Fakultät für Informatik
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Technische Universität München
Lehrstuhl für Effiziente Algorithmen
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Drug-target interaction prediction from chemical, genomic and pharmacological data in an integrated framework
Yoshihiro Yamanishi
,
Masaaki Kotera
,
Minoru Kanehisa
,
Susumu Goto
Bioinformatics
26
(12), 2010, pp. 246-254
E-zyme: Predicting potential EC numbers from the chemical transformation pattern of substrate-product pairs
Yoshihiro Yamanishi
,
Masahiro Hattori
,
Masaaki Kotera
,
Susumu Goto
,
Minoru Kanehisa
Bioinformatics
25
(12), 2009, pp. 179-186
Mining significant tree patterns in carbohydrate sugar chains
Kosuke Hashimoto
,
Ichigaku Takigawa
,
Motoki Shiga
,
Minoru Kanehisa
,
Hiroshi Mamitsuka
Bioinformatics
24
(16), 2008, pp. 167-173
varDB: A pathogen-specific sequence database of protein families involved in antigenic variation
C. Nelson Hayes
,
Diego Diez
,
Nicolas Joannin
,
Wataru Honda
,
Minoru Kanehisa
,
Mats Wahlgren
,
Craig E. Wheelock
,
Susumu Goto
Bioinformatics
24
(21), 2008, pp. 2564-2565
Prediction of drug-target interaction networks from the integration of chemical and genomic spaces
Yoshihiro Yamanishi
,
Michihiro Araki
,
Alex Gutteridge
,
Wataru Honda
,
Minoru Kanehisa
Bioinformatics
24
(13), 2008, pp. 232-240
The commonality of protein interaction networks determined in neurodegenerative disorders (NDDs)
Vachiranee Limviphuvadh
,
Seigo Tanaka
,
Susumu Goto
,
Kunihiro Ueda
,
Minoru Kanehisa
Bioinformatics
23
(16), 2007, pp. 2129-2138
A 6-approximation algorithm for computing smallest common AoN-supertree with application to the reconstruction of Glycan trees
Kiyoko F. Aoki-Kinoshita
,
Minoru Kanehisa
,
Ming-Yang Kao
,
Xiang-Yang Li
,
Weizhao Wang
Lecture Notes in Computer Science
4288
, 2006, pp. 100-110
ProfilePSTMM: Capturing tree-structure motifs in carbohydrate sugar chains
Kiyoko F. Aoki-Kinoshita
,
Nobuhisa Ueda
,
Hiroshi Mamitsuka
,
Minoru Kanehisa
Bioinformatics
22
(14), 2006, pp. 25-34
Identification of metabolic units induced by environmental signals
Jose C. Nacher
,
Jean-Marc Schwartz
,
Minoru Kanehisa
,
Tatsuya Akutsu
Bioinformatics
22
(14), 2006, pp. 375-383
Partial correlation coefficient between distance matrices as a new indicator of protein-protein interactions
Tetsuya Sato
,
Yoshihiro Yamanishi
,
Katsuhisa Horimoto
,
Minoru Kanehisa
,
Hiroyuki Toh
Bioinformatics
22
(20), 2006, pp. 2488-2492
A score matrix to reveal the hidden links in glycans
Kiyoko F. Aoki
,
Hiroshi Mamitsuka
,
Tatsuya Akutsu
,
Minoru Kanehisa
Bioinformatics
21
(8), 2005, pp. 1457-1463
Fast and accurate database homology search using upper bounds of local alignment scores
Masumi Itoh
,
Susumu Goto
,
Tatsuya Akutsu
,
Minoru Kanehisa
Bioinformatics
21
(7), 2005, pp. 912-921
Prediction of glycan structures from gene expression data based on glycosyltransferase reactions
Shin Kawano
,
Kosuke Hashimoto
,
Takashi Miyama
,
Susumu Goto
,
Minoru Kanehisa
Bioinformatics
21
(21), 2005, pp. 3976-3982
The inference of protein-protein interactions by co-evolutionary analysis is improved by excluding the information about the phylogenetic relationships
Tetsuya Sato
,
Yoshihiro Yamanishi
,
Minoru Kanehisa
,
Hiroyuki Toh
Bioinformatics
21
(17), 2005, pp. 3482-3489
A quadratic programming approach for decomposing steady-state metabolic flux distributions onto elementary modes
Jean-Marc Schwartz
,
Minoru Kanehisa
Bioinformatics
21
(S2), 2005, pp. 204-205
Supervised enzyme network inference from the integration of genomic data and chemical information
Yoshihiro Yamanishi
,
Jean-Philippe Vert
,
Minoru Kanehisa
Bioinformatics
21
(S1), 2005, pp. 468-477
Application of a new probabilistic model for recognizing complex patterns in glycans
Kiyoko F. Aoki
,
Nobuhisa Ueda
,
Atsuko Yamaguchi
,
Minoru Kanehisa
,
Tatsuya Akutsu
,
Hiroshi Mamitsuka
Bioinformatics
20
(S1), 2004, pp. 6-14
Prediction of protein subcellular locations by support vector machines using compositions of amino acids and amino acid pairs
Keun-Joon Park
,
Minoru Kanehisa
Bioinformatics
19
(13), 2003, pp. 1656-1663
Extracting active pathways from gene expression data
Jean Philippe Vert
,
Minoru Kanehisa
Bioinformatics
19
(S2), 2003, pp. 238-244
KEGG for computational genomics
Minoru Kanehisa
,
Susumu Goto
Computational Molecular Biology
, 2002, pp. 301-315
KEGG for computational genomics
Minoru Kanehisa
,
Susumu Goto
Computer Molecular Biology
, 2002, pp. 301-315
Sequence comparison to graph comparison - A new generation of algorithms for network analysis of interacting molecules
Minoru Kanehisa
Proceedings of the 4th Annual International Conference on Computational Molecular Biology, RECOMB'2000 (Tokyo, Japan, April 8-11, 2000)
, 2000, pp. 176-176
Development of an integrated database for genome mapping and nucleotide sequences
Takahiko Suzuki
,
Toshihisa Takagi
,
Satoru Kuhara
,
Minoru Kanehisa
Proceedings of the Twenty-Seventh Annual Hawaii International Conference on System Sciences, HICSS-27. Vol.~V: Biotechnology Computing (Wailea, Hawaii, January 4-7, 1994)
, 1994, pp. 68-76