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Technische Universität München
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Mining metabolic pathways through gene expression
Timothy Hancock
,
Ichigaku Takigawa
,
Hiroshi Mamitsuka
Bioinformatics
26
(17), 2010, pp. 2128-2135
Efficiently finding genome-wide three-way gene interactions from transcript- and genotype-data
Mitsunori Kayano
,
Ichigaku Takigawa
,
Motoki Shiga
,
Koji Tsuda
,
Hiroshi Mamitsuka
Bioinformatics
25
(21), 2009, pp. 2735-2743
Enhancing MEDLINE document clustering by incorporating MeSH semantic similarity
Shanfeng Zhu
,
Jia Zeng
,
Hiroshi Mamitsuka
Bioinformatics
25
(15), 2009, pp. 1944-1951
Mining significant tree patterns in carbohydrate sugar chains
Kosuke Hashimoto
,
Ichigaku Takigawa
,
Motoki Shiga
,
Minoru Kanehisa
,
Hiroshi Mamitsuka
Bioinformatics
24
(16), 2008, pp. 167-173
Probabilistic path ranking based on adjacent pairwise coexpression for metabolic transcripts analysis
Ichigaku Takigawa
,
Hiroshi Mamitsuka
Bioinformatics
24
(2), 2008, pp. 250-257
Annotating gene function by combining expression data with a modular gene network
Motoki Shiga
,
Ichigaku Takigawa
,
Hiroshi Mamitsuka
Bioinformatics
23
(13), 2007, pp. 468-478
A hidden Markov model-based approach for identifying timing differences in gene expression under different experimental factors
Takashi Yoneya
,
Hiroshi Mamitsuka
Bioinformatics
23
(7), 2007, pp. 842-849
ProfilePSTMM: Capturing tree-structure motifs in carbohydrate sugar chains
Kiyoko F. Aoki-Kinoshita
,
Nobuhisa Ueda
,
Hiroshi Mamitsuka
,
Minoru Kanehisa
Bioinformatics
22
(14), 2006, pp. 25-34
Improving MHC binding peptide prediction by incorporating binding data of auxiliary MHC molecules
Shanfeng Zhu
,
Keiko Udaka
,
John Sidney
,
Alessandro Sette
,
Kiyoko F. Aoki-Kinoshita
,
Hiroshi Mamitsuka
Bioinformatics
22
(13), 2006, pp. 1648-1655
A score matrix to reveal the hidden links in glycans
Kiyoko F. Aoki
,
Hiroshi Mamitsuka
,
Tatsuya Akutsu
,
Minoru Kanehisa
Bioinformatics
21
(8), 2005, pp. 1457-1463
A probabilistic model for mining implicit ''chemical compound-gene'' relations from literature
Shanfeng Zhu
,
Yasushi Okuno
,
Gozoh Tsujimoto
,
Hiroshi Mamitsuka
Bioinformatics
21
(S2), 2005, pp. 245-251
Application of a new probabilistic model for recognizing complex patterns in glycans
Kiyoko F. Aoki
,
Nobuhisa Ueda
,
Atsuko Yamaguchi
,
Minoru Kanehisa
,
Tatsuya Akutsu
,
Hiroshi Mamitsuka
Bioinformatics
20
(S1), 2004, pp. 6-14
Finding the maximum common subgraph of a partial
k
-tree and a graph with a polynomially bounded number of spanning trees
Atsuko Yamaguchi
,
Kiyoko F. Aoki
,
Hiroshi Mamitsuka
Information Processing Letters
92
(2), 2004, pp. 57-63
Finding the maximum common subgraph of a partial
k
-tree and a graph with a polynomially bounded number of spanning trees
Atsuko Yamaguchi
,
Hiroshi Mamitsuka
Lecture Notes in Computer Science
2906
, 2003, pp. 58-67
Supervised learning of hidden Markov models for sequence discrimination
Hiroshi Mamitsuka
Proceedings of the 1st Annual International Conference on Computational Molecular Biology, RECOMB'97 (Santa Fe, New Mexico, January 20-23, 1997)
, 1997, pp. 202-208
Predicting location and structure of beta-sheet regions using stochastic tree grammars
Hiroshi Mamitsuka
,
Naoki Abe
Proceedings of the 2nd International Conference on Intelligent Systems for Molecular Biology, ISMB'94 (Stanford, CA, USA, August 14-17, 1994)
, 1994, pp. 276-284