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Technische Universität München
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Improvements in the reconstruction of time-varying gene regulatory networks: Dynamic programming and regularization by information sharing among genes
Marco Grzegorczyk
,
Dirk Husmeier
Bioinformatics
27
(5), 2011, pp. 693-699
TOPALi v2: A rich graphical interface for evolutionary analyses of multiple alignments on HPC clusters and multi-core desktops
Iain Milne
,
Dominik Lindner
,
Micha Bayer
,
Dirk Husmeier
,
Gráinne McGuire
,
David F. Marshall
,
Frank Wright
Bioinformatics
25
(1), 2009, pp. 126-127
Modelling non-stationary gene regulatory processes with a non-homogeneous Bayesian network and the allocation sampler
Marco Grzegorczyk
,
Dirk Husmeier
,
Kieron D. Edwards
,
Peter Ghazal
,
Andrew J. Millar
Bioinformatics
24
(18), 2008, pp. 2071-2078
Probabilistic in silico prediction of protein-peptide interactions
Wolfgang Lehrach
,
Dirk Husmeier
,
Christopher K.I. Williams
LNCS/LNBI
4023
, 2007, pp. 188-197
A regularized discriminative model for the prediction of protein-peptide interactions
Wolfgang P. Lehrach
,
Dirk Husmeier
,
Christopher K.I. Williams
Bioinformatics
22
(5), 2006, pp. 532-540
Comparative evaluation of reverse engineering gene regulatory networks with relevance networks, graphical Gaussian models and Bayesian networks
Adriano V. Werhli
,
Marco Grzegorczyk
,
Dirk Husmeier
Bioinformatics
22
(20), 2006, pp. 2523-2531
Detecting interspecific recombination with a pruned probabilistic divergence measure
Dirk Husmeier
,
Frank Wright
,
Iain Milne
Bioinformatics
21
(9), 2005, pp. 1797-1806
Discriminating between rate heterogeneity and interspecific recombination in DNA sequence alignments with phylogenetic factorial hidden Markov models
Dirk Husmeier
Bioinformatics
21
(S2), 2005, pp. 166-172
TOPALi: Software for automatic identification of recombinant sequences within DNA multiple alignments
Iain Milne
,
Frank Wright
,
Glenn Rowe
,
David F. Marshall
,
Dirk Husmeier
,
Gràinne McGuire
Bioinformatics
20
(11), 2004, pp. 1806-1807
Sensitivity and specificity of inferring genetic regulatory interactions from microarray experiments with dynamic Bayesian networks
Dirk Husmeier
Bioinformatics
19
(17), 2003, pp. 2271-2282
Detecting recombination with MCMC
Dirk Husmeier
,
Gráinne McGuire
Bioinformatics
18
(S1), 2002, pp. 345-353
A Bayesian approach to discriminate between alternative DNA sequence segmentations
Dirk Husmeier
,
Frank Wright
Bioinformatics
18
(2), 2002, pp. 226-234
Probabilistic devergence measures for detecting interspecies recombination
Dirk Husmeier
,
Frank Wright
Bioinformatics
17
(S1), 2001, pp. 123-131