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Technische Universität München
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Identifying multi-layer gene regulatory modules from multi-dimensional genomic data
Wenyuan Li
,
Shihua Zhang
,
Chun-Chi Liu
,
Xianghong Jasmine Zhou
Bioinformatics
28
(19), 2012, pp. 2458-2466
A novel computational framework for simultaneous integration of multiple types of genomic data to identify microRNA-gene regulatory modules
Shihua Zhang
,
Qingjiao Li
,
Juan Liu
,
Xianghong Jasmine Zhou
Bioinformatics
27
(13), 2011, pp. 401-409
An integrative network approach to map the transcriptome to the phenome
Michael R. Mehan
,
Juan Nunez-Iglesias
,
Mrinal Kalakrishnan
,
Michael S. Waterman
,
Xianghong Jasmine Zhou
LNCS/LNBI
4955
, 2008, pp. 232-245
Systematic discovery of functional modules and context-specific functional annotation of human genome
Yu Huang
,
Haifeng Li
,
Haiyan Hu
,
Xifeng Yan
,
Michael S. Waterman
,
Haiyan Huang
,
Xianghong Jasmine Zhou
Bioinformatics
23
(13), 2007, pp. 222-229
A graph-based approach to systematically reconstruct human transcriptional regulatory modules
Xifeng Yan
,
Michael R. Mehan
,
Yu Huang
,
Michael S. Waterman
,
Philip S. Yu
,
Xianghong Jasmine Zhou
Bioinformatics
23
(13), 2007, pp. 577-586
Integrative Array Analyzer: A software package for analysis of cross-platform and cross-species microarray data
Fei Pan
,
Kiran Kamath
,
Kangyu Zhang
,
Sudip Pulapura
,
Avinash Achar
,
Juan Nunez-Iglesias
,
Yu Huang
,
Xifeng Yan
,
Jiawei Han
,
Haiyan Hu
,
Min Xu
,
Jianjun Hu
,
Xianghong Jasmine Zhou
Bioinformatics
22
(13), 2006, pp. 1665-1667
Mining coherent dense subgraphs across massive biological networks for functional discovery
Haiyan Hu
,
Xifeng Yan
,
Yu Huang
,
Jiawei Han
,
Xianghong Jasmine Zhou
Bioinformatics
21
(S1), 2005, pp. 213-221