Fakultät für Informatik
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Technische Universität München
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Lineage-based identification of cellular states and expression programs
Tatsunori Hashimoto
,
Tommi Jaakkola
,
Richard Sherwood
,
Esteban O. Mazzoni
,
Hynek Wichterle
,
David Gifford
Bioinformatics
28
(12), 2012, pp. 250-257
Discovering regulatory overlapping RNA transcripts
Timothy Danford
,
Robin Dowell
,
Sudeep Agarwala
,
Paula Grisafi
,
Gerald Fink
,
David Gifford
LNCS/LNBI
6044
, 2010, pp. 110-122
Discovering homotypic binding events at high spatial resolution
Yuchun Guo
,
Georgios Papachristoudis
,
Robert C. Altshuler
,
Georg K. Gerber
,
Tommi S. Jaakkola
,
David K. Gifford
,
Shaun Mahony
Bioinformatics
26
(24), 2010, pp. 3028-3034
A hypothesis-based approach for identifying the binding specificity of regulatory proteins from chromatin immunoprecipitation data
Kenzie D. MacIsaac
,
D. Benjamin Gordon
,
Lena Nekludova
,
Duncan T. Odom
,
Joerg Schreiber
,
David K. Gifford
,
Richard A. Young
,
Ernest Fraenkel
Bioinformatics
22
(4), 2006, pp. 423-429
Semi-supervised analysis of gene expression profiles for lineage-specific development in the Caenorhabditis elegans embryo
Yuan Qi
,
Patrycja E. Missiuro
,
Ashish Kapoor
,
Craig P. Hunter
,
Tommi S. Jaakkola
,
David K. Gifford
,
Hui Ge
Bioinformatics
22
(14), 2006, pp. 417-423
Deconvolving cell cycle expression data with complementary information
Ziv Bar-Joseph
,
Shlomit Farkash
,
David K. Gifford
,
Itamar Simon
,
Roni Rosenfeld
Bioinformatics
20
(S1), 2004, pp. 23-30
K
-ary clustering with optimal leaf ordering for gene expression data
Ziv Bar-Joseph
,
Erik D. Demaine
,
David K. Gifford
,
Nathan Srebro
,
Angèle M. Hamel
,
Tommi S. Jaakkola
Bioinformatics
19
(9), 2003, pp. 1070-1078
A new approach to analyzing gene expression time series data
Ziv Bar-Joseph
,
Georg Gerber
,
David K. Gifford
,
Tommi S. Jaakkola
,
Itamar Simon
Proceedings of the 6th Annual International Conference on Computational Molecular Biology, RECOMB'2002 (Washington, DC, USA, April 18-21, 2002)
, 2002, pp. 39-48
Programmed mutagenesis is universal
Julia Khodor
,
David K. Gifford
Theory of Computing Systems
35
(5), 2002, pp. 483-499
Fast optimal leaf ordering for hierarchical clustering
Ziv Bar-Joseph
,
David K. Gifford
,
Tommi S. Jaakkola
Bioinformatics
17
(S1), 2001, pp. 22-29
On the path to computation with DNA
David K. Gifford
Science
266
, 1994, November, pp. 993-994