Fakultät für Informatik
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Technische Universität München
Lehrstuhl für Effiziente Algorithmen
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CCHMM\_PROF: A HMM-based coiled-coil predictor with evolutionary information
Lisa Bartoli
,
Piero Fariselli
,
Anders Krogh
,
Rita Casadio
Bioinformatics
25
(21), 2009, pp. 2757-2763
Modeling promoter grammars with evolving hidden Markov models
Kyoung-Jae Won
,
Albin Sandelin
,
Troels Torben Marstrand
,
Anders Krogh
Bioinformatics
24
(15), 2008, pp. 1669-1675
MASTR: Multiple alignment and structure prediction of non-coding RNAs using simulated annealing
Stinus Lindgreen
,
Paul P. Gardner
,
Anders Krogh
Bioinformatics
23
(24), 2007, pp. 3304-3311
An HMM posterior decoder for sequence feature prediction that includes homology information
Lukas Käll
,
Anders Krogh
,
Erik L.L. Sonnhammer
Bioinformatics
21
(S1), 2005, pp. 251-257
Large-scale prokaryotic gene prediction and comparison to genome annotation
Pernille Nielsen
,
Anders Krogh
Bioinformatics
21
(24), 2005, pp. 4322-4329
Training HMM structure with genetic algorithm for biological sequence analysis
Kyoung-Jae Won
,
Adam Prügel-Bennett
,
Anders Krogh
Bioinformatics
20
(18), 2004, pp. 3613-3619
A sequence-profile-based HMM for predicting and discriminating
\beta
barrel membrane proteins
Pier Luigi Martelli
,
Piero Fariselli
,
Anders Krogh
,
Rita Casadio
Bioinformatics
18
(S1), 2002, pp. 46-53
An efficient algorithm for finding short approximate non-tandem repeats
Ezekiel F. Adebiyi
,
Tao Jiang
,
Michael Kaufmann
Bioinformatics
17
(S1), 2001, pp. 5-12
An insight into domain combinations
Gordana Apic
,
Julian Gough
,
Sarah A. Teichmann
Bioinformatics
17
(S1), 2001, pp. 83-89
SCOPE: A probabilistic model for scoring tandem mass spectra against a peptide database
Vineet Bafna
,
Nathan Edwards
Bioinformatics
17
(S1), 2001, pp. 13-21
Fast optimal leaf ordering for hierarchical clustering
Ziv Bar-Joseph
,
David K. Gifford
,
Tommi S. Jaakkola
Bioinformatics
17
(S1), 2001, pp. 22-29
Separating real motifs from their artifacts
Mathieu Blanchette
,
Saurabh Sinha
Bioinformatics
17
(S1), 2001, pp. 30-38
Probe selection algorithms with applications in the analysis of microbial communities
James Borneman
,
Marek Chrobak
,
Gianluca Della Vedova
,
Andres Figueroa
,
Tao Jiang
Bioinformatics
17
(S1), 2001, pp. 39-48
Visualizing associations between genome sequences and gene expression data using genome-mean expression profiles
Derek Y. Chiang
,
Patrick O. Brown
,
Michael B. Eisen
Bioinformatics
17
(S1), 2001, pp. 49-55
Gene recognition based on DAG shortest paths
John S. Chuang
,
Dan Roth
Bioinformatics
17
(S1), 2001, pp. 56-64
Using mixtures of common ancestors for estimating the probabilities of discrete events in biological sequences
Eleazar Eskin
,
William N. Grundy
,
Yoram Singer
Bioinformatics
17
(1), 2001, pp. 65-73
GENIES: A natural-languange processing system for the extraction of molecular pathways from journal articles
Carol Friedman
,
Pauline Kra
,
Hong Yu
,
Michael Krauthammer
,
Andrey Rzetsky
Bioinformatics
17
(S1), 2001, pp. 74-82
Promoter prediction in the human genome
Sridhar Hannenhalli
,
Samuel Levy
Bioinformatics
17
(S1), 2001, pp. 90-96
Disambiguating proteins, genes, and RNA in text: A machine learning approach
Vasileios Hatzivassiloglou
,
Pablo A. Duboué
,
Andrey Rzhetsky
Bioinformatics
17
(S1), 2001, pp. 97-106
GEST: A gene expression search tool based on a novel Bayesian similarity metric
Lawrence Hunter
,
Ronald C. Taylor
,
Sonia M. Leach
,
Richard Simon
Bioinformatics
17
(S1), 2001, pp. 115-122
Probabilistic devergence measures for detecting interspecies recombination
Dirk Husmeier
,
Frank Wright
Bioinformatics
17
(S1), 2001, pp. 123-131
Design of a compartmentalized shotgun assembler for the human genome
Daniel H. Huson
,
Knut Reinert
,
Saul A. Kravitz
,
Karin A. Remington
,
Art L. Delcher
,
Ian M. Dew
,
Mike Flanigan
,
Aaron L. Halpern
,
Zhongwu Lai
,
Clark M. Mobarry
,
Granger G. Sutton
,
Eugene W. Myers
Bioinformatics
17
(S1), 2001, pp. 132-139
Integrating genomic homology into gene structure prediction
Ian Korf
,
Paul Flicek
,
Daniel Duan
,
Michael R. Brent
Bioinformatics
17
(S1), 2001, pp. 140-148
Generating protein interaction maps from incomplete data: Application to fold assignment
Michael Lappe
,
Jong Park
,
Oliver Niggemann
,
Liisa Holm
Bioinformatics
17
(S1), 2001, pp. 149-156
Feature selection for DNA methylation based cancer classification
Fabian Model
,
Péter Adorján
,
Alexander Olek
,
Christian Piepenbrock
Bioinformatics
17
(S1), 2001, pp. 157-164
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