Fakultät für Informatik
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Technische Universität München
Lehrstuhl für Effiziente Algorithmen
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Improving the prediction of disulfide bonds in Eukaryotes with machine learning methods and protein subcellular localization
Castrense Savojardo
,
Piero Fariselli
,
Monther Alhamdoosh
,
Pier Luigi Martelli
,
Andrea Pierleoni
,
Rita Casadio
Bioinformatics
27
(16), 2011, pp. 2224-2230
Improving the detection of transmembrane
\beta
-barrel chains with N-to-1 extreme learning machines
Castrense Savojardo
,
Piero Fariselli
,
Rita Casadio
Bioinformatics
27
(22), 2011, pp. 3123-3128
Fast overlapping of protein contact maps by alignment of eigenvectors
Pietro Di Lena
,
Piero Fariselli
,
Luciano Margara
,
Marco Vassura
,
Rita Casadio
Bioinformatics
26
(18), 2010, pp. 2250-2258
CCHMM\_PROF: A HMM-based coiled-coil predictor with evolutionary information
Lisa Bartoli
,
Piero Fariselli
,
Anders Krogh
,
Rita Casadio
Bioinformatics
25
(21), 2009, pp. 2757-2763
Predicting protein thermostability changes from sequence upon multiple mutations
Ludovica Montanucci
,
Piero Fariselli
,
Pier Luigi Martelli
,
Rita Casadio
Bioinformatics
24
(13), 2008, pp. 190-195
FT-COMAR: Fault tolerant three-dimensional structure reconstruction from protein contact maps
Marco Vassura
,
Luciano Margara
,
Pietro Di Lena
,
Filippo Medri
,
Piero Fariselli
,
Rita Casadio
Bioinformatics
24
(10), 2008, pp. 1313-1315
BaCelLo: A balanced subcellular localization predictor
Andrea Pierleoni
,
Pier Luigi Martelli
,
Piero Fariselli
,
Rita Casadio
Bioinformatics
22
(14), 2006, pp. 408-416
Predicting protein stability changes from sequences using support vector machines
Emidio Capriotti
,
Piero Fariselli
,
Remo Calabrese
,
Rita Casadio
Bioinformatics
21
(S2), 2005, pp. 54-58
ConSeq: The identification of functionally and structurally important residues in protein sequences
Carine Berezin
,
Fabian Glaser
,
Josef Rosenberg
,
Inbal Paz
,
Tal Pupko
,
Piero Fariselli
,
Rita Casadio
,
Nir Ben-Tal
Bioinformatics
20
(8), 2004, pp. 1322-1324
A neural-network-based method for predicting protein stability changes upon single point mutations
Emidio Capriotti
,
Piero Fariselli
,
Rita Casadio
Bioinformatics
20
(S1), 2004, pp. 63-68
MaxSubSeq: An algorithm for segment-length optimization. The case study of the transmembrane spanning segments
Piero Fariselli
,
Michele Finelli
,
Davide Marchignoli
,
Pier Luigi Martelli
,
Ivan Rossi
,
Rita Casadio
Bioinformatics
19
(4), 2003, pp. 500-505
SPEPlip: The detection of signal peptide and lipoprotein cleavage sites
Piero Fariselli
,
Giacomo Finocchiaro
,
Rita Casadio
Bioinformatics
19
(18), 2003, pp. 2498-2499
An ENSEMBLE machine learning approach for the prediction of all-alpha membrane proteins
Pier Luigi Martelli
,
Piero Fariselli
,
Rita Casadio
Bioinformatics
19
(S1), 2003, pp. 205-211
A sequence-profile-based HMM for predicting and discriminating
\beta
barrel membrane proteins
Pier Luigi Martelli
,
Piero Fariselli
,
Anders Krogh
,
Rita Casadio
Bioinformatics
18
(S1), 2002, pp. 46-53
RCNPRED: Prediction of the residue co-ordination numbers in proteins
Piero Fariselli
,
Rita Casadio
Bioinformatics
17
(2), 2001, pp. 202-204
Prediction of disulfide connectivity in proteins
Piero Fariselli
,
Rita Casadio
Bioinformatics
17
(10), 2001, pp. 957-964
Prediction of the number of residue contacts in proteins
Piero Fariselli
,
Rita Casadio
Proceedings of the 8th International Conference on Intelligent Systems for Molecular Biology, ISMB'2000 (La Jolla, California, August 16-23, 2000)
, 2000, pp. 146-151
A data base of minimally frustrated alpha helical segments extracted from proteins according to an entropy criterion
Rita Casadio
,
Mario Compiani
,
Piero Fariselli
,
Pier Luigi Martelli
Proceedings of the 7th International Conference on Intelligent Systems for Molecular Biology, ISMB'99 (Heidelberg, Germany, August 6-10, 1999)
, 1999, pp. 68-76
Refining neural network predictions for helical transmembrane proteins by dynamic programming
Burkhard Rost
,
Rita Casadio
,
Piero Fariselli
Proceedings of the 4th International Conference on Intelligent Systems for Molecular Biology, ISMB'96 (St. Louis, MO, USA, June 12-15, 1996)
, 1996, pp. 192-200
Predicting free energy contribution to the conformational stability of folded proteins from the residue sequence with radial basis function networks
Rita Casadio
,
Mario Compiani
,
Piero Fariselli
,
Francesco Vivarelli
Proceedings of the 3rd International Conference on Intelligent Systems for Molecular Biology, ISMB'95 (Cambridge, England, July 16-19, 1995)
, 1995, pp. 81-88