Fakultät für Informatik
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Technische Universität München
Lehrstuhl für Effiziente Algorithmen
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IMID: Integrated molecular interaction database
Sentil Balaji
,
Charles Mcclendon
,
Rajesh Chowdhary
,
Jun S. Liu
,
Jinfeng Zhang
Bioinformatics
28
(5), 2012, pp. 747-749
GFOLD: A generalized fold change for ranking differentially expressed genes from RNA-seq data
Jianxing Feng
,
Clifford A. Meyer
,
Qian Wang
,
Jun S. Liu
,
X. Shirley Liu
,
Yong Zhang
Bioinformatics
28
(21), 2012, pp. 2782-2788
HiCNorm: Removing biases in Hi-C data via Poisson regression
Ming Hu
,
Ke Deng
,
Siddarth Selvaraj
,
Zhaohui Qin
,
Bing Ren
,
Jun S. Liu
Bioinformatics
28
(23), 2012, pp. 3131-3133
Using Poisson mixed-effects model to quantify transcript-level gene expression in RNA-Seq
Ming Hu
,
Yu Zhu
,
Jeremy M.G. Taylor
,
Jun S. Liu
,
Zhaohui S. Qin
Bioinformatics
28
(1), 2012, pp. 63-68
Tmod: Toolbox of motif discovery
Hanchang Sun
,
Yuan Yuan
,
Yibo Wu
,
Hui Liu
,
Jun S. Liu
,
Hongwei Xie
Bioinformatics
26
(3), 2010, pp. 405-407
Bayesian inference of protein-protein interactions from biological literature
Rajesh Chowdhary
,
Jinfeng Zhang
,
Jun S. Liu
Bioinformatics
25
(12), 2009, pp. 1536-1542
BEST: Binding-site Estimation Suite of Tools
Dongsheng Che
,
Shane Jensen
,
Liming Cai
,
Jun S. Liu
Bioinformatics
21
(12), 2005, pp. 2909-2911
A boosting approach for motif modeling using ChIP-chip data
Pengyu Hong
,
X. Shirley Liu
,
Qing Zhou
,
Xin Lu
,
Jun S. Liu
,
Wing H. Wong
Bioinformatics
21
(11), 2005, pp. 2636-2643
Combining phylogenetic motif discovery and motif clustering to predict co-regulated genes
Shane T. Jensen
,
Lei Shen
,
Jun S. Liu
Bioinformatics
21
(20), 2005, pp. 3832-3839
HapBlock: Haplotype block partitioning and tag SNP selection software using a set of dynamic programming algorithms
Kui Zhang
,
Zhaohui Qin
,
Ting Chen
,
Jun S. Liu
,
Michael S. Waterman
,
Fengzhu Sun
Bioinformatics
21
(1), 2005, pp. 131-134
RSIR: Regularized sliced inverse regression for motif discovery
Wenxuan Zhong
,
Peng Zeng
,
Ping Ma
,
Jun S. Liu
,
Yu Zhu
Bioinformatics
21
(22), 2005, pp. 4169-4175
BioOptimizer: A Bayesian scoring function approach to motif discovery
Shane T. Jensen
,
Jun S. Liu
Bioinformatics
20
(10), 2004, pp. 1557-1564
Haplotype inference and its application in linkage disequilibrium mapping
Tianhua Niu
,
Xin Lu
,
Hosung Kang
,
Zhaohui S. Qin
,
Jun S. Liu
LNCS/LNBI
2983
, 2004, pp. 48-61
Dynamic programming algorithms for haplotype block partitioning and tag SNP selection using haplotype data or genotype data
Kui Zhang
,
Ting Chen
,
Michael S. Waterman
,
Zhaohui S. Qin
,
Jun S. Liu
,
Fengzhu Sun
LNCS/LNBI
2983
, 2004, pp. 96-112
Modeling within-motif dependence for transcription factor binding site predictions
Qing Zhou
,
Jun S. Liu
Bioinformatics
20
(6), 2004, pp. 909-916
Bayesian modeling and computation in bioinformatics research
Jun S. Liu
Computational Molecular Biology
, 2002, pp. 11-44
Bayesian modeling and computation in bioinformatics research
Jun S. Liu
Computer Molecular Biology
, 2002, pp. 11-44
A Gibbs sampler for the detection of subtle motifs in multiple sequences
Charles E. Lawrence
,
Stephen F. Altschul
,
John C. Wootton
,
Mark S. Boguski
,
Andrew F. Neuwald
,
Jun S. Liu
Proceedings of the Twenty-Seventh Annual Hawaii International Conference on System Sciences, HICSS-27. Vol.~V: Biotechnology Computing (Wailea, Hawaii, January 4-7, 1994)
, 1994, pp. 245-254