Fakultät für Informatik
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Technische Universität München
Lehrstuhl für Effiziente Algorithmen
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Mosaic: Making biological sense of complex networks
Chao Zhang
,
Kristina Hanspers
,
Allan Kuchinsky
,
Nathan Salomonis
,
Dong Xu
,
Alexander R. Pico
Bioinformatics
28
(14), 2012, pp. 1943-1944
PRIMEGENS-v2: Genome-wide primer design for analyzing DNA methylation patterns of CpG islands
Gyan P. Srivastava
,
Juyuan Guo
,
Huidong Shi
,
Dong Xu
Bioinformatics
24
(17), 2008, pp. 1837-1842
Portable virtual cycle accounting for large-scale distributed cycle sharing systems
Hiroshi Yamauchi
,
Dongyan Xu
Parallel Computing
33
(4-5), 2007, pp. 314-327
Collapsar: A VM-based honeyfarm and reverse honeyfarm architecture for network attack capture and detention
Xuxian Jiang
,
Dongyan Xu
,
Yi-Min Wang
Journal Parallel Distributed Computing
66
(9), 2006, pp. 1165-1180
Inferring gene regulatory networks from multiple microarray datasets
Yong Wang
,
Trupti Joshi
,
Xiang-Sun Zhang
,
Dong Xu
,
Luonan Chen
Bioinformatics
22
(19), 2006, pp. 2413-2420
Understanding protein dispensability through machine-learning analysis of high-throughput data
Yu Chen
,
Dong Xu
Bioinformatics
21
(5), 2005, pp. 575-581
GeneContent: Software for whole-genome phylogenetic analysis
Xun Gu
,
Wei Huang
,
Dongping Xu
,
Hongmei Zhang
Bioinformatics
21
(8), 2005, pp. 1713-1714
More reliable protein NMR peak assignment via improved 2-interval scheduling
Zhi-Zhong Chen
,
Tao Jiang
,
Guohui Lin
,
Romeo Rizzi
,
Jianjun Wen
,
Dong Xu
,
Ying Xu
Lecture Notes in Computer Science
2832
, 2003, pp. 580-592
Approximation algorithms for NMR spectral peak assignment
Zhi-Zhong Chen
,
Tao Jiang
,
Guohui Lin
,
Jianjun Wen
,
Dong Xu
,
Jinbo Xu
,
Ying Xu
Theoretical Computer Science
299
(1-3), 2003, pp. 211-229
A computational pipeline for protein structure prediction and analysis at genome scale
Manesh Shah
,
Sergei Passovets
,
Dongsup Kim
,
Kyle Ellrott
,
Li Wang
,
Inna Vokler
,
Philip LoCascio
,
Dong Xu
,
Ying Xu
Bioinformatics
19
(15), 2003, pp. 1985-1996
PRIMEGENS: Robust and efficient design of gene-specific probes for microarray analysis
Dong Xu
,
Guangshan Li
,
Liyou Wu
,
Jizhong Zhou
,
Ying Xu
Bioinformatics
18
(11), 2002, pp. 1432-1437
Clustering gene expression data using a graph-theoretic approach: An application of minimum spanning trees
Ying Xu
,
Victor Olman
,
Dong Xu
Bioinformatics
18
(4), 2002, pp. 536-545
Protein structure prediction by protein threading and partial experimental data
Ying Xu
,
Dong Xu
Computational Molecular Biology
, 2002, pp. 467-502
Protein structure prediction by protein threading and partial experimental data
Ying Xu
,
Dong Xu
Computer Molecular Biology
, 2002, pp. 467-502
Sequence-structure specificity of a knowledge based energy function at the secondary structure level
Dong Xu
,
Michael A. Unseren
,
Ying Xu
,
Edward C. Uberbacher
Bioinformatics
16
(3), 2000, pp. 257-268
Protein structure determination using protein threading and sparse NMR data
Ying Xu
,
Dong Xu
,
Oakley H. Crawford
,
J. Ralph Einstein
,
Engin Serpersu
Proceedings of the 4th Annual International Conference on Computational Molecular Biology, RECOMB'2000 (Tokyo, Japan, April 8-11, 2000)
, 2000, pp. 299-307
Protein domain decomposition using a graph-theoretic approach
Ying Xu
,
Dong Xu
,
Harold N. Gabow
Bioinformatics
16
(12), 2000, pp. 1091-1104
A new method for modeling and solving the protein fold recognition problem
Ying Xu
,
Dong Xu
,
Edward C. Uberbacher
Proceedings of the 2nd Annual International Conference on Computational Molecular Biology, RECOMB'98 (New York, New York, March 22-25, 1998)
, 1998, pp. 285-292