Fakultät für Informatik
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Technische Universität München
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A geometric arrangement algorithm for structure determination of symmetric protein homo-oligomers from NOEs and RDCs
Jeffrey W. Martin
,
Anthony K. Yan
,
Chris Bailey-Kellogg
,
Pei Zhou
,
Bruce R. Donald
LNCS/LNBI
6577
, 2011, pp. 222-237
Design of protein-protein interactions with a novel ensemble-based scoring algorithm
Kyle E. Roberts
,
Patrick R. Cushing
,
Prisca Boisguerin
,
Dean R. Madden
,
Bruce R. Donald
LNCS/LNBI
6577
, 2011, pp. 361-376
A Bayesian approach for determining protein side-chain rotamer conformations using unassigned NOE data
Jianyang Zeng
,
Kyle E. Roberts
,
Pei Zhou
,
Bruce R. Donald
LNCS/LNBI
6577
, 2011, pp. 563-578
Algorithm for backrub motions in protein design
Ivelin Georgiev
,
Daniel Keedy
,
Jane S. Richardson
,
David C. Richardson
,
Bruce R. Donald
Bioinformatics
24
(13), 2008, pp. 196-204
Dead-End Elimination with Backbone Flexibility
Ivelin Georgiev
,
Bruce R. Donald
Bioinformatics
23
(13), 2007, pp. 185-194
Improved Pruning algorithms and Divide-and-Conquer strategies for Dead-End Elimination, with application to protein design
Ivelin Georgiev
,
Ryan H. Lilien
,
Bruce R. Donald
Bioinformatics
22
(14), 2006, pp. 174-183
A novel minimized dead-end elimination criterion and its application to protein redesign in a hybrid scoring and search algorithm for computing partition functions over molecular ensembles
Ivelin Georgiev
,
Ryan H. Lilien
,
Bruce R. Donald
LNCS/LNBI
3909
, 2006, pp. 530-545
A novel ensemble-based scoring and search algorithm for protein redesign, and its application to modify the substrate specificity of the gramicidin synthetase A phenylalanine adenylation enzyme
Ryan H. Lilien
,
Brian W. Stevens
,
Amy C. Anderson
,
Bruce R. Donald
Proceedings of the 8th Annual International Conference on Research in Computational Molecular Biology, RECOMB'2004 (San Diego, CA, USA, March 27-31, 2004)
, 2004, pp. 46-57
The complexity of planar compliant motion planning under uncertainty
Bruce R. Donald
Algorithmica
5
, 1990, pp. 353-382