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tigre: Transcription factor inference through Gaussian process reconstruction of expression for bioconductor
Antti Honkela
,
Pei Gao
,
Jonatan Ropponen
,
Magnus Rattray
,
Neil D. Lawrence
Bioinformatics
27
(7), 2011, pp. 1026-1027
TFInfer: A tool for probabilistic inference of transcription factor activities
H.M. Shahzad Asif
,
Matthew D. Rolfe
,
Jeff Green
,
Neil D. Lawrence
,
Magnus Rattray
,
Guido Sanguinetti
Bioinformatics
26
(20), 2010, pp. 2635-2636
Gaussian process modelling of latent chemical species: Applications to inferring transcription factor activities
Pei Gao
,
Antti Honkela
,
Magnus Rattray
,
Neil D. Lawrence
Bioinformatics
24
(16), 2008, pp. 70-75
Probe-level measurement error improves accuracy in detecting differential gene expression
Xuejun Liu
,
Marta Milo
,
Neil D. Lawrence
,
Magnus Rattray
Bioinformatics
22
(17), 2006, pp. 2107-2113
Probabilistic inference of transcription factor concentrations and gene-specific regulatory activities
Guido Sanguinetti
,
Neil D. Lawrence
,
Magnus Rattray
Bioinformatics
22
(22), 2006, pp. 2775-2781
A probabilistic dynamical model for quantitative inference of the regulatory mechanism of transcription
Guido Sanguinetti
,
Magnus Rattray
,
Neil D. Lawrence
Bioinformatics
22
(14), 2006, pp. 1753-1759
A tractable probabilistic model for Affymetrix probe-level analysis across multiple chips
Xuejun Liu
,
Marta Milo
,
Neil D. Lawrence
,
Magnus Rattray
Bioinformatics
21
(18), 2005, pp. 3637-3644
Accounting for probe-level noise in principal component analysis of microarray data
Guido Sanguinetti
,
Marta Milo
,
Magnus Rattray
,
Neil D. Lawrence
Bioinformatics
21
(19), 2005, pp. 3748-3754
Reducing the variability in cDNA microarray image processing by Bayesian inference
Neil D. Lawrence
,
Marta Milo
,
Mahesan Niranjan
,
Penny Rashbass
,
Stephan Soullier
Bioinformatics
20
(4), 2004, pp. 518-526