Fakultät für Informatik
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Technische Universität München
Lehrstuhl für Effiziente Algorithmen
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GFOLD: A generalized fold change for ranking differentially expressed genes from RNA-seq data
Jianxing Feng
,
Clifford A. Meyer
,
Qian Wang
,
Jun S. Liu
,
X. Shirley Liu
,
Yong Zhang
Bioinformatics
28
(21), 2012, pp. 2782-2788
DiNuP: A systematic approach to identify regions of differential nucleosome positioning
Kai Fu
,
Qianzi Tang
,
Jianxing Feng
,
X. Shirley Liu
,
Yong Zhang
Bioinformatics
28
(15), 2012, pp. 1965-1971
CistromeMap: A knowledgebase and web server for ChIP-Seq and DNase-Seq studies in mouse and human
Bo Qin
,
Meng Zhou
,
Ying Ge
,
Len Taing
,
Tao Liu
,
Qian Wang
,
Su Wang
,
Junsheng Chen
,
Lingling Shen
,
Xikun Duan
,
Sheng'en Hu
,
Wei Li
,
Henry Long
,
Yong Zhang
,
X. Shirley Liu
Bioinformatics
28
(10), 2012, pp. 1411-1412
BINOCh: Binding inference from nucleosome occupancy changes
Clifford A. Meyer
,
Housheng H. He
,
Myles Brown
,
X. Shirley Liu
Bioinformatics
27
(13), 2011, pp. 1867-1868
CEAS: cis-regulatory element annotation system
Hyunjin Shin
,
Tao Liu
,
Arjun K. Manrai
,
X. Shirley Liu
Bioinformatics
25
(19), 2009, pp. 2605-2606
Microarray blob-defect removal improves array analysis
Jun S. Song
,
Kaveh Maghsoudi
,
Wei Li
,
Edward Fox
,
John Quackenbush
,
X. Shirley Liu
Bioinformatics
23
(8), 2007, pp. 966-971
Context-specific infinite mixtures for clustering gene expression profiles across diverse microarray dataset
X. Liu
,
S. Sivaganesan
,
K.Y. Yeung
,
J. Guo
,
R.E. Bumgarner
,
Mario Medvedovic
Bioinformatics
22
(14), 2006, pp. 1737-1744
A boosting approach for motif modeling using ChIP-chip data
Pengyu Hong
,
X. Shirley Liu
,
Qing Zhou
,
Xin Lu
,
Jun S. Liu
,
Wing H. Wong
Bioinformatics
21
(11), 2005, pp. 2636-2643
A hidden Markov model for analyzing ChIP-chip experiments on genome tiling arrays and its application to p53 binding sequences
Wei Li
,
Clifford A. Meyer
,
X. Shirley Liu
Bioinformatics
21
(S1), 2005, pp. 274-282
An experimental evaluation of a loop versus a reference design for two-channel microarrays
V. Vinciotti
,
R. Khanin
,
D. D'Alimonte
,
X. Liu
,
N. Cattini
,
G. Hotchkiss
,
G. Bucca
,
O. de Jesus
,
J. Rasaiyaah
,
C.P. Smith
,
P. Kellam
,
E. Wit
Bioinformatics
21
(4), 2005, pp. 492-501
A modal logic for message passing processes
M. Hennessy
,
X. Liu
Acta Informatica
32
, 1995, pp. 375-393