Fakultät für Informatik
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Technische Universität München
Lehrstuhl für Effiziente Algorithmen
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Ausgewählte Publikationen
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De Novo
discovery of mutated driver pathways in cancer
Fabio Vandin
,
Eli Upfal
,
Benjamin J. Raphael
LNCS/LNBI
6577
, 2011, pp. 499-500
Parsimony and likelihood reconstruction of human segmental duplications
Crystal L. Kahn
,
Borislav H. Hristov
,
Benjamin J. Raphael
Bioinformatics
26
(18), 2010, pp. 446-452
Structural variation analysis with strobe reads
Anna Ritz
,
Ali Bashir
,
Benjamin J. Raphael
Bioinformatics
26
(10), 2010, pp. 1291-1298
Algorithms for detecting significantly mutated pathways in cancer
Fabio Vandin
,
Eli Upfal
,
Benjamin J. Raphael
LNCS/LNBI
6044
, 2010, pp. 506-521
Optimizing PCR assays for DNA based cancer diagnostics
Ali Bashir
,
Qing Lu
,
Dennis Carson
,
Benjamin Raphael
,
Yu-Tsueng Liu
,
Vineet Bafna
LNCS/LNBI
5541
, 2009, pp. 220-235
Discovery of phosphorylation motif mixtures in phosphoproteomics data
Anna Ritz
,
Gregory Shakhnarovich
,
Arthur R. Salomon
,
Benjamin J. Raphael
Bioinformatics
25
(1), 2009, pp. 14-21
A geometric approach for classification and comparison of structural variants
Suzanne Sindi
,
Elena Helman
,
Ali Bashir
,
Benjamin J. Raphael
Bioinformatics
25
(12), 2009, pp. 222-230
Identification and frequency estimation of inversion polymorphisms from haplotype data
Suzanne S. Sindi
,
Benjamin J. Raphael
LNCS/LNBI
5541
, 2009, pp. 418-433
Analysis of segmental duplications via duplication distance
Crystal L. Kahn
,
Benjamin J. Raphael
Bioinformatics
24
(16), 2008, pp. 133-138
Optimization of primer design for the detection of variable genomic lesions in cancer
Ali Bashir
,
Yu-Tsueng Liu
,
Benjamin J. Raphael
,
Dennis Carson
,
Vineet Bafna
Bioinformatics
23
(21), 2007, pp. 2807-2815
Identification of deletion polymorphisms from haplotypes
Erik Corona
,
Benjamin Raphael
,
Eleazar Eskin
LNCS/LNBI
4453
, 2007, pp. 354-365
Reconstructing tumor amplisomes
Benjamin J. Raphael
,
Pavel A. Pevzner
Bioinformatics
20
(S1), 2004, pp. 265-273
Reconstructing tumor genome architectures
Benjamin J. Raphael
,
Stanislav Volik
,
Colin Collins
,
Pavel A. Pevzner
Bioinformatics
19
(S2), 2003, pp. 162-171