
URL = {http://bioinformatics.oxfordjournals.org/cgi/content/abstract/11/6/595},
PUBLISHER = {Oxford University Press},
}
@article{Parsons/95,
AUTHOR = {Parsons, J.D.},
TITLE = {Improved tools for DNA comparison and clustering},
JOURNAL = {Bioinformatics},
VOLUME = {11},
NUMBER = {6},
PAGES = {603-613},
YEAR = {1995},
URL = {http://bioinformatics.oxfordjournals.org/cgi/content/abstract/11/6/603},
PUBLISHER = {Oxford University Press},
}
@article{Parsons/95a,
AUTHOR = {Parsons, J.D.},
TITLE = {Miropeats: Graphical DNA sequence comparisons},
JOURNAL = {Bioinformatics},
VOLUME = {11},
NUMBER = {6},
PAGES = {615-619},
YEAR = {1995},
URL = {http://bioinformatics.oxfordjournals.org/cgi/content/abstract/11/6/615},
PUBLISHER = {Oxford University Press},
}
@article{Rozas-Rozas/95,
AUTHOR = {Rozas, J. and Rozas, R.},
TITLE = {DnaSP, DNA sequence polymorphism: An interactive program for estimating population genetics parameters from DNA sequence data},
JOURNAL = {Bioinformatics},
VOLUME = {11},
NUMBER = {6},
PAGES = {621-625},
YEAR = {1995},
URL = {http://bioinformatics.oxfordjournals.org/cgi/content/abstract/11/6/621},
PUBLISHER = {Oxford University Press},
}
@article{Tuckwell-Humphries-Brass/95,
AUTHOR = {Tuckwell, D.S. and Humphries, M.J. and Brass, A.},
TITLE = {Protein secondary structure prediction by the analysis of variation and conservation in multiple alignments},
JOURNAL = {Bioinformatics},
VOLUME = {11},
NUMBER = {6},
PAGES = {627-632},
YEAR = {1995},
URL = {http://bioinformatics.oxfordjournals.org/cgi/content/abstract/11/6/627},
PUBLISHER = {Oxford University Press},
}
@article{Gerstein-Altman/95,
AUTHOR = {Gerstein, M. and Altman, R.B.},
TITLE = {Using a measure of structural variation to define a core for the globins},
JOURNAL = {Bioinformatics},
VOLUME = {11},
NUMBER = {6},
PAGES = {633-644},
YEAR = {1995},
URL = {http://bioinformatics.oxfordjournals.org/cgi/content/abstract/11/6/633},
PUBLISHER = {Oxford University Press},
}
@article{Soderlund-Dunham/95,
AUTHOR = {Soderlund, C. and Dunham, I.},
TITLE = {SAM: A system for iteratively building marker maps},
JOURNAL = {Bioinformatics},
VOLUME = {11},
NUMBER = {6},
PAGES = {645-655},
YEAR = {1995},
URL = {http://bioinformatics.oxfordjournals.org/cgi/content/abstract/11/6/645},
PUBLISHER = {Oxford University Press},
}
@article{Courtois-Moncany/95,
AUTHOR = {Courtois, P.R. and Moncany, M.L.},
TITLE = {A probabilistic algorithm for interactive huge genome comparison},
JOURNAL = {Bioinformatics},
VOLUME = {11},
NUMBER = {6},
PAGES = {657-665},
YEAR = {1995},
URL = {http://bioinformatics.oxfordjournals.org/cgi/content/abstract/11/6/657},
PUBLISHER = {Oxford University Press},
}
@article{Blevins-Aaronson-Myerson-Hamm-Elliston/95,
AUTHOR = {Blevins, R. and Aaronson, J. and Myerson, J. and Hamm, G. and Elliston, K.},
TITLE = {PROFILER: A tool for automatic searching of internally maintained databases},
JOURNAL = {Bioinformatics},
VOLUME = {11},
NUMBER = {6},
PAGES = {667-673},
YEAR = {1995},
URL = {http://bioinformatics.oxfordjournals.org/cgi/content/abstract/11/6/667},
PUBLISHER = {Oxford University Press},
}
@article{Hoffman-Laiter-Singh-Vaisman-Tropsha/95,
AUTHOR = {Hoffman, D.L. and Laiter, S. and Singh, R.K. and Vaisman, I.I. and Tropsha, A.},
TITLE = {Rapid protein structure classification using one-dimensional structure profiles on the bioSCAN parallel computer},
JOURNAL = {Bioinformatics},
VOLUME = {11},
NUMBER = {6},
PAGES = {675-679},
YEAR = {1995},
URL = {http://bioinformatics.oxfordjournals.org/cgi/content/abstract/11/6/675},
PUBLISHER = {Oxford University Press},
}
@article{Geourjon-Deleage/95,
AUTHOR = {Geourjon, C. and Deleage, G.},
TITLE = {SOPMA: Significant improvements in protein secondary structure prediction by consensus prediction from multiple alignments},
JOURNAL = {Bioinformatics},
VOLUME = {11},
NUMBER = {6},
PAGES = {681-684},
YEAR = {1995},
URL = {http://bioinformatics.oxfordjournals.org/cgi/content/abstract/11/6/681},
PUBLISHER = {Oxford University Press},
}
@article{Nakaya-Yamamoto-Yonezawa/95,
AUTHOR = {Nakaya, A. and Yamamoto, K. and Yonezawa, A.},
TITLE = {RNA secondary structure prediction using highly parallel computers},
JOURNAL = {Bioinformatics},
VOLUME = {11},
NUMBER = {6},
PAGES = {685-692},
YEAR = {1995},
URL = {http://bioinformatics.oxfordjournals.org/cgi/content/abstract/11/6/685},
PUBLISHER = {Oxford University Press},
}