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Technische Universität München
Lehrstuhl für Effiziente Algorithmen
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Towards 3D structure prediction of large RNA molecules: An integer programming framework to insert local 3D motifs in RNA secondary structure
Vladimir Reinharz
,
François Major
,
Jérôme Waldispühl
Bioinformatics
28
(12), 2012, pp. 207-214
Efficient traversal of beta-sheet protein folding pathways using ensemble models
Solomon Shenker
,
Charles W. O'Donnell
,
Srinivas Devadas
,
Bonnie Berger
,
Jérôme Waldispühl
LNCS/LNBI
6577
, 2011, pp. 408-423
An unbiased adaptive sampling algorithm for the exploration of RNA mutational landscapes under evolutionary pressure
Jérôme Waldispühl
,
Yann Ponty
LNCS/LNBI
6577
, 2011, pp. 501-515
Simultaneous alignment and folding of protein sequences
Jérôme Waldispühl
,
Charles W. O'Donnell
,
Sebastian Will
,
Srinivas Devadas
,
Rolf Backofen
,
Bonnie Berger
LNCS/LNBI
5541
, 2009, pp. 339-355
Modeling and predicting all-
\alpha
transmembrane proteins including helix-helix pairing
Jérôme Waldispühl
,
Jean-Marc Steyaert
Theoretical Computer Science
335
(1), 2005, pp. 67-92