Fakultät für Informatik
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Technische Universität München
Lehrstuhl für Effiziente Algorithmen
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HAPLOWSER: A whole-genome haplotype browser for personal genome and metagenome
Jong Hyun Kim
,
Woo-Cheol Kim
,
Michael S. Waterman
,
Sanghyun Park
,
Lei M. Li
Bioinformatics
25
(18), 2009, pp. 2430-2431
An integrative network approach to map the transcriptome to the phenome
Michael R. Mehan
,
Juan Nunez-Iglesias
,
Mrinal Kalakrishnan
,
Michael S. Waterman
,
Xianghong Jasmine Zhou
LNCS/LNBI
4955
, 2008, pp. 232-245
Systematic discovery of functional modules and context-specific functional annotation of human genome
Yu Huang
,
Haifeng Li
,
Haiyan Hu
,
Xifeng Yan
,
Michael S. Waterman
,
Haiyan Huang
,
Xianghong Jasmine Zhou
Bioinformatics
23
(13), 2007, pp. 222-229
A graph-based approach to systematically reconstruct human transcriptional regulatory modules
Xifeng Yan
,
Michael R. Mehan
,
Yu Huang
,
Michael S. Waterman
,
Philip S. Yu
,
Xianghong Jasmine Zhou
Bioinformatics
23
(13), 2007, pp. 577-586
Refinement of optical map assemblies
Anton Valouev
,
Yu Zhang
,
David C. Schwartz
,
Michael S. Waterman
Bioinformatics
22
(10), 2006, pp. 1217-1224
Stan Ulam and computational biology
Michael S. Waterman
LNCS/LNBI
3909
, 2006, pp. 159-159
Alignment of optical maps
Anton Valouev
,
Lei Li
,
Yu-Chi Liu
,
David C. Schwartz
,
Yi Yang
,
Yu Zhang
,
Michael S. Waterman
LNCS/LNBI
3500
, 2005, pp. 489-504
HapBlock: Haplotype block partitioning and tag SNP selection software using a set of dynamic programming algorithms
Kui Zhang
,
Zhaohui Qin
,
Ting Chen
,
Jun S. Liu
,
Michael S. Waterman
,
Fengzhu Sun
Bioinformatics
21
(1), 2005, pp. 131-134
Dynamic programming algorithms for haplotype block partitioning and tag SNP selection using haplotype data or genotype data
Kui Zhang
,
Ting Chen
,
Michael S. Waterman
,
Zhaohui S. Qin
,
Jun S. Liu
,
Fengzhu Sun
LNCS/LNBI
2983
, 2004, pp. 96-112
Haplotype reconstruction from SNP alignment
Lei Li
,
Jong Hyun Kim
,
Michael S. Waterman
Proceedings of the 7th Annual International Conference on Research in Computational Molecular Biology, RECOMB'2003 (Berlin, Germany, April 10-13, 2003)
, 2003, pp. 207-216
Dynamic programming algorithms for haplotype block partitioning: Applications to human chromosome 21 haplotype data
Kui Zhang
,
Fengzhu Sun
,
Michael S. Waterman
,
Ting Chen
Proceedings of the 7th Annual International Conference on Research in Computational Molecular Biology, RECOMB'2003 (Berlin, Germany, April 10-13, 2003)
, 2003, pp. 332-340
Estimation for restriction sites observed by optical mapping using reversible-jump Markov chain Monte Carlo
Jae K. Lee
,
Vlado Danc̑ík
,
Michael S. Waterman
Proceedings of the 2nd Annual International Conference on Computational Molecular Biology, RECOMB'98 (New York, New York, March 22-25, 1998)
, 1998, pp. 147-152
Chimeric alignment by dynamic programming: Algorithm and biological uses
George A. Komatsoulis
,
Michael S. Waterman
Proceedings of the 1st Annual International Conference on Computational Molecular Biology, RECOMB'97 (Santa Fe, New Mexico, January 20-23, 1997)
, 1997, pp. 174-180
Pooling strategies for establishing physical genome maps using FISH
Fengzhu Sun
,
Gary Benson
,
Norman Arnheim
,
Michael S. Waterman
Proceedings of the 1st Annual International Conference on Computational Molecular Biology, RECOMB'97 (Santa Fe, New Mexico, January 20-23, 1997)
, 1997, pp. 294-299
Alignment networks and electrical networks
Martin Vingron
,
Michael S. Waterman
Discrete Applied Mathematics
71
(1-3), 1996, pp. 297-309
Applications of combinatorics to molecular biology
Michael S. Waterman
Handbook of Combinatorics
2
, 1995, pp. 1983-2001
Linear trees and RNA secondary structure
William R. Schmitt
,
Michael S. Waterman
Discrete Applied Mathematics
51
(3), 1994, pp. 317-323
A fast filtration algorithm for the substring matching problem
Pavel A. Pevzner
,
Michael S. Waterman
Lecture Notes in Computer Science
684
, 1993, pp. 197-214
Sequence comparison and statistical significance in molecular biology
Michael S. Waterman
Lecture Notes in Computer Science
726
, 1993, pp. 396
Matrix longest common subsequence problem, duality and Hilbert bases
Pavel A. Pevzner
,
Michael S. Waterman
Proceedings of the 3rd Annual Symposium on Combinatorial Pattern Matching, CPM'92 (Tuscon, Arizona, USA, April 29 - May 1, 1992)
644
, 1992, pp. 79-89
Sequence alignments with matched sections
Jerrold R. Griggs
,
Philip J. Hanlon
,
Michael S. Waterman
SIAM Journal on Algebraic Discrete Methods
7
, 1986, pp. 604-608
A new approach to fragment assembly in DNA sequencing
Pavel A. Pevzner
,
Haixu Tang
,
Michael S. Waterman
Proceedings of the 5th Annual International Conference on Computational Molecular Biology, RECOMB'2001 (Montreal, Canada, April 22-25, 2001)
, pp. 256-267