Fakultät für Informatik
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Technische Universität München
Lehrstuhl für Effiziente Algorithmen
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SANS: High-throughput retrieval of protein sequences allowing 50\% mismatches
J. Patrik Koskinen
,
Liisa Holm
Bioinformatics
28
(18), 2012, pp. 438-443
MPEA - Metabolite pathway enrichment analysis
Matti Kankainen
,
Peddinti Gopalacharyulu
,
Liisa Holm
,
Matej Ores̑ić
Bioinformatics
27
(13), 2011, pp. 1878-1879
A novel method for assigning functional linkages to proteins using enhanced phylogenetic trees
Hung Xuan Ta
,
Patrik Koskinen
,
Liisa Holm
Bioinformatics
27
(5), 2011, pp. 700-706
LOCP - Locating pilus operons in Gram-positive bacteria
Ilya Plyusnin
,
Liisa Holm
,
Matti Kankainen
Bioinformatics
25
(9), 2009, pp. 1187-1188
The global trace graph, a novel paradigm for searching protein sequence databases
Andreas Heger
,
Swapan Mallick
,
Christopher Wilton
,
Liisa Holm
Bioinformatics
23
(18), 2007, pp. 2361-2367
Bayesian search of functionally divergent protein subgroups and their function specific residues
Pekka Marttinen
,
Jukka Corander
,
Petri Törönen
,
Liisa Holm
Bioinformatics
22
(20), 2006, pp. 2466-2474
PSIbase: A database of Protein Structural Interactome map (PSIMAP)
Sungsam Gong
,
Giseok Yoon
,
Insoo Jang
,
Dan Bolser
,
Panos Dafas
,
Michael Schroeder
,
Hansol Choi
,
Yoobok Cho
,
Kyungsook Han
,
Sunghoon Lee
,
Hwanho Choi
,
Michael Lappe
,
Liisa Holm
,
Sangsoo Kim
,
Donghoon Oh
,
Jonghwa Bhak
Bioinformatics
21
(10), 2005, pp. 2541-2543
Sensitive pattern discovery with ''fuzzy'' alignments of distantly related proteins
Andreas Heger
,
Liisa Holm
Bioinformatics
19
(S1), 2003, pp. 130-137
Accurate detection of very sparse sequence motifs
Andreas Heger
,
Michael Lappe
,
Liisa Holm
Proceedings of the 7th Annual International Conference on Research in Computational Molecular Biology, RECOMB'2003 (Berlin, Germany, April 10-13, 2003)
, 2003, pp. 139-147
Picasso: Generating a covering set of protein family profiles
Andreas Heger
,
Liisa Holm
Bioinformatics
17
(3), 2001, pp. 272-279
Generating protein interaction maps from incomplete data: Application to fold assignment
Michael Lappe
,
Jong Park
,
Oliver Niggemann
,
Liisa Holm
Bioinformatics
17
(S1), 2001, pp. 149-156
DaliLite workbench for protein structure comparison
Liisa Holm
,
Jong Park
Bioinformatics
16
(6), 2000, pp. 566-567
Estimating the significance of sequence order in protein secondary structure and prediction
Jong Park
,
Sabine Dietmann
,
Andreas Heger
,
Liisa Holm
Bioinformatics
16
(11), 2000, pp. 978-987
Sequence search algorithm assessment and testing toolkit (SAT)
Jong Park
,
Liisa Holm
,
Cyrus Chothia
Bioinformatics
16
(2), 2000, pp. 104-110
RSDB: Representative protein sequence databases have high information content
Jong Park
,
Liisa Holm
,
Andreas Heger
,
Cyrus Chothia
Bioinformatics
16
(5), 2000, pp. 458-464
Decision support system for the evolutionary classification of protein structures
Liisa Holm
,
Chris Sander
Proceedings of the 5th International Conference on Intelligent Systems for Molecular Biology, ISMB'97 (Halkidiki, Greece, June 21-26, 1997)
, 1997, pp. 140-146
3-D lookup: Fast protein structure database searches at 90\% reliability
Liisa Holm
,
Chris Sander
Proceedings of the 3rd International Conference on Intelligent Systems for Molecular Biology, ISMB'95 (Cambridge, England, July 16-19, 1995)
, 1995, pp. 179-187