Fakultät für Informatik
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Technische Universität München
Lehrstuhl für Effiziente Algorithmen
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Fast and accurate inference of local ancestry in Latino populations
Yael Baran
,
Bogdan Pasaniuc
,
Sriram Sankararaman
,
Dara G. Torgerson
,
Christopher Gignoux
,
Celeste Eng
,
William Rodriguez-Cintron
,
Rocio Chapela
,
Jean G. Ford
,
Pedro C. Avila
,
Jose Rodriguez-Santana
,
Esteban Gonzàlez Burchard
,
Eran Halperin
Bioinformatics
28
(10), 2012, pp. 1359-1367
CNVeM: Copy number variation detection using uncertainty of read mapping
Zhanyong Wang
,
Farhad Hormozdiari
,
Wen-Yun Yang
,
Eran Halperin
,
Eleazar Eskin
Lecture Notes in Computer Science
7262
, 2012, pp. 326-340
Probabilistic inference of viral quasispecies subject to recombination
Osvaldo Zagordi
,
Armin Töpfer
,
Sandhya Prabhakaran
,
Volker Roth
,
Eran Halperin
,
Niko Beerenwinkel
Lecture Notes in Computer Science
7262
, 2012, pp. 342-354
Pedigree reconstruction using identity by descent
Bonnie Kirkpatrick
,
Shuai Cheng Li
,
Richard M. Karp
,
Eran Halperin
LNCS/LNBI
6577
, 2011, pp. 136-152
Accurate estimation of expression levels of homologous genes in RNA-seq experiments
Bogdan Paşaniuc
,
Noah Zaitlen
,
Eran Halperin
LNCS/LNBI
6044
, 2010, pp. 397-409
miRNAkey: A software for microRNA deep sequencing analysis
Roy Ronen
,
Ido Gan
,
Shira Modai
,
Alona Sukacheov
,
Gideon Dror
,
Eran Halperin
,
Noam Shomron
Bioinformatics
26
(20), 2010, pp. 2615-2616
Haplotype inference in complex pedigrees
Bonnie Kirkpatrick
,
Javier Rosa
,
Eran Halperin
,
Richard M. Karp
LNCS/LNBI
5541
, 2009, pp. 108-120
Inference of locus-specific ancestry in closely related populations
Bogdan Pasaniuc
,
Sriram Sankararaman
,
Gad Kimmel
,
Eran Halperin
Bioinformatics
25
(12), 2009, pp. 213-221
On the inference of ancestries in admixed populations
Sriram Sankararaman
,
Gad Kimmel
,
Eran Halperin
,
Michael I. Jordan
LNCS/LNBI
4955
, 2008, pp. 424-433
HaploPool: Improving haplotype frequency estimation through DNA pools and phylogenetic modeling
Bonnie Kirkpatrick
,
Carlos Santos Armendariz
,
Richard M. Karp
,
Eran Halperin
Bioinformatics
23
(22), 2007, pp. 3048-3055
An efficient and accurate graph-based approach to detect population substructure
Srinath Sridhar
,
Satish Rao
,
Eran Halperin
LNCS/LNBI
4453
, 2007, pp. 503-517
Fixed parameter tractability of binary near-perfect phylogenetic tree reconstruction
Guy E. Blelloch
,
Kedar Dhamdhere
,
Eran Halperin
,
R. Ravi
,
Russell Schwartz
,
Srinath Sridhar
Lecture Notes in Computer Science
4051
, 2006, pp. 667-678
An improved approximation algorithm for vertex cover with hard capacities
Rajiv Gandhi
,
Eran Halperin
,
Samir Khuller
,
Guy Kortsarz
,
Aravind Srinivasan
Journal of Computer and System Sciences
72
(1), 2006, pp. 16-33
Integrality ratio for group Steiner Trees and directed Steiner trees
Eran Halperin
,
Guy Kortsarz
,
Robert Krauthgamer
,
Aravind Srinivasan
,
Nan Wang
SIAM Journal on Computing
36
(5), 2006-2007, pp. 1494-1511
SNP and haplotype analysis - Algorithms and applications
Eran Halperin
Lecture Notes in Computer Science
4009
, 2006, pp. 11-11
Asymmetric
k
-center is log
^*
n
-hard to approximate
Julia Chuzhoy
,
Sudipto Guha
,
Eran Halperin
,
Sanjeev Khanna
,
Guy Kortsarz
,
Robert Krauthgamer
,
Joseph (Seffi) Naor
Journal of the ACM
52
(4), 2005, pp. 538-551
Performance aspects of distributed caches using TTL-based consistency
Edith Cohen
,
Eran Halperin
,
Haim Kaplan
Theoretical Computer Science
331
(1), 2005, pp. 73-96
HAPLOFREQ - Estimating haplotype frequencies efficiently
Eran Halperin
,
Elad Hazan
LNCS/LNBI
3500
, 2005, pp. 553-568
The minimum-entropy set cover problem
Eran Halperin
,
Richard M. Karp
Theoretical Computer Science
348
(2-3), 2005, pp. 240-250
Tag
SNP
selection in genotype data for maximizing
SNP
prediction accuracy
Eran Halperin
,
Gad Kimmel
,
Ron Shamir
Bioinformatics
21
(S1), 2005, pp. 195-203
Asymmetric
k
-center is
\log^* n
-hard to approximate
Julia Chuzhoy
,
Sudipto Guha
,
Eran Halperin
,
Sanjeev Khanna
,
Guy Kortsarz
,
Joseph (Seffi) Naor
Proceedings of the 36th Annual ACM Symposium on Theory of Computing, STOC'2004 (Chicago, Illinois, USA, June 13-15, 2004)
, 2004, pp. 21-27
Haplotype reconstruction from genotype data using Imperfect Phylogeny
Eran Halperin
,
Eleazar Eskin
Bioinformatics
20
(12), 2004, pp. 1842-1849
The minimum-entropy set cover problem
Eran Halperin
,
Richard M. Karp
Lecture Notes in Computer Science
3142
, 2004, pp. 733-744
Perfect phylogeny and haplotype assignment
Eran Halperin
,
Richard M. Karp
Proceedings of the 8th Annual International Conference on Research in Computational Molecular Biology, RECOMB'2004 (San Diego, CA, USA, March 27-31, 2004)
, 2004, pp. 10-19
MAX CUT in cubic graphs
Eran Halperin
,
Dror Livnat
,
Uri Zwick
Journal of Algorithms
53
(2), 2004, pp. 169-185
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