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Computational refinement of post-translational modifications predicted from tandem mass spectrometry
Clement Chung
,
Jian Liu
,
Andrew Emili
,
Brendan J. Frey
Bioinformatics
27
(6), 2011, pp. 797-806
Bayesian prediction of tissue-regulated splicing using RNA sequence and cellular context
Hui Yuan Xiong
,
Yoseph Barash
,
Brendan J. Frey
Bioinformatics
27
(18), 2011, pp. 2554-2562
Model-based detection of alternative splicing signals
Yoseph Barash
,
Benjamin J. Blencowe
,
Brendan J. Frey
Bioinformatics
26
(12), 2010, pp. 325-333
Constructing treatment portfolios using affinity propagation
Delbert Dueck
,
Brendan J. Frey
,
Nebojsa Jojic
,
Vladimir Jojic
,
Guri Giaever
,
Andrew Emili
,
Gabe Musso
,
Robert Hegele
LNCS/LNBI
4955
, 2008, pp. 360-371
A Bayesian model that links microarray mRNA measurements to mass spectrometry protein measurements
Anitha Kannan
,
Andrew Emili
,
Brendan J. Frey
LNCS/LNBI
4453
, 2007, pp. 325-338
Detecting microRNA targets by linking sequence, microRNA and gene expression data
Jim C. Huang
,
Quaid D. Morris
,
Brendan J. Frey
LNCS/LNBI
3909
, 2006, pp. 114-129
Inferring global levels of alternative splicing isoforms using a generative model of microarray data
Ofer Shai
,
Quaid D. Morris
,
Benjamin J. Blencowe
,
Brendan J. Frey
Bioinformatics
22
(5), 2006, pp. 606-613
Multi-way clustering of microarray data using probabilistic sparse matrix factorization
Delbert Dueck
,
Quaid D. Morris
,
Brendan J. Frey
Bioinformatics
21
(S1), 2005, pp. 144-151
Finding novel transcripts in high-resolution genome-wide microarray data using the GenRate model
Brendan J. Frey
,
Quaid D. Morris
,
Mark Robinson
,
Timothy R. Hughes
LNCS/LNBI
3500
, 2005, pp. 66-82
GenXHC: A probabilistic generative model for cross-hybridization compensation in high-density genome-wide microarray data
Jim C. Huang
,
Quaid D. Morris
,
Timothy R. Hughes
,
Brendan J. Frey
Bioinformatics
21
(S1), 2005, pp. 222-231